Helicobacter pylori and Complex Gangliosides

Size: px
Start display at page:

Download "Helicobacter pylori and Complex Gangliosides"

Transcription

1 INFECTION AND IMMUNITY, Mar. 2004, p Vol. 72, No /04/$ DOI: /IAI Copyright 2004, American Society for Microbiology. All Rights Reserved. Helicobacter pylori and Complex Gangliosides Niamh Roche, 1 Jonas Ångström, 1 Marina Hurtig, 2 Thomas Larsson, 1 Thomas Borén, 2 and Susann Teneberg 1 * Institute of Medical Biochemistry, Göteborg University, SE Göteborg, 1 and Department of Odontology/Oral Microbiology, Umeå University, SE Umeå, 2 Sweden Received 14 July 2003/Returned for modification 22 October 2003/Accepted 26 November 2003 Recognition of sialic acid-containing glycoconjugates by the human gastric pathogen Helicobacter pylori has been repeatedly demonstrated. To investigate the structural requirements for H. pylori binding to complex gangliosides, a large number of gangliosides were isolated and characterized by mass spectrometry and proton nuclear magnetic resonance. Ganglioside binding of sialic acid-recognizing H. pylori strains (strains J99 and CCUG 17874) and knockout mutant strains with the sialic acid binding adhesin SabA or the NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc -binding neutrophil-activating protein HPNAP deleted was investigated using the thin-layer chromatogram binding assay. The wild-type bacteria bound to N-acetyllactosaminebased gangliosides with terminal 3-linked NeuAc, while gangliosides with terminal NeuGc 3, NeuAc 6, or NeuAc 8NeuAc 3 were not recognized. The factors affecting binding affinity were identified as (i) the length of the N-acetyllactosamine carbohydrate chain, (ii) the branches of the carbohydrate chain, and (iii) fucose substitution of the N-acetyllactosamine core chain. While the J99/NAP mutant strain displayed a ganglioside binding pattern identical to that of the parent J99 wild-type strain, no ganglioside binding was obtained with the J99/SabA mutant strain, demonstrating that the SabA adhesin is the sole factor responsible for the binding of H. pylori bacterial cells to gangliosides. * Corresponding author. Mailing address: Institute of Medical Biochemistry, P.O. Box 440, Göteborg University, SE Göteborg, Sweden. Phone: Fax: Susann.Teneberg@medkem.gu.se. Helicobacter pylori is a human- and primate-specific pathogen found in the gastric mucus layer or attached to the gastric epithelium. H. pylori infection, which affects about half the world population, results in chronic active gastritis and is a risk factor for the development of peptic ulcer disease, gastric adenocarcinoma, and gastric lymphoma (23). In order to initiate and maintain infection, microbes must first bind to receptors present on their target tissue. Therefore, interest has been directed to the elucidation of receptors for different microorganisms, many of which have been demonstrated to be glycosphingolipids (14, 25). Initial studies of potential receptors for H. pylori suggested that acid glycosphingolipids, such as the GM3 ganglioside and sulfatide (7, 27), can function as receptors for the bacterium. (The glycosphingolipid nomenclature follows the recommendations of the International Union of Pure and Applied Chemistry-International Union of Biochemistry Commission on Biochemical Nomenclature [Commission on Biochemical Nomenclature for Lipids] [5a, 5b, 5c]. It is assumed that Gal, Glc, GlcNAc, GalNAc, and NeuAc are of the D configuration; that Fuc is of the L configuration; and that all sugars are present in the pyranose form. In the shorthand nomenclature for fatty acids and bases, the number before the colon refers to the carbon chain length and the number after the colon gives the total number of double bonds in the molecule. Fatty acids with a 2-hydroxy group are denoted by the prefix h before the abbreviation, e.g., h16:0. For long-chain bases, d denotes dihydroxy and t denotes trihydroxy. Thus, d18:1 designates sphingosine [1,3-dihydroxy-2-aminooctadecene] and t18:0 designates phytosphingosine [1,3,4-trihydroxy-2-aminooctadecane].) Other receptors subsequently reported include gangliotetraosylceramide (17), the Le b antigen (3), NeuAc 3-neolactotetraosylceramide (20), lactosylceramide (1), and lactotetraosylceramide (38). In a separate series of studies, the binding of H. pylori to sialic acid-containing glycoconjugates from a variety of origins was demonstrated (21, 22). Two recent studies have demonstrated that the gangliosides sialyl-neolactohexosylceramide NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (26) and sialyl-dimeric- Lewis x NeuAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4(Fuc 3) GlcNAc 3Gal 4Glc 1Cer (19) are high-affinity H. pylori receptors. The H. pylori adhesin (SabA) that mediates binding to sialyl-le x, and the gene encoding it (saba), were also identified in the second study. The primary target tissue of H. pylori, i.e., the human gastric epithelium, has a very low content of sialic acid (18). However, H. pylori also interacts with sialylated glycoconjugates of human neutrophil granulocytes (22), and several of the identified H. pylori-binding gangliosides are also present in human neutrophils (32, 33). The aim of the present study was to further investigate the structural requirements for binding of H. pylori to complex gangliosides. The human neutrophil gangliosides are a very complex mixture, and isolation of pure ganglioside species is difficult to achieve (32, 33). Therefore, gangliosides were instead isolated from a range of different sources in which the occurrence of complex gangliosides has been described (e.g., human erythrocytes, bovine erythrocytes, rabbit thymus, human meconium, and human cancer tissues [34]) and were characterized by mass spectrometry and proton nuclear magnetic resonance (NMR). Binding of representative sialic acid binding H. pylori strains, and mutant H. pylori strains with knockout of the sialic acid binding adhesin SabA and the 1519

2 1520 ROCHE ET AL. INFECT. IMMUN. neutrophil-activating protein HPNAP, to the gangliosides was assessed by means of the chromatogram binding assay. MATERIALS AND METHODS Ganglioside preparations. For the isolation of gangliosides, a number of tissues previously reported to contain complex gangliosides, e.g., human erythrocytes, bovine erythrocytes, rabbit thymus, human meconium, and human cancers (34), were collected. Isolation of total acid glycosphingolipid fractions was done as described previously (12). Briefly, the tissues were lyophilized, followed by extraction in two steps with chloroform-methanol (2:1 and 9:1 [vol/vol]) in a Soxhlet apparatus. The material obtained was pooled and subjected to mild alkaline hydrolysis and dialysis, followed by separation on a silicic acid column. Acid and nonacid glycosphingolipids were separated on a DEAE column. The acid glycosphingolipid fractions were separated by DEAE-Sepharose chromatography, followed by repeated silicic acid chromatography, and final separation was achieved using high-performance liquid chromatography on a Kromasil 5 silica column 250 mm long, with an inner diameter of 10 mm and a particle size of 5 m (Phenomenex, Torrance, Calif.), using linear gradients of chloroform-methanol-water (60:35:8 to 40:40:12 or 65:25:4 to 40:40:12 [vol/vol]) over 180 min, with a flow rate of 2 ml/min. The 2-ml fractions collected were analyzed by thin-layer chromatography and anisaldehyde staining (see below), and the H. pylori-binding activity was assessed using the chromatogram binding assay (see below). The fractions were pooled according to mobility on thin-layer chromatograms and their H. pylori-binding activities. Reference glycosphingolipids. Reference glycosphingolipids were isolated and characterized at the Institute of Medical Biochemistry, Göteborg University, Göteborg, Sweden. Structural characterization was performed using proton NMR (15), mass spectrometry (28), and degradation studies (31, 40). Sialyl-Le x hexaglycosylceramide was purchased from ARC, Edmonton, Canada. Bacterial strains, growth conditions, and labeling. H. pylori strain CCUG was obtained from the Culture Collection of the University of Göteborg (CCUG). Strain J99 and the construction of the saba(jhp662) mutant (designated the J99/SabA mutant) were described previously (19). The construction of the J99/NAP mutant will be described elsewhere (M. Hurtig, unpublished data). Bacteria were grown on brucella medium (Difco Laboratories, Irvine, Calif.) containing 10% fetal calf serum (Harlan Sera-Lab, Loughborough, United Kingdom) inactivated at 56 C and BBL IsoVitale X Enrichment (Becton Dickinson Microbiology Systems, Franklin Lakes, N.J.). The mutant strain J99/SabA was cultured on the same medium supplemented with chloramphenicol (20 g/ml). Bacteria were radiolabeled by the addition of 50 Ci of [ 35 S]methionine (Amersham Pharmacia Biotech, Little Chalfont, United Kingdom) diluted in 0.5 ml of phosphate-buffered saline (PBS), ph 7.3, to the culture plates. After incubation for 12 to 72 h at 37 C under microaerophilic conditions, the bacteria were harvested and centrifuged three times in PBS. Alternatively, colonies were inoculated (10 5 CFU/ml) in Ham s F12 medium (Invitrogen Corp., Carlsbad, Calif.) supplemented with 10% heat-inactivated fetal calf serum and 50 Ci of [ 35 S]methionine. The culture bottles were incubated with shaking under microaerophilic conditions at 37 C for 24 h. Bacterial cells were harvested by centrifugation and washed three times with PBS. In both cases, the bacteria were finally resuspended in PBS containing 2% (wt/vol) bovine serum albumin (PBS-BSA) to 10 8 CFU/ml. Both labeling procedures resulted in suspensions with specific activities of 1 cpm per 100 H. pylori organisms. Thin-layer chromatography. Total acid glycosphingolipid fractions (40 g) or pure gangliosides ( to 4 g) were separated on aluminum-backed silica gel 60 high-performance thin-layer chromatography plates (Merck, Darmstadt, Germany) using chloroform-methanol-water (60:35:8 [vol/vol/vol]) or chloroformmethanol- 0.25% KCl in water (50:40:10 [vol/vol/vol]) as a solvent system. Chemical detection of glycosphingolipids on thin-layer chromatograms was carried out using anisaldehyde (39) or resorcinol (35) reagent. Chromatogram binding assay. The chromatogram binding assay was essentially carried out as described previously (13). Dried thin-layer chromatograms with separated glycosphingolipids were treated in 0.5% polyisobutylmethacrylate (wt/vol) (Aldrich Chemical Company Inc., Milwaukee, Wis.) in diethylethern-hexane (1:5 [vol/vol]) for 1 min and then air dried. To reduce nonspecific binding, the plates were incubated in PBS-BSA containing 0.1% (wt/vol) NaN 3 and 0.1% (vol/vol) Tween 20 at room temperature for 2 h. The plates were then incubated for 2hatroom temperature with 35 S-labeled H. pylori diluted in PBS-BSA. Following the final wash and drying, autoradiography was carried out overnight using Biomax film (Eastman Kodak Company, Rochester, N.Y.). Derivatization of gangliosides. Gangliosides were permethylated using sodium hydroxide and methyl iodide in dimethyl sulfoxide as described previously (16). Reduction of permethylated samples was carried out using LiAlH 4 in diethylether (9). FAB and EI mass spectrometry. Negative-ion fast atom bombardment (FAB) and electron ionization (EI) mass spectra were obtained on an SX 102A mass spectrometer (JEOL, Toyko, Japan). Negative-ion FAB mass spectra of native gangliosides were obtained using Xe atom bombardment (6 ev), an acceleration voltage of 8 kv, and triethanolamine as a matrix. EI spectra of derivatized glycosphingolipids were obtained with an ionization voltage of 70 ev, an ionization current of 300 A, and an acceleration voltage of 8 kv. The temperature was raised from 150 to 410 C at a rate of 10 C/min. For the collection of both FAB and EI spectra, a resolution of 1,000 was used. Proton NMR spectroscopy. 1H NMR spectra were acquired on Varian 500- and 600-MHz spectrometers at 30 C. The samples were dissolved in dimethyl sulfoxide-d 2 O (98:2 [vol/vol]) after deuterium exchange. RESULTS Ganglioside preparations. To be able to dissect the ganglioside binding preferences of H. pylori, a ganglioside library was compiled (summarized in Table 1). Each ganglioside was characterized by mass spectrometry and proton NMR. The procedure is illustrated by the following description of the isolation and characterization of one H. pylori-binding ganglioside of human erythrocytes (Table 1, no. 19). Total acid glycosphingolipids were isolated from 500 liters of pooled outdated blood group B erythrocytes by standard procedures (12), yielding 5.5 g. A subfraction of 390 mg was separated on a 700-ml DEAE-Sepharose column eluted with a linear gradient using 2,100 ml of ammonium acetate in methanol (0.05 to 0.45 M). Each 10-ml fraction collected was analyzed by thin-layer chromatography using the resorcinol reagent. The fractions were pooled according to the mobilities of the major compounds. Pooling of fractions 62 to 67 yielded 15.4 mg, and the fraction obtained had a major compound migrating in the sialyl-neolactotetraosylceramide region. However, when it was tested for H. pylori-binding activity using the chromatogram binding assay, a slow-migrating binding-active compound was detected. The 15.4 mg of acid glycosphingolipids was further separated by high-performance liquid chromatography using a linear gradient of chloroform-methanol-water (60:35:8 to 40:40:12 [vol/vol/vol]). The H. pylori-binding compound eluted in fractions 39 to 56, which yielded 0.9 mg after pooling. Negative-ion FAB mass spectrometry of H. pylori-binding ganglioside from human erythrocytes. The negative-ion FAB mass spectrum of the H. pylori-binding ganglioside (not shown) had molecular ions at m/z 2639, 2667, and 2683, indicating a ganglioside with one NeuAc, one Fuc, three HexNAc, and six Hex and d18:1-22:0, d18:1-24:0 and d18:1-h24:0 ceramides. A series of fragment ions, obtained by sequential loss of terminal carbohydrate units from the ion at m/z 2667, were observed at m/z 2505, 2360, 2197, and 1994, demonstrating a Hex-Fuc-Hex- HexNAc sequence. Further sequence ions were observed at m/z 1703, 1541, 1338, 1176, 973, 811, and 648, suggesting a NeuAc-Hex-HexNAc-Hex-HexNAc-Hex-Hex sequence with a d18:1-24:0 ceramide. Since an internal NeuAc is unlikely, the result from negative-ion FAB mass spectrometry thus suggested a branched undecaosylceramide with a Hex-Fuc-Hex-HexNAc-(NeuAc- Hex-HexNAc)Hex-HexNAc-Hex-Hex sequence and a d18:1-24:0 ceramide.

3 VOL. 72, 2004 H. PYLORI AND COMPLEX GANGLIOSIDES 1521 TABLE 1. Ganglioside library and results of H. pylori binding Binding a No. Trivial name Structure CCUG 17874, J99, and J99/ NAP J99/SabA Source 1 NeuAc-GM3 NeuAc 3Gal 4Glc 1Cer Human meconium 2 NeuAc 3SPG NeuAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Human erythrocytes 3 NeuAc 6SPG NeuAc 6Gal 4GlcNAc 3Gal 4Glc 1Cer Human meconium 4 NeuGc 3SPG NeuGc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Rabbit thymus 5 NeuAc-DPG NeuAc 8NeuAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Human kidney 6 NeuAc 3-Le a NeuAc 3Gal 3(Fuc 4)GlcNAc 3Gal 4Glc 1Cer / b Human gallbladder cancer 7 NeuAc 3-Le x NeuAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer Commercial 8 NeuAc 3-nLc 6 NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Human hepatoma 9 NeuGc 3-nLc 6 NeuGc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Rabbit thymus 10 NeuAc 3-nLc 8 NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Human erythrocytes 11 NeuGc 3-nLc 8 NeuGc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer Rabbit thymus 12 VIM-2 NeuAc 3Gal 4GlcNAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer Human colon cancer 13 NeuAc 3-dimer-Le x NeuAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer Human gallbladder cancer 14 Gal 4GlcNAc 6(NeuAc 6Gal 4GlcNAc 3)Gal 4Glc 1Cer Bovine buttermilk 15 Gal 4GlcNAc 6(NeuAc 6Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer Human meconium 16 NeuAc-G-10 NeuAc 3Gal 4GlcNAc 6(NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer Human erythrocytes 17 NeuGc-G-10 NeuGc 3Gal 4GlcNAc 6(NeuGc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer Bovine erythrocytes 18 Gal 3Gal 4GlcNAc 6(NeuGc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer Bovine erythrocytes 19 G9-B Gal 3(Fuc 2)Gal 4GlcNAc 6(NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer Human erythrocytes a Binding is defined as follows:, binding when 0.5 g of the glycosphingolipid was applied on the thin-layer chromatogram;, occasional binding at 0.5 g;, no binding even at 4 g. b Binding of the J99 strain to NeuAc 3-Le a was occasionally observed (detection limit, 0.5 g), while no binding of the CCUG strain to this compound was obtained.

4 1522 ROCHE ET AL. INFECT. IMMUN. FIG. 1. EI mass spectrum of the permethylated H. pylori-binding ganglioside from human erythrocytes. Above the spectrum is a simplified formula for interpretation, representing the species with sphingosine and nonhydroxy 24:0 fatty acid. The analysis was done as described in Materials and Methods. The spectrum was recorded at 380 C. The peak at m/z 354 is due to a contaminant. EI mass spectrometry of permethylated H. pylori-binding ganglioside from human erythrocytes. EI mass spectrometry of the permethylated H. pylori-binding ganglioside (Fig. 1) confirmed the presence of two branches, since the ions at m/z 825 and 793 (825 32) are characteristic of a terminal NeuAc- Hex-HexNAc sequence, while the ions at m/z 842 and 810 (842 32) demonstrated a terminal (Hex-Fuc-HexHexNAc) sequence. In addition, the ions at m/z 376 and 344 (376 32) indicated a terminal NeuAc, while the ions at m/z 219 and 187 (219 32) demonstrated a terminal Hex. A terminal Fuc was indicated by the ions at m/z 189 and m/z 157 (189 32). A type 2 carbohydrate chain (Hex 4HexNAc) was indicated by the ion at m/z 182 (10, 11). The ion at m/z 660 was derived from a d18:0-24:0 ceramide. EI mass spectrometry of permethylated and LiAlH 4 -reduced H. pylori-binding ganglioside from human erythrocytes. EI mass spectrometry of permethylated and reduced glycosphingolipids gives dominant immonium ions, representing the complete carbohydrate chain and the fatty acid, along with rearrangement ions obtained by sequential loss of terminal carbohydrate units from the immonium ions (9). In the spectrum of the permethylated and reduced ganglioside from human erythrocytes (Fig. 2), the ion observed at m/z 2501 was obtained by loss of a terminal NeuAc from the immonium ion of a Hex-Fuc-Hex-HexNAc-(NeuAc-Hex-HexNAc)Hex- HexNAc-Hex-Hex sequence with nonhydroxy 24:0 fatty acid ( ; see the interpretation formula in Fig. 2). Further rearrangement ions were found at m/z 2297 ( ) and at m/z 2066 ( ), confirming a terminal NeuAc-Hex- HexNAc sequence. Thereafter, rearrangement ions obtained by the loss of a terminal Hex-(Fuc)-Hex were found at m/z 1700 ( ) and at m/z 1466 ( ), followed by a rearrangement ion obtained by the loss of a terminal Hex-(Fuc)-Hex-HexNAc at m/z 1238 ( ). Further rearrangement ions were found at m/z 1049, 818, and 614. Again, two terminal carbohydrate sequence ions were obtained. The ion at m/z 769 confirmed the terminal NeuAc-Hex- HexNAc sequence, while the ion at m/z 828 confirmed a terminal Hex-(Fuc)-Hex-HexNAc sequence. Sphingosine with a nonhydroxy fatty acid was indicated by the ion at m/z 632. Thus, by mass spectrometry of the ganglioside from human erythrocytes, a Hex-(Fuc)-Hex-HexNAc-(NeuAc-Hex- HexNAc)Hex-HexNAc-Hex-Hex sequence with a d18:1-24:0 ceramide was established. Proton NMR of H. pylori-binding ganglioside from human erythrocytes. The anomeric region of the 600-MHz proton NMR spectrum of the human erythrocyte ganglioside (Fig. 3A) is in agreement with a branched structure having the sugar composition indicated by mass spectrometry. In this anomeric region, two signals are evident at 5.15 and 4.97 ppm, which by comparison with earlier data on blood group B-active glycosphingolipids from human erythrocytes (4) can be ascribed to Fuc 2 and Gal 3 of a blood group B determinant. Irrespective of whether this determinant is located on the three- or six-linked branch of the structure, the anomeric signal of a Fuc 2- and Gal 3-substituted Gal 4 is expected at 4.39 ppm, as is also observed. Furthermore, the presence of a GlcNAc anomeric signal at 4.36 ppm, in addition to the lack of anomeric signals in the range 4.4 to 4.5 ppm, shows that the B

5 VOL. 72, 2004 H. PYLORI AND COMPLEX GANGLIOSIDES 1523 FIG. 2. EI mass spectrum of the permethylated and reduced H. pylori-binding ganglioside from human erythrocytes. Above the spectrum is a simplified formula for interpretation, representing the species with sphingosine and nonhydroxy 24:0 fatty acid. The analysis was done as described in Materials and Methods. The spectrum was recorded at 340 C. determinant is situated on the six-linked branch (4). Therefore, the sialic acid must be located on the three-linked branch, which is confirmed by the presence of two overlapping GlcNAc signals, centered around 4.65 ppm, belonging to the GlcNAc residues of a neolactotetra core and three branch, respectively. The NeuAc residue is 3 linked, as seen by the presence of the H3eq resonance at 2.75 ppm (Fig. 3B), and is attached to a Gal 4 residue, as evidenced by the doublet at 4.19 ppm (8). The remaining anomeric signals stemming from the core are the branching Gal 4 residue at 4.30 ppm, the second Gal 4 residue at 4.26 ppm, and the Glc 1 residue at 4.16 ppm, in accordance with earlier data (4, 8). Additional resonances consistent with the assignments made above are found at 4.11 and 1.06 ppm (Fuc 2 H5 and H6, respectively), as well as four methyl resonances from the N-acetamido moieties of the NeuAc residue (1.88 ppm) and the GlcNAc residues (1.84, 1.82, and 1.81 ppm). Overall, the spectral features are very similar to the corresponding spectrum of the blood group A-containing structure previously published (9). Thus, by mass spectrometry and proton NMR of the H. pylori-binding ganglioside, a Gal 3(Fuc 2)Gal 4GlcNAc 6 (NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer, i.e., a branched undecaglycosylceramide carrying a blood group B determinant on the 6-linked branch and a terminal sialic acid on the 3-linked branch, was identified. This ganglioside was previously characterized by Kannagi et al. and designated ganglioside G9-B (8). Binding of H. pylori to ganglioside library. The H. pylori strains CCUG and J99, used in the chromatogram binding experiments, are both sialic acid binding (19). In addition, two mutant strains were used, strain J99/SabA, with knockout of the sialic acid binding adhesin SabA (19), and strain J99/ NAP, with knockout of the NeuAc 3Gal 4GlcNAc 3Gal 4 GlcNAc -binding neutrophil-activating protein of H. pylori, HPNAP (36). (i) Binding and nonbinding gangliosides. The results from binding of the H. pylori strains to the isolated gangliosides are shown in Fig. 4 to 8 and summarized in Table 1. Gangliosides were classified as nonbinding when no binding was obtained although 4 g of the compound was on the thin-layer plates. As shown in Fig. 4, the sialic acid binding wild-type strains CCUG and J99 recognized the NeuAc-terminated gangliosides NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc-neolactohexaocylceramide) (lane 1), NeuAc 3 Gal 4GlcNAc 6(NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3 Gal 4Glc 1Cer (NeuAc-G-10 ganglioside) (lane 3), and Gal 3(Fuc 2)Gal 4GlcNAc 6(NeuAc 3Gal 4GlcNAc 3) Gal 4GlcNAc 3Gal 4Glc 1Cer (G9-B ganglioside) (lane 6) but not the corresponding NeuGc-terminated isostructures (lanes 2, 4, and 5). Other gangliosides recognized were NeuAc 3(Gal 4GlcNAc 3) 3 Gal 4Glc 1Cer (NeuAc-neolactooctaaocylceramide) (Fig. 6, lanes 1 to 7), NeuAc 3 Gal 4GlcNAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer (VIM-2 ganglioside) (Fig. 8, lanes 6 to 10), and NeuAc 3 Gal 4(Fuc 3)GlcNAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer (sialyl-dimeric-le x ganglioside) (Fig. 8, lanes 1 to 5). Occasional binding to NeuAc 3-neolactotetraosylceramide (Table 1, no. 2, and Fig. 6, lanes 1 to 7) was also detected, while

6 1524 ROCHE ET AL. INFECT. IMMUN. FIG. 3. Proton NMR spectrum from 4 to 5.2 ppm (A) and from 2.58 to 2.98 ppm (B) at 600 MHz of the H. pylori-binding ganglioside from human erythrocytes (30 C). The sample was dissolved in dimethyl sulfoxide-d 2 O (98:2 [vol/vol]) after deuterium exchange. The broad peak(s) centered around 4.8 ppm (indicated by an asterisk) represents a contaminant of unknown origin. NeuAc 6-neolactotetraosylceramide (Table 1, no. 3) was nonbinding, in line with previous reports (6, 20). The NeuAc 6-carrying gangliosides Gal 4GlcNAc 6(NeuAc 6 Gal 4GlcNAc 3)Gal 4Glc 1Cer (Table 1, no. 14) and Gal 4GlcNAc 6(NeuAc 6Gal 4GlcNAc 3)Gal 4GlcNAc 3 Gal 4Glc 1Cer (Table 1, no. 15) were also nonbinding. No binding to NeuGc 3-neolactotetraosylceramide (Table 1, no. 4) or disialyl-neolactotetraosylceramide (Table 1, no. 5) was obtained. Occasional binding to the sialyl-le x hexaglycosylceramide (Table 1, no. 7) was observed. The sialyl-le a hexaglycosylceramide (Table 1, no. 6) was not recognized by the CCUG strain, while the J99 wild-type strain occasionally bound to this compound. In all other respects, the ganglioside binding pattern obtained with the J99 wild-type strain was identical to the pattern observed with the CCUG strain (Fig. 4 and 5; summarized in Table 1). However, the J99/

7 VOL. 72, 2004 H. PYLORI AND COMPLEX GANGLIOSIDES 1525 FIG. 4. Binding of H. pylori to NeuAc- and NeuGc-terminated gangliosides. Shown are chemical detection by anisaldehyde (A) and autoradiograms obtained by binding of the 35 S-labeled H. pylori strains CCUG (B) and J99 (C). The gangliosides were separated on aluminumbacked silica gel plates, using chloroform- methanol- 0.25% KCl in water (50:40:10 [vol/vol/vol]) as a solvent system, and the binding assay was performed as described in Materials and Methods. Lanes 1, NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-neolactohexaocylceramide) of human hepatoma (2 g); lanes 2, NeuGc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuGc 3-neolactohexaocylceramide) of rabbit thymus (2 g); lanes 3, NeuAc 3Gal 4GlcNAc 6 (NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc- G-10 ganglioside) of human erythrocytes (2 g); lanes 4, NeuGc 3Gal 4GlcNAc 6 (NeuGc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuGc-G-10 ganglioside) of bovine erythrocytes (2 g); lanes 5, Gal 3Gal 4GlcNAc 6 (NeuGc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3 Gal 4Glc 1Cer of bovine erythrocytes (2 g); lanes 6, Gal 3(Fuc 2)Gal 4GlcNAc 6 (NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer (G9-B ganglioside) of human erythrocytes (2 g). Autoradiography was performed for 12 h. SabA strain failed to bind to any of the gangliosides recognized by the parent strain (Fig. 5E; summarized in Table 1). (ii) Comparison of relative binding affinities. Binding of radiolabeled H. pylori to glycosphingolipids diluted in microtiter wells was initially attempted in order to appreciate the relative binding affinities for the various binding-active gangliosides. However, the results obtained were not reproducible. Therefore, binding assays using dilutions of gangliosides on thin-layer plates were utilized. In initial experiments, we found that binding to NeuAc 3-neolactohexaosylceramide and the NeuAc-dimeric-Le x ganglioside was saturated at 100 pmol, and therefore, lower concentration ranges (1 to 100 pmol) were utilized. The results presented in Fig. 6 to 8 are representative of a large number of binding assays. A general observation is that this type of experiment allows comparison only between compounds applied on the same chromatogram. Although the level of binding varied somewhat between different batches of radiolabeled bacteria, the same relationships between the binding-active gangliosides were repeatedly obtained. (a) Effect of carbohydrate chain length. Binding of H. pylori strain CCUG to dilution series of NeuAc 3-neolactotetraosylceramide (Table 1, no. 2), NeuAc 3-neolactohexaosylceramide (Table 1, no. 8), and NeuAc 3-neolactooctaosylceramide (Table 1, no. 10) demonstrated a clear preference for NeuAc 3-neolactooctaosylceramide (Fig. 6). (b) Effect of branching. To evaluate the effect of branching of the carbohydrate chain, the levels of binding of H. pylori strain CCUG to NeuAc 3-neolactohexaosylceramide (Table 1, no. 8), the NeuAc-G-10 ganglioside (Table 1, no. 16), and the G9-B ganglioside (Table 1, no. 19) were compared. As shown in Fig. 7, the blood group B type 2 epitope on the 6-linked branch of the G9-B ganglioside impaired binding compared to the linear NeuAc 3-neolactohexaosylceramide. On the other hand, the NeuAc-G-10 ganglioside was the preferred ligand, which indicates that the NeuAc 3Gal 4GlcNAc sequence on the 6-linked branch in this case increased the binding affinity. (c) Effects of fucose residues. To investigate the effects of fucose branches, the relative levels of binding of H. pylori strain CCUG to NeuAc 3-neolactohexaosylceramide (Table 1, no. 8), the VIM-2 ganglioside (Table 1, no. 12), and the NeuAc 3-dimeric-Le x ganglioside (Table 1, no. 13) were compared. As shown in Fig. 8, the bacteria bound with higher affinity to the VIM-2 and the NeuAc 3-dimeric-Le x gangliosides than to NeuAc 3-neolactohexaosylceramide. DISCUSSION Recognition of sialic acid-containing glycoconjugates by certain H. pylori strains has been repeatedly demonstrated (5, 6, 7, 19 22, 26, 27). In the present study, a library of gangliosides was collected and used for dissection of H. pylori-binding preferences utilizing representative sialic acid-recognizing H. pylori strains and mutant strains with knockout of putative ganglioside binding proteins. Two ganglioside binding proteins of H. pylori have been identified, the SabA adhesin and the NeuAc 3Gal 4 GlcNAc 3Gal 4GlcNAc -binding neutrophil-activating protein HPNAP (19, 36). HPNAP is a major immunogen of H. pylori (29) and is to some extent associated with the bacterial cell surface (2). Since whole bacterial cells also bind to NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc -terminated glycosphingolipids, it is tempting to speculate that this interaction is due to surface-associated HPNAP. However, after knockout of the gene coding for HPNAP, the bacteria still recognized glycosphingolipids with terminal NeuAc 3Gal 4GlcNAc 3 Gal 4GlcNAc. The binding of NeuAc 3Gal 4GlcNAc 3 Gal 4GlcNAc -terminated gangliosides, as well as interaction with all other gangliosides, however, was lost after knockout of the gene for the SabA adhesin, demonstrating that ganglioside

8 1526 ROCHE ET AL. INFECT. IMMUN. Downloaded from FIG. 5. Comparison of binding of H. pylori strains CCUG 17874, J99, J99/NAP, and J99/SabA. (A) Chemical detection by anisaldehyde. (B to E) Autoradiograms obtained by binding of 35 S-labeled H. pylori strains CCUG (B), J99 (C), J99/NAP (D), and J99/SabA (E). The gangliosides were separated on aluminum-backed silica gel plates, using chloroform- methanol- 0.25% KCl in water (50:40:10 [vol/vol/vol]) as a solvent system, and the binding assays were performed as described in Materials and Methods. Lanes 1, gangliosides of human neutrophil granulocytes (20 g); lanes 2, NeuGc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuGc 3-neolactohexaocylceramide) of rabbit thymus (2 g); lanes 3, NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-neolactohexaocylceramide) of human hepatoma (1 g); lanes 4, NeuAc 3Gal 4GlcNAc 6 (NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc-G-10 ganglioside) of human erythrocytes (1 g); lanes 5, Gal 3(Fuc 2)Gal 4GlcNAc 6 (NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer (G9-B ganglioside) of human erythrocytes (1 g); lanes 6, Gal 3(Fuc 2)Gal 4GlcNAc 3Gal 4Glc 1Cer (B6 type 2 hexaglycosylceramide) of human erythrocytes (4 g); lanes 7, Gal 3GalNAc 4Gal 4Glc 1Cer (gangliotetraosylceramide) of mouse feces (4 g). Autoradiography was performed for 12 to 24 h. recognition of H. pylori bacterial cells is mediated solely by the SabA adhesin. An occasional binding of the J99 strain to sialyl-le a hexaglycosylceramide was observed when 0.5 g was applied on the thin-layer plate. However, the CCUG strain did not bind to this ganglioside. Binding of the J99 strain to both sialyl-le a and sialyl-le x neoglycoproteins has also been demonstrated (19). This indicates that the SabA carbohydrate binding sites of the J99 and the CCUG strains are not identical. However, in all other respects, the CCUG strain and the J99 strain bound to gangliosides in identical manners, and both strains recognized N-acetyllactosamine-based gangliosides with terminal NeuAc 3, but not NeuAc 6, in line with previous reports (6, 20). Furthermore, gangliosides with terminal NeuGc 3 or NeuAc 8NeuAc 3 were not recognized. The factors that affected binding affinity were identified as (i) the length of the N-acetyllactosamine carbohydrate chain, (ii) the branches of the carbohydrate chain, and (iii) fucose substitution of the N-acetyllactosamine core chain. N-Acetyllactosamine core length. Preferential binding of H. pylori to NeuAc 3-neolactooctaosylceramide over NeuAc 3- neolactohexaosylceramide and NeuAc 3-neolactotetraosylceramide was observed. This effect is most likely due to improved accessibility of the carbohydrate head group when presented on a longer core chain. Divalency. Cooperative binding may account for the increased affinity for the NeuAc-G-10 ganglioside, with two NeuAc 3Gal 4GlcNAc branches, relative to the linear NeuAc 3-neolactohexaosylceramide. This is in agreement with the report of Simon et al. (30) demonstrating that multivalent albumin conjugates of sialyl-lactose (NeuAc 3 Gal 4Glc) inhibited the adherence of H. pylori to epithelial monolayers more effectively than monovalent sialyl-lactose. The lower binding affinity to the G9-B ganglioside than to on April 21, 2019 by guest

9 VOL. 72, 2004 H. PYLORI AND COMPLEX GANGLIOSIDES 1527 FIG. 6. Binding of H. pylori to serial dilutions of gangliosides. Shown is an autoradiogram obtained by binding H. pylori strain CCUG using the chromatogram binding assay. Lanes 1 to 7, serial dilutions (1 to 100 pmol) of NeuAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3- neolactotetraosylceramide) (NeuAc 3-nLc4), NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-neolactohexaocylceramide) (NeuAc 3-nLc6), and NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-neolactooctaocylceramide) (NeuAc 3-nLc8); lane 8, NeuAc 3Gal 3(Fuc 4)GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-Le a hexaglycosylceramide) (NeuAc 3-Lea), 1 mmol. The binding assay was done as described in Materials and Methods. The results from one representative experiment out of three are shown. NeuAc 3-neolactohexaosylceramide shows that the blood group B determinant on the 6-linked branch interfered with the binding process. Still, there is no absolute hindrance, since the detection level for the G9-B ganglioside was 100 pmol. This suggests that the H. pylori-binding determinants are mainly exposed on the 3 axis of the Gal 3(Fuc 2)Gal 4 GlcNAc 6(NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4 Glc 1Cer structure. Fucose branches on the N-acetyllactosamine core. The higher binding affinity for the VIM-2 ganglioside than for- NeuAc -neolactohexaosylceramide suggests that the -linked Fuc at the innermost GlcNAc contributes to the high-affinity binding of NeuAc -dimeric-le x. This fucose residue may either interact with the carbohydrate binding site of the SabA adhesin or affect the conformation of the ganglioside,providing optimal presentation of the head group. Resolution of this issue must, however, await the expression and crystallizationof the SabA adhesin. Simon et al. have demonstrated that sialyl-lactose inhibits the binding of fresh H. pylori isolates to gastrointestinal epithelial cells and even promotes the detachment of bound bacteria (30). Furthermore, oral administration of sialyl-lactose to H. pylori-infected rhesus monkeys had a curative effect in two out of six monkeys, and one monkey was transiently cleared of the infection (24). The structural features required for highaffinity H. pylori ganglioside binding outlined above (i.e., repetitive N-acetyllactosamine units, fucose branches, and di- or multivalency) may be utilized for the construction of more efficient inhibitors of H. pylori adherence. The expression of the SabA adhesin is, unlike that of the Le b -binding BabA adhesin, subject to phase variation (19). Varying numbers of bacteria expressing the SabA adhesin FIG. 7. Binding of H. pylori to serial dilutions of gangliosides. Shown is an autoradiogram obtained by binding H. pylori strain CCUG using a chromatogram binding assay. Lanes 1 to 5, serial dilutions (3 to 100 pmol) of NeuAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-Le x hexaglycosylceramide) (NeuAc 3-Lex), NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-neolactohexaocylceramide) (NeuAc 3-nLc6), NeuAc 3Gal 4GlcNAc 6(NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc-G-10 ganglioside) (NeuAc-G-10); lanes 6 to 10, serial dilution (3 to 100 pmol) of Gal 3(Fuc 2)Gal 4GlcNAc 6(NeuAc 3Gal 4GlcNAc 3)Gal 4GlcNAc 3 Gal 4Glc 1Cer (G9B ganglioside). The binding assay was done as described in Materials and Methods. The results from one representative experiment out of three are shown.

10 1528 ROCHE ET AL. INFECT. IMMUN. FIG. 8. Binding of H. pylori to serial dilutions of gangliosides. Shown is an autoradiogram obtained by binding H. pylori strain CCUG using the chromatogram binding assay. Lanes 1 to 5, serial dilutions (4 to 100 pmol) of NeuAc 3Gal 4GlcNAc 3Gal 4GlcNAc 3Gal 4Glc 1Cer (NeuAc 3-neolactohexaocylceramide) (NeuAc 3-nLc6) and NeuAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer (NeuAc-dimeric-Le x ganglioside) (NeuAc 3-dimer-Lex); lanes 6 to 10, serial dilution (4 to 100 pmol) of NeuAc 3Gal 4 GlcNAc 3Gal 4(Fuc 3)GlcNAc 3Gal 4Glc 1Cer (VIM-2 ganglioside). The binding assay was done as described in Materials and Methods. The results from one representative experiment out of three are shown. within the bacterial-cell population used in the binding assays may account for the difficulties in determining an absolute affinity of binding for a given ganglioside. However, in repeated binding assays, the same relationships between the binding-active gangliosides were observed. The biological significance of these findings requires further study. Although the sialic acid content of the normal human gastric epithelium is very low (18), gastric inflammation leads to an upregulation of the expression of sialic acid-containing glycoconjugates (20). Our present hypothesis is thus that the initial attachment of H. pylori is achieved through binding to receptors present in the normal gastric epithelium, e.g., the Le b antigen and lactotetraosylceramide. The ensuing inflammation leads to enhanced expression of sialyltransferases in the gastric mucosa, ultimately providing novel binding sites for H. pylori SabA adhesin and thereby contributing to the chronicity of the infection. In addition, it was recently demonstrated that the nonopsonic H. pylori-induced activation of human neutrophils occurs by lectinophagocytosis, i.e., recognition of sialylated glycoconjugates on the neutrophil cell surface by a bacterial adhesin leads to phagocytosis and an oxidative burst with the production of reactive oxygen metabolites (37). Thus, the sialic acid binding capacity of H. pylori may have a dual role. On one hand, it mediates adhesion of bacteria to the epithelium in the already diseased stomach, and on the other, it leads to the activation of neutrophils to an oxidative burst with the production of reactive oxygen metabolites and the release of biologically active enzymes, giving rise to further tissue damage. ACKNOWLEDGMENTS This study was supported by the Swedish Medical Research Council (grants [S.T.] and [T.B.]), the Swedish Cancer Foundation, the Swedish Medical Society, and the Lundberg Foundation. N.R. is supported by a grant from the program Glycoconjugates in Biological Systems, and M.H. is supported by the program Infection and Vaccinology, both sponsored by the Swedish Foundation for Strategic Research. The use of the Varian 500- and 600-MHz machines at the Swedish NMR Centre, Hasselblad Laboratory, Göteborg University, is gratefully acknowledged. REFERENCES 1. Ångström, J., S. Teneberg, M. Adul Milh, T. Larsson, I. Leonardsson, B.-M. Olsson, M. Ölwegård Halvarsson, D. Danielsson, I. Näslund, Å. Ljungh, T. Wadström, and K.-A. Karlsson The lactosylceramide binding specificity of Helicobacter pylori. Glycobiology 8: Blom, K., S. Lundin, I. Bölin, and A.-M. Svennerholm Flow cytometric analysis of the localization of H. pylori antigens during different growth phases. FEMS Immunol. Med. Microbiol. 30: Borén, T., P. Falk, K. A. Roth, and S. Normark Attachment of Helicobacter pylori to human gastric epithelium is mediated by blood group antigens. Science 262: Hanfland, P., M. Kordowicz, H. Niermann, H. Egge, U. Dabrowski, J. Peter- Katalinic, and J. Dabrowski Purification and structures of branched blood-group-b-active glycosphingolipids from human erythrocyte membranes. Eur. J. Biochem. 145: Hirmo, S., S. Kelm, R. Schauer, B. Nilsson, and T. Wadström Adhesion of Helicobacter pylori strains to -2,3-linked sialic acids. Glycoconj. J. 13: a.IUPAC-IUB Commission on Biochemical Nomenclature The nomenclature of lipids. Recommendations Biochem. J. 171: b.IUPAC-IUB Commission on Biochemical Nomenclature Abbreviated terminology of oligosaccharide chains. Recommendations J. Biol. Chem. 257: c.IUPAC-IUB Commission on Biochemical Nomenclature Nomenclature of glycolipids. Recommendations Eur. J. Biochem. 257: Johansson, L., and H. Miller-Podraza Analysis of 3- and 6-linked sialic acids in mixtures of gangliosides using blotting to polyvinylidene difluoride membranes, binding assays and various mass spectrometry techniques with application to recognition by Helicobacter pylori. Anal. Biochem. 265: Kamisago, S., M. Iwamori, T. Tai, K. Mitamura, Y. Yazaki, and K. Sugano Role of sulfatides in adhesion of Helicobacter pylori to gastric cancer cells. Infect. Immun. 64: Kannagi, R., D. Roelcke, K. A. Peterson, Y. Okada, S. B. Levery, and S.-I. Hakomori Characterization of an epitope (determinant) structure in a developmentally regulated glycolipid antigen defined by a cold agglutinin F1, recognition of alpha-sialosyl and alpha-l-fucosyl groups in a branched structure. Carbohydr. Res. 120: Karlsson, K.-A Carbohydrate composition and sequence analysis of a derivative of brain disialo ganglioside by mass spectrometry, with molecular weight ions at m/e Potential use in the specific microanalysis of cell surface components. Biochemistry 13: Karlsson, K.-A Microscale fingerprinting of blood-group fucolipids by mass spectrometry, p In L. A. Witting (ed.), Glycolipid methodology. American Oil Society, Champaign, Ill. 11. Karlsson, K.-A Mass-spectrometric sequence studies of lipid-linked

11 VOL. 72, 2004 H. PYLORI AND COMPLEX GANGLIOSIDES 1529 oligosaccharides, blood-group fucolipids, gangliosides and related cell-surface receptors. Progr. Chem. Fats Other Lipids 16: Karlsson, K.-A Preparation of total non-acid glycolipids for overlay analysis of receptors for bacteria and viruses and for other studies. Methods Enzymol. 138: Karlsson, K.-A., and N. Strömberg Overlay and solid-phase analysis of glycolipid receptors for bacteria and viruses. Methods Enzymol. 138: Karlsson, K.-A Animal glycosphingolipids as membrane attachment sites for bacteria. Annu. Rev. Biochem. 58: Koerner, T. A. W., Jr., J. H. Prestegard, P. C. Demou, and R. K. Yu High-resolution proton NMR studies of gangliosides. 1. Use of homonuclear two-dimensional spin-echo J-correlated spectroscopy for determination of residue composition and anomeric configurations. Biochemistry 22: Larsson, G., H. Karlsson, G. C. Hansson, and W. Pimlott Application of a simple methylation procedure for the analysis of glycosphingolipids. Carbohydr. Res. 161: Lingwood, C. A., M. Huesca, and A. Kuksis The glycerolipid receptor for Helicobacter pylori (and exoenzyme-s) is phosphatidylethanolamine. Infect. Immun. 60: Madrid, J. F., J. Ballesta, M. T. Castells, and F. Hernandez Glycoconjugate distribution in the human fundic mucosa revealed by lectin- and glycoprotein-gold cytochemistry. Histochemistry 95: Mahdavi, J., B. Sondén, L. Forsberg, M. Hurtig, F. O. Olfat, L. Forsberg, N. Roche, J. Ångström, T. Larsson, S. Teneberg, K.-A. Karlsson, S. Altraja, T. Wadström, D. Kersulyte, D. E. Berg, A. Dubois, C. Petterson, K.-E. Magnusson, T. Norberg, F. Lindh, B. B. Lundskog, A. Arnqvist, L. Hammarström, and T. Borén Helicobacter pylori SabA adhesin in persistent infection and chronic inflammation. Science 297: Miller-Podraza, H., M. Abul Milh, S. Teneberg, and K.-A. Karlsson Binding of Helicobacter pylori to sialic acid-containing glycolipids of various origins separated on thin-layer chromatograms. Infect. Immun. 65: Miller-Podraza, H., J. Bergström, M. Abul Milh, and K.-A. Karlsson Recognition of glycoconjugates by Helicobacter pylori. Comparison of two sialic acid-dependent specificities based on haemagglutination and binding to human erythrocyte glycoconjugates. Glycoconj. J. 14: Miller-Podraza, H., J. Bergström, S. Teneberg, M. Abul Milh, M. Longard, B.-M. Olsson, L. Uggla, and K.-A. Karlsson Helicobacter pylori and neutrophils. Sialic acid-dependent binding to various isolated glycoconjugates. Infect. Immun. 67: Montecucco, C., and R. Rappuoli Living dangerously: how Helicobacter pylori survives in the human stomach. Nat. Rev. Mol. Cell Biol. 2: Mysore, J. V., T. Wigginton, P. M. Simon, D. Zopf, L. M. Heman-Ackah, and A. Dubois Treatment of Helicobacter pylori infection in rhesus monkeys using a novel antiadhesion compound. Gastroenterology 117: Ofek, I., and R. J. Doyle Bacterial lectins as adhesins, p In Bacterial adhesion to cells and tissues. Chapman & Hall, New York, N.Y. Editor: J. N. Weiser 26. Roche, N., J. Ångström, T. Larsson, and S. Teneberg Helicobacter pylori-binding gangliosides of human gastric adenocarcinoma. Glycobiology 11: Saitoh, T., H. Natomi, W. Zhao, K. Okuzumi, K. Sugano, M. Iwamori, and Y. Nagai Identification of glycolipid receptors for Helicobacter pylori by TLC-immunostaining. FEBS Lett. 282: Samuelsson, B. E., W. Pimlott, and K.-A. Karlsson Mass spectrometry of mixtures of intact glycosphingolipids. Methods Enzymol. 193: Satin, B., G. Del Guidice, V. Della Bianca, S. Dusi, C. Laudanna, F. Tonello, D. Kelleher, R. Rappuoli, C. Montecucco, and F. Rossi The neutrophil-activating protein (HP-NAP) of Helicobacter pylori is a protective antigen and a major virulence factor. J. Exp. Med. 191: Simon, P. M., P. L. Goode, A. Mobasseri, and D. Zopf Inhibition of Helicobacter pylori binding to gastrointestinal epithelial cells by sialic acidcontaining oligosaccharides. Infect. Immun. 65: Stellner, K., H. Saito, and S.-I. Hakomori Determination of aminosugar linkages in glycolipids by methylation. Aminosugar linkages of ceramide pentasaccharides of rabbit erythrocytes and of Forssman antigen. Arch. Biochem. Biophys. 155: Stroud, M. R., K. Handa, M. E. K. Salyan, K. Ito, S. B. Levery, S.-I. Hakomori, B. B. Reinhold, and V. N. Reinhold Monosialogangliosides of human myelogenous leukemia HL60 cells and normal human leukocytes. 1. Separation of E-selectin binding from nonbinding gangliosides, and absence of sialosyl-le x having tetraosyl to octaosyl core. Biochemistry 35: Stroud, M. R., K. Handa, M. E. K. Salyan, K. Ito, S. B. Levery, S.-I. Hakomori, B. B. Reinhold, and V. N. Reinhold Monosialogangliosides of human myelogenous leukemia HL60 cells and normal human leukocytes. 2. Characterization of E-selectin binding fractions, and structural requirements for physiological binding to E-selectin. Biochemistry 35: Stults, C. L. M., C. C. Sweeley, and B. A. Macher Glycosphingolipids: structure, biological source and properties. Methods Enzymol. 179: Svennerholm, L Quantitive estimation of sialic acids. II. A colorimetric resorcinol-hydrochloric acid method. Biochim. Biophys. Acta 24: Teneberg, S., H. Miller-Podraza, H. C. Lampert, D. J. Evans, Jr., D. G. Evans, D. Danielsson, and K.-A. Karlsson Carbohydrate binding specificity of the neutrophil-activating protein of Helicobacter pylori. J. Biol. Chem. 272: Teneberg, S., M. Jurstrand, K.-A. Karlsson, and D. Danielsson Inhibition of Helicobacter pylori-induced activation of human neutrophils by sialylated oligosaccharides. Glycobiology 10: Teneberg, S., I. Leonardsson, H. Karlsson, P.-Å. Jovall, J. Ångström, D. Danielsson, I. Näslund, Å. Ljungh, T. Wadström, and K.-A. Karlsson Lactotetraosylceramide, a novel glycosphingolipid receptor for Helicobacter pylori, present in human gastric epithelium. J. Biol. Chem. 277: Waldi, D Sprühreagentien für die Dünnschicht-Chromatographie, p In E. Stahl (ed.), Dünnschicht-Chromatographie. Springer-Verlag, Berlin, Germany. 40. Yang, H., and S.-I. Hakomori A sphingolipid having a novel ceramide and lacto-n-fucopentose III. J. Biol. Chem. 246:

Lactotetraosylceramide, a novel glycosphingolipid receptor for Helicobacter pylori, present in human gastric epithelium

Lactotetraosylceramide, a novel glycosphingolipid receptor for Helicobacter pylori, present in human gastric epithelium Lactotetraosylceramide, a novel glycosphingolipid receptor for Helicobacter pylori, present in human gastric epithelium Teneberg, Susann; Leonardsson, Iréne; Karlsson, Hasse; Jovall, Per-Åke; Ångström,

More information

Cancer glycomics: identification of tumor-associated GlcNAc antigens

Cancer glycomics: identification of tumor-associated GlcNAc antigens Supplementary Data 1 / 20 Cancer glycomics: identification of tumor-associated GlcNAc antigens SUPPLEMENTARY DATA Contents: 1. Structural analysis of cancer-associated glycosphingolipids.... 1 Methods...

More information

Helicobacter pylori binding non-acid glycosphingolipids in the human stomach

Helicobacter pylori binding non-acid glycosphingolipids in the human stomach JBC Papers in Press. Published on September 19, 2018 as Manuscript RA118.004854 The latest version is at http://www.jbc.org/cgi/doi/10.1074/jbc.ra118.004854 Helicobacter pylori binding non-acid glycosphingolipids

More information

Distribution of molecular species of sphingomyelins in different parts of bovine digestive tract

Distribution of molecular species of sphingomyelins in different parts of bovine digestive tract Distribution of molecular species of sphingomyelins in different parts of bovine digestive tract M. E. Breimer Membrane Biochemistry Group, Department of Medical Biochemistry, University of Giiteborg,

More information

Lactotetraosylceramide, a Novel Glycosphingolipid Receptor for Helicobacter pylori, Present in Human Gastric Epithelium *

Lactotetraosylceramide, a Novel Glycosphingolipid Receptor for Helicobacter pylori, Present in Human Gastric Epithelium * JBC Papers in Press. Published on March 25, 2002 as Manuscript M201113200 Lactotetraosylceramide, a Novel Glycosphingolipid Receptor for Helicobacter pylori, Present in Human Gastric Epithelium * Susann

More information

The lactosylceramide binding specificity of Helicobacter pylori

The lactosylceramide binding specificity of Helicobacter pylori Glycobiology vol. 8 no. 4 pp. 297 309, 1998 The lactosylceramide binding specificity of Helicobacter pylori Jonas Ångström 4, Susann Teneberg, Maan Abul Milh, Thomas Larsson, Iréne Leonardsson, Britt-Marie

More information

Chemical characterization of neutral glycolipids in the human myeloid leukemias1

Chemical characterization of neutral glycolipids in the human myeloid leukemias1 Chemical characterization of neutral glycolipids in the human myeloid leukemias1 John C. Klock, Jay L. D Angona, and Bruce A. Macher Cancer Research Institute and the Department of Medicine,* and Department

More information

Hiroya Hidaka *1), Masaki Takiwaki 2), Mine Yamashita 2), Shinya Otsuki 1), Kenji Kawasaki 3), Mitsutoshi Sugano 3) and Takayuki Honda 4)

Hiroya Hidaka *1), Masaki Takiwaki 2), Mine Yamashita 2), Shinya Otsuki 1), Kenji Kawasaki 3), Mitsutoshi Sugano 3) and Takayuki Honda 4) Mild acid hydrolysis of sphingolipids yields lysosphingolipids: a matrix-assisted laser desorption and ionization time-of-flight mass spectrometry study Hiroya Hidaka *1), Masaki Takiwaki 2), Mine Yamashita

More information

Erythrocyte and Porcine Intestinal Glycosphingolipids Recognized by F4 Fimbriae of Enterotoxigenic Escherichia coli

Erythrocyte and Porcine Intestinal Glycosphingolipids Recognized by F4 Fimbriae of Enterotoxigenic Escherichia coli Erythrocyte and Porcine Intestinal Glycosphingolipids Recognized by F4 Fimbriae of Enterotoxigenic Escherichia coli Annelies Coddens 1, Erik Valis 2, John Benktander 2, Jonas Ångström 2, Michael E. Breimer

More information

GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum

GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum Supplemental information for: GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum I-Chiao Lee, Iris I. van Swam, Satoru Tomita, Pierre Morsomme, Thomas Rolain, Pascal

More information

LudgerPure TM APTS Labelled IgG Glycan Library

LudgerPure TM APTS Labelled IgG Glycan Library Certificate of Analysis LudgerPure TM APTS Labelled IgG Glycan Library Cat. #: CAPTS-IgG-0 Batch #. B-0 Size: approx. 0 pmol Description and: Source A mixture of APTS labelled fucosylated bi-antennary

More information

UMEÅ UNIVERSITY ODONTOLOGICAL DISSERTATIONS No. 82 ISBN ISSN Edited by the Dean of the Faculty of Medicine and Odontology

UMEÅ UNIVERSITY ODONTOLOGICAL DISSERTATIONS No. 82 ISBN ISSN Edited by the Dean of the Faculty of Medicine and Odontology UMEÅ UNIVERSITY ODONTOLOGICAL DISSERTATIONS No. 82 ISBN 91-7305-537-9 ISSN 0345-7532 Edited by the Dean of the Faculty of Medicine and Odontology Helicobacter pylori - Bacterial Adherence and Host Response

More information

Pharmazeutische Biologie und Phytochemie. Glycoconjugates from plants as antiadhesive Compounds against Helicobacter pylori

Pharmazeutische Biologie und Phytochemie. Glycoconjugates from plants as antiadhesive Compounds against Helicobacter pylori WESTFÄLISCHE WILHELMS-UNIVERSITÄT MÜNSTER Pharmazeutische Biologie und Phytochemie Glycoconjugates from plants as antiadhesive Compounds against Helicobacter pylori Ribes nigrum L. Abelmoschus esculentus

More information

Overview on the identification of different classes of. lipids by HPTLC (High Performance Thin Layer. Chromatography) and ITLC (Immuno Thin Layer

Overview on the identification of different classes of. lipids by HPTLC (High Performance Thin Layer. Chromatography) and ITLC (Immuno Thin Layer Overview on the identification of different classes of lipids by HPTLC (High Performance Thin Layer Chromatography) and ITLC (Immuno Thin Layer Chromatography) Iuliana Popa 1, Marie-Jeanne David 2, Daniel

More information

TECHNICAL BULLETIN. R 2 GlcNAcβ1 4GlcNAcβ1 Asn

TECHNICAL BULLETIN. R 2 GlcNAcβ1 4GlcNAcβ1 Asn GlycoProfile II Enzymatic In-Solution N-Deglycosylation Kit Product Code PP0201 Storage Temperature 2 8 C TECHNICAL BULLETIN Product Description Glycosylation is one of the most common posttranslational

More information

Characterization of GM, ganglioside by direct inlet chemical ionization mass spectrometry

Characterization of GM, ganglioside by direct inlet chemical ionization mass spectrometry Characterization of GM, ganglioside by direct inlet chemical ionization mass spectrometry Toshio Ariga, Robert K. Yu, Mhoru S d, Susumu Ando, and Tadashi Miyatake Department of Biochemistry and Metabolism,

More information

Isomeric Separation of Permethylated Glycans by Porous Graphitic Carbon (PGC)-LC-MS/MS at High- Temperatures

Isomeric Separation of Permethylated Glycans by Porous Graphitic Carbon (PGC)-LC-MS/MS at High- Temperatures Supplementary Information Isomeric Separation of Permethylated Glycans by Porous Graphitic Carbon (PGC)-LC-MS/MS at High- Temperatures Shiyue Zhou 1, Yifan Huang 1, Xue Dong 1, Wenjing Peng 1, Lucas Veillon

More information

The addition of sugar moiety determines the blood group

The addition of sugar moiety determines the blood group The addition of sugar moiety determines the blood group Sugars attached to glycoproteins and glycolipids on the surfaces of red blood cells determine the blood group termed A, B, and O. The A and B antigens

More information

Heparin Sodium ヘパリンナトリウム

Heparin Sodium ヘパリンナトリウム Heparin Sodium ヘパリンナトリウム Add the following next to Description: Identification Dissolve 1 mg each of Heparin Sodium and Heparin Sodium Reference Standard for physicochemical test in 1 ml of water, and

More information

189,311, , ,561, ,639, ,679, Ch13; , Carbohydrates

189,311, , ,561, ,639, ,679, Ch13; , Carbohydrates Lecture 31 (12/8/17) Reading: Ch7; 258-267 Ch10; 371-373 Problems: Ch7 (text); 26,27,28 Ch7 (study-guide: applying); 2,5 Ch7 (study-guide: facts); 6 NEXT (LAST!) Reading: Chs4,6,8,10,14,16,17,18; 128-129,

More information

Supplemental Figure S1

Supplemental Figure S1 Supplemental Figure S1 GC-MS profile of total FA of BY-2 purified PM IS: h14 IS: 17: Glycerolipids 16: GIPCs 18:1,2,3 18: h22 h24 Sterols GluCER h16: 2: h2 22: h21 c23 24: h23 h25 h26 Supplemental Figure

More information

THE JOURNAL OF ANTIBIOTICS. Polyketomycin, a New Antibiotic from Streptomyces sp. MK277-AF1. II. Structure Determination

THE JOURNAL OF ANTIBIOTICS. Polyketomycin, a New Antibiotic from Streptomyces sp. MK277-AF1. II. Structure Determination THE JOURNAL OF ANTIBIOTICS Polyketomycin, a New Antibiotic from Streptomyces sp. MK277-AF1 II. Structure Determination ISAO MOMOSE, WEI CHEN, HIKARU NAKAMURA, HIROSHI NAGANAWA, HIRONOBU IINUMA and TOMIO

More information

which indicated linear extension along both branches. Observed at higher masses were fully branched structures obtained by stepwise extension with

which indicated linear extension along both branches. Observed at higher masses were fully branched structures obtained by stepwise extension with Glycobiology vol. 10 no. 12 pp. 1291 1309, 2000 Polyglycosylceramides recognized by Helicobacter pylori: analysis by matrix-assisted laser desorption/ionization mass spectrometry after degradation with

More information

Novel D-erythro N-Octanoyl Sphingosine Analogs As Chemo- and Endocrine. Resistant Breast Cancer Therapeutics

Novel D-erythro N-Octanoyl Sphingosine Analogs As Chemo- and Endocrine. Resistant Breast Cancer Therapeutics Page 11 of 32 Cancer Chemotherapy and Pharmacology Novel D-erythro N-Octanoyl Sphingosine Analogs As Chemo- and Endocrine Resistant Breast Cancer Therapeutics James W. Antoon, Jiawang Liu, Adharsh P. Ponnapakkam,

More information

Applying a Novel Glycan Tagging Reagent, RapiFluor-MS, and an Integrated UPLC-FLR/QTof MS System for Low Abundant N-Glycan Analysis

Applying a Novel Glycan Tagging Reagent, RapiFluor-MS, and an Integrated UPLC-FLR/QTof MS System for Low Abundant N-Glycan Analysis Applying a Novel Glycan Tagging Reagent, RapiFluor-MS, and an Integrated UPLC-FLR/QTof MS System for Low Abundant N-Glycan Analysis Ying Qing Yu Waters Corporation, Milford, MA, USA APPLICATION BENEFITS

More information

Gas Chromatography/ Mass Spectrometry

Gas Chromatography/ Mass Spectrometry Gas Chromatography/ Mass Spectrometry Edited by H.F. Linskens and J.F. Jackson Contributors R.S. Bandurski G. Combaut A.Ehmann P.Hedden B.Janistyn H.Kameoka H.Kodama D.V.Lynch J.K.MacLeod H.Nyberg L.M.S.Palni

More information

Analytical Method for 2, 4, 5-T (Targeted to Agricultural, Animal and Fishery Products)

Analytical Method for 2, 4, 5-T (Targeted to Agricultural, Animal and Fishery Products) Analytical Method for 2, 4, 5-T (Targeted to Agricultural, Animal and Fishery Products) The target compound to be determined is 2, 4, 5-T. 1. Instrument Liquid Chromatograph-tandem mass spectrometer (LC-MS/MS)

More information

New immunomodulators with antitumoral properties; Isolation of active naturally-occurring anti-mitotic components of MR>1KD from pollen extract T60

New immunomodulators with antitumoral properties; Isolation of active naturally-occurring anti-mitotic components of MR>1KD from pollen extract T60 I M M U N O M O D U L A T O R S U P P O R T : GRAMINEX Flower Pollen Extract New immunomodulators with antitumoral properties; Isolation of active naturally-occurring anti-mitotic components of MR>1KD

More information

High-Performance Liquid Chromatography-Mass Spectrometry of Glycosphingolipids: II. Application to Neutral Glycolipids and Monosialogangliosides 1

High-Performance Liquid Chromatography-Mass Spectrometry of Glycosphingolipids: II. Application to Neutral Glycolipids and Monosialogangliosides 1 J. Biochem. 108, 92-98 (1990) High-Performance Liquid Chromatography-Mass Spectrometry of Glycosphingolipids: II. Application to Neutral Glycolipids and Monosialogangliosides 1 Minoru Suzuki, Tamio Yamakawa,

More information

Detailed Characterization of Antibody Glycan Structure using the N-Glycan Sequencing Kit

Detailed Characterization of Antibody Glycan Structure using the N-Glycan Sequencing Kit be INSPIRED drive DISCOVERY stay GENUINE APPLICATION NOTE Detailed Characterization of Antibody Glycan Structure using the N-Glycan Sequencing Kit Beth McLeod, New England Biolabs, Inc. Materials Remicade

More information

Supplementary Material (ESI) for Chemical Communications This journal is (c) The Royal Society of Chemistry 2008

Supplementary Material (ESI) for Chemical Communications This journal is (c) The Royal Society of Chemistry 2008 Experimental Details Unless otherwise noted, all chemicals were purchased from Sigma-Aldrich Chemical Company and were used as received. 2-DOS and neamine were kindly provided by Dr. F. Huang. Paromamine

More information

BLOOD GROUP PRODUCTS

BLOOD GROUP PRODUCTS BLOOD GROUP PRODUCTS The discovery of the ABO blood typing system by Karl Landsteiner over 100 years ago and the subsequent elucidation of their carbohydrate structures by Walter Morgan were exceedingly

More information

A Comparison of Ganglioside Content and Distribution. Tumor Tissue

A Comparison of Ganglioside Content and Distribution. Tumor Tissue A Comparison of Ganglioside Content and Distribution in Normal Murine Neural Tissue and Murine Neural Tumor Tissue Sourav Sengupta under the direction of Dr. Thomas N. Seyfried and Ms. Dia Banerjee Department

More information

Oligosaccharide Profiling of O-linked Oligosaccharides Labeled with 2 Aminobenzoic Acid (2-AA)

Oligosaccharide Profiling of O-linked Oligosaccharides Labeled with 2 Aminobenzoic Acid (2-AA) Oligosaccharide Profiling of O-linked Oligosaccharides Labeled with 2 Aminobenzoic Acid (2-AA) Elisabeth A. Kast and Elizabeth A. Higgins GlycoSolutions Corporation, Worcester, MA Data originally presented

More information

Choosing the metabolomics platform

Choosing the metabolomics platform Choosing the metabolomics platform Stephen Barnes, PhD Department of Pharmacology & Toxicology University of Alabama at Birmingham sbarnes@uab.edu Challenges Unlike DNA, RNA and proteins, the metabolome

More information

Lipid Analysis ISOLATION, SEPARATION, IDENTIFICATION AND. Bridgwater, England LIPIDOMIC ANALYSIS. Fourth Edition. Invergowrie, Dundee, Scotland

Lipid Analysis ISOLATION, SEPARATION, IDENTIFICATION AND. Bridgwater, England LIPIDOMIC ANALYSIS. Fourth Edition. Invergowrie, Dundee, Scotland Lipid Analysis ISOLATION, SEPARATION, IDENTIFICATION AND LIPIDOMIC ANALYSIS Fourth Edition WILLIAM W.CHRISTIE MRS Lipid Analysis Unit, Scottish Crop Research Institute, Dundee, Scotland Invergowrie, and

More information

Certificate of Analysis

Certificate of Analysis Certificate of Analysis Human IgG Glycoprotein Standard Cat. #: GCP-IGG-50U Batch: B13T-06 Nominal size: 50μg Expiry: Dec 2020 Description: A glycoprotein standard for use during glycan release and labeling.

More information

Sialic Acid Fluorescence Labeling Kit

Sialic Acid Fluorescence Labeling Kit Cat. # 4400 For Research Use Sialic Acid Fluorescence Labeling Kit Product Manual Table of content I. Description... 3 II. Components... 3 III. Storage... 3 VI. Procedure... 4 V. Experiment Example...

More information

GlycanPac AXR-1 Columns

GlycanPac AXR-1 Columns CHRMATGRAPHY GlycanPac AXR- Columns For High Resolution Glycan Analysis Product Specifications The Thermo Scientific GlycanPac AXR- columns are highperformance, silica-based HPLC columns for simultaneous

More information

2,6,9-Triazabicyclo[3.3.1]nonanes as overlooked. amino-modification products by acrolein

2,6,9-Triazabicyclo[3.3.1]nonanes as overlooked. amino-modification products by acrolein Supplementary Information 2,6,9-Triazabicyclo[3.3.1]nonanes as overlooked amino-modification products by acrolein Ayumi Tsutsui and Katsunori Tanaka* Biofunctional Synthetic Chemistry Laboratory, RIKEN

More information

N-Glycosidase F Deglycosylation Kit

N-Glycosidase F Deglycosylation Kit For life science research only. Not for use in diagnostic procedures. FOR IN VITRO USE ONLY. N-Glycosidase F Deglycosylation Kit Kit for the deglycosylation of asparagine-linked glycan chains on glycoproteins.

More information

Supporting Information

Supporting Information Notes Bull. Korean Chem. Soc. 2013, Vol. 34, No. 1 1 http://dx.doi.org/10.5012/bkcs.2013.34.1.xxx Supporting Information Chemical Constituents of Ficus drupacea Leaves and their α-glucosidase Inhibitory

More information

Characterization of Disulfide Linkages in Proteins by 193 nm Ultraviolet Photodissociation (UVPD) Mass Spectrometry. Supporting Information

Characterization of Disulfide Linkages in Proteins by 193 nm Ultraviolet Photodissociation (UVPD) Mass Spectrometry. Supporting Information Characterization of Disulfide Linkages in Proteins by 193 nm Ultraviolet Photodissociation (UVPD) Mass Spectrometry M. Montana Quick, Christopher M. Crittenden, Jake A. Rosenberg, and Jennifer S. Brodbelt

More information

Chapter 1 Membrane Structure and Function

Chapter 1 Membrane Structure and Function Chapter 1 Membrane Structure and Function Architecture of Membranes Subcellular fractionation techniques can partially separate and purify several important biological membranes, including the plasma and

More information

Thiol-Activated gem-dithiols: A New Class of Controllable. Hydrogen Sulfide (H 2 S) Donors

Thiol-Activated gem-dithiols: A New Class of Controllable. Hydrogen Sulfide (H 2 S) Donors Thiol-Activated gem-dithiols: A New Class of Controllable Hydrogen Sulfide (H 2 S) Donors Yu Zhao, Jianming Kang, Chung-Min Park, Powell E. Bagdon, Bo Peng, and Ming Xian * Department of Chemistry, Washington

More information

Separation and analysis of free ceramides containing 2-hydroxy fatty acids in Sphingobacterium species

Separation and analysis of free ceramides containing 2-hydroxy fatty acids in Sphingobacterium species FEMS Microbiology Letters 20 (1983) 449-453 449 Published by Elsevier Separation and analysis of free ceramides containing 2-hydroxy fatty acids in Sphingobacterium species (Bacterial sphingolipid; ceramide;

More information

Table of content. I. Description...2. II. Kit Components...2. III.Storage...2. VI.Procedure...3. V. Experiment Example...3

Table of content. I. Description...2. II. Kit Components...2. III.Storage...2. VI.Procedure...3. V. Experiment Example...3 Table of content I. Description...2 II. Kit Components...2 III.Storage...2 VI.Procedure...3 V. Experiment Example...3 VI. Application Example...11 VII. Related Products...14 VIII. References...14 1 I.

More information

LC/MS Method for Comprehensive Analysis of Plasma Lipids

LC/MS Method for Comprehensive Analysis of Plasma Lipids Application Note omics LC/MS Method for Comprehensive Analysis of Plasma s Authors Tomas Cajka and Oliver Fiehn West Coast Metabolomics Center, University of California Davis, 451 Health Sciences Drive,

More information

Masatoshi Shibuya,Takahisa Sato, Masaki Tomizawa, and Yoshiharu Iwabuchi* Department of Organic Chemistry, Graduate School of Pharmaceutical Sciences,

Masatoshi Shibuya,Takahisa Sato, Masaki Tomizawa, and Yoshiharu Iwabuchi* Department of Organic Chemistry, Graduate School of Pharmaceutical Sciences, Oxoammonium ion/naclo 2 : An Expedient, Catalytic System for One-pot Oxidation of Primary Alcohols to Carboxylic Acid with Broad Substrate Applicability Masatoshi Shibuya,Takahisa Sato, Masaki Tomizawa,

More information

HEPARIN SODIUM. Heparinum natricum

HEPARIN SODIUM. Heparinum natricum Pharmeuropa 25.1 1 Reference: PA/PH/Exp. 6/T (12) 37 ANP NOTE ON THE MONOGRAPH Definition. It is proposed to restrict the scope to heparin material of porcine origin since some of the latest requirements

More information

Thermal shift binding experiments were carried out using Thermofluor 384 ELS system. Protein

Thermal shift binding experiments were carried out using Thermofluor 384 ELS system. Protein Supplementary Methods Thermal shift assays Thermal shift binding experiments were carried out using Thermofluor 384 ELS system. Protein unfolding was examined by monitoring the fluorescence of ANS (1-anilinonaphthalene-8-

More information

Test Bank for Lehninger Principles of Biochemistry 5th Edition by Nelson

Test Bank for Lehninger Principles of Biochemistry 5th Edition by Nelson Test Bank for Lehninger Principles of Biochemistry 5th Edition by Nelson Link download full: http://testbankair.com/download/test-bank-forlehninger-principles-of-biochemistry-5th-edition-by-nelson/ Chapter

More information

Supporting information

Supporting information Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2014 Supporting information Glycan Reductive Isotope-coded Amino Acid Labeling (GRIAL) for Mass Spectrometry-based

More information

I. Structure and Properties of Lipids

I. Structure and Properties of Lipids I. Structure and Properties of Lipids Lipids: A diverse group of compounds characterized by their low solubility in water and a high solubility in organic solvents such as chloroform and methanol. Nonpolar

More information

Supporting information

Supporting information Supporting information Figure legends Supplementary Table 1. Specific product ions obtained from fragmentation of lithium adducts in the positive ion mode comparing the different positional isomers of

More information

Tivadar Orban, Beata Jastrzebska, Sayan Gupta, Benlian Wang, Masaru Miyagi, Mark R. Chance, and Krzysztof Palczewski

Tivadar Orban, Beata Jastrzebska, Sayan Gupta, Benlian Wang, Masaru Miyagi, Mark R. Chance, and Krzysztof Palczewski Structure, Volume Supplemental Information Conformational Dynamics of Activation for the Pentameric Complex of Dimeric G Protein-Coupled Receptor and Heterotrimeric G Protein Tivadar Orban, Beata Jastrzebska,

More information

Fatty Acid Methylation Kits

Fatty Acid Methylation Kits Methyl esterification kit for fatty acids analysis Fatty Acid Methylation Kits Below are two methods for efficiently preparing fatty acid samples for GC analysis. Neither method requires high temperatures,

More information

A pillar[2]arene[3]hydroquinone which can self-assemble to a molecular zipper in the solid state

A pillar[2]arene[3]hydroquinone which can self-assemble to a molecular zipper in the solid state A pillar[2]arene[3]hydroquinone which can self-assemble to a molecular zipper in the solid state Mingguang Pan, Min Xue* Department of Chemistry, Zhejiang University, Hangzhou 310027, P. R. China Fax:

More information

Group A Streptococci Bind to Mucin and Human Pharyngeal Cells through Sialic Acid-Containing Receptors

Group A Streptococci Bind to Mucin and Human Pharyngeal Cells through Sialic Acid-Containing Receptors INFECTION AND IMMUNITY, Dec. 2001, p. 7402 7412 Vol. 69, No. 12 0019-9567/01/$04.00 0 DOI: 10.1128/IAI.69.12.7402 7412.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved. Group

More information

Significance and Functions of Carbohydrates. Bacterial Cell Walls

Significance and Functions of Carbohydrates. Bacterial Cell Walls Biochemistry 462a - Carbohydrate Function Reading - Chapter 9 Practice problems - Chapter 9: 2, 4a, 4b, 6, 9, 10, 13, 14, 15, 16a, 17; Carbohydrate extra problems Significance and Functions of Carbohydrates

More information

Supporting Information for. Use of the Curtius Rearrangement of Acryloyl Azides in the Synthesis of. 3,5-Disubstituted Pyridines: Mechanistic Studies

Supporting Information for. Use of the Curtius Rearrangement of Acryloyl Azides in the Synthesis of. 3,5-Disubstituted Pyridines: Mechanistic Studies Supporting Information for Use of the Curtius Rearrangement of Acryloyl Azides in the Synthesis of 3,5-Disubstituted Pyridines: Mechanistic Studies Ta-Hsien Chuang* a, Yu-Chi Chen b and Someshwar Pola

More information

Automated Sample Preparation for Profiling Fatty Acids in Blood and Plasma using the Agilent 7693 ALS

Automated Sample Preparation for Profiling Fatty Acids in Blood and Plasma using the Agilent 7693 ALS Automated Sample Preparation for Profiling Fatty Acids in Blood and Plasma using the Agilent 7693 ALS Application Note Clinical Research Authors Frank David and Bart Tienpont, Research Institute for Chromatography,

More information

The use of mass spectrometry in lipidomics. Outlines

The use of mass spectrometry in lipidomics. Outlines The use of mass spectrometry in lipidomics Jeevan Prasain jprasain@uab.edu 6-2612 utlines Brief introduction to lipidomics Analytical methodology: MS/MS structure elucidation of phospholipids Phospholipid

More information

A new solvent system for the separation of neutral glycosphingolipids

A new solvent system for the separation of neutral glycosphingolipids A new solvent system for the separation of neutral glycosphingolipids K. Watanabe and Y. Arao Shigei Medical Research nstitute, Division of Biochemistry, 2 1 17 Yamada, Okayama, 71-2, Japan Summary A solvent

More information

A new solvent system for the separation of neutral glycosphingolipids

A new solvent system for the separation of neutral glycosphingolipids A new solvent system for the separation of neutral glycosphingolipids K. Watanabe and Y. Arao Shigei Medical Research Institute, Division of Biochemistry, 2 1 17 Yamada, Okayama, 701-02, Japan Summary

More information

Structural Elucidation of N-glycans Originating From Ovarian Cancer Cells Using High-Vacuum MALDI Mass Spectrometry

Structural Elucidation of N-glycans Originating From Ovarian Cancer Cells Using High-Vacuum MALDI Mass Spectrometry PO-CON1347E Structural Elucidation of N-glycans Originating From Ovarian Cancer Cells Using High-Vacuum MALDI Mass Spectrometry ASMS 2013 TP-708 Matthew S. F. Choo 1,3 ; Roberto Castangia 2 ; Matthew E.

More information

A Novel Ganglioside Isolated from Renal Cell Carcinoma*

A Novel Ganglioside Isolated from Renal Cell Carcinoma* THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 276, No. 20, Issue of May 18, pp. 16695 16703, 2001 2001 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. A Novel Ganglioside

More information

Key Words: Brassica oleraceae, glucosinolate, liquid chromatography mass spectrometry, FNH-I-003

Key Words: Brassica oleraceae, glucosinolate, liquid chromatography mass spectrometry, FNH-I-003 IDENTIFICATION OF MAJOR GLUCOSINOLATES IN BROCCOLI (Brassica oleracea var. italica) BY LIQUID CHROMATOGRAPHY MASS SPECTROMETRY (LC-MS) AND DETERMINATION OF ANTICANCER PROPERTIES OF BROCCOLI EXTRACTS Carlos

More information

LIFE CarbOnFarm Progress report Annex 7.1 Deliverables

LIFE CarbOnFarm Progress report Annex 7.1 Deliverables Report for C. 2 Action: first year The data are related to the field soil samples from project sites of Piemonte (Tetto Frati and Grugliasco) and Campania, (Castel Volturno and Prima Luce) after the application

More information

Electronic Supplementary Information

Electronic Supplementary Information Electronic Supplementary Information Microwave-assisted Kochetkov amination followed by permanent charge derivatization: A facile strategy for glycomics Xin Liu a,b, Guisen Zhang* a, Kenneth Chan b and

More information

Efficient and green, microwave assisted synthesis of haloalkylphosphonates via Michaelis-Arbuzov reaction

Efficient and green, microwave assisted synthesis of haloalkylphosphonates via Michaelis-Arbuzov reaction ELECTRONIC SUPPORTING INFORMATION Efficient and green, microwave assisted synthesis of haloalkylphosphonates via Michaelis-Arbuzov reaction Petr Jansa, Antonín Holý, Martin Dračinský, Ondřej Baszczyňski,

More information

What sort of Science is Glycoscience? (Introductory lecture)

What sort of Science is Glycoscience? (Introductory lecture) Glycosciences: Glycobiology & Glycochemistry e-learning course What sort of Science is Glycoscience? (Introductory lecture) Paula Videira Faculdade de Ciências Médicas Nova University, Lisbon Portugal

More information

Supporting Information for:

Supporting Information for: Supporting Information for: Methylerythritol Cyclodiphosphate (MEcPP) in Deoxyxylulose Phosphate Pathway: Synthesis from an Epoxide and Mechanisms Youli Xiao, a Rodney L. Nyland II, b Caren L. Freel Meyers

More information

Glycosyl composition of polysaccharide from Tinospora cordifolia. II. Glycosyl linkages

Glycosyl composition of polysaccharide from Tinospora cordifolia. II. Glycosyl linkages Acta Pharm. 54 (2004) 73 78 Short communication Glycosyl composition of polysaccharide from Tinospora cordifolia. II. Glycosyl linkages MUSLIARAKATBACKER JAFAR 1* P. AZADI 2 1 Department of Chemistry,

More information

N-Glycan Sequencing Kit

N-Glycan Sequencing Kit PROTEIN TOOLS N-Glycan Sequencing Kit Instruction Manual NEB #E577S 2 reactions Version 1. 1/18 be INSPIRED drive DISCOVERY stay GENUINE This product is intended for research purposes only. This product

More information

Organic Chemistry Laboratory Fall Lecture 3 Gas Chromatography and Mass Spectrometry June

Organic Chemistry Laboratory Fall Lecture 3 Gas Chromatography and Mass Spectrometry June 344 Organic Chemistry Laboratory Fall 2013 Lecture 3 Gas Chromatography and Mass Spectrometry June 19 2013 Chromatography Chromatography separation of a mixture into individual components Paper, Column,

More information

BIOCHEMISTRY & MEDICINE:

BIOCHEMISTRY & MEDICINE: BIOCHEMISTRY & MEDICINE: INTRODUCTION Biochemistry can be defined as the science of the chemical basis of life (Gk bios "life"). The cell is the structural unit of living systems. Thus, biochemistry can

More information

Self-organization of dipyridylcalix[4]pyrrole into a supramolecular cage for dicarboxylates

Self-organization of dipyridylcalix[4]pyrrole into a supramolecular cage for dicarboxylates Electronic Supplementary Material (ESI) for RSC Advances. This journal is The Royal Society of Chemistry 2016 Electronic Supplementary Information Self-organization of dipyridylcalix[4]pyrrole into a supramolecular

More information

Preparation of Fluorinated Tetrahydropyrans and Piperidines using a New Nucleophilic Fluorination Reagent DMPU/HF

Preparation of Fluorinated Tetrahydropyrans and Piperidines using a New Nucleophilic Fluorination Reagent DMPU/HF Supporting information Preparation of Fluorinated Tetrahydropyrans and Piperidines using a New Nucleophilic Fluorination Reagent DMPU/HF Otome E. Okoromoba, a Gerald B. Hammond, a, * Bo Xu b, * a Department

More information

Relative Quantitation of Human Polymorphonuclear Leukocyte Cell Membrane GPEtn Lipids

Relative Quantitation of Human Polymorphonuclear Leukocyte Cell Membrane GPEtn Lipids Relative Quantitation of Human Polymorphonuclear Leukocyte Cell Membrane GPEtn Lipids Using the QTRAP System with mtraq Reagents Karin A. Zemski-Berry 1, John M. Hevko 2, and Robert C. Murphy 1 1 Department

More information

Eszopiclone (Lunesta ): An Analytical Profile

Eszopiclone (Lunesta ): An Analytical Profile Eszopiclone (Lunesta ): An Analytical Profile Roxanne E. Franckowski, M.S.* and Robert A. Thompson, Ph.D. U.S. Department of Justice Drug Enforcement Administration Special Testing and Research Laboratory

More information

Organic Chemistry Diversity of Carbon Compounds

Organic Chemistry Diversity of Carbon Compounds Organic Chemistry Diversity of Carbon Compounds Hydrocarbons The Alkanes The Alkenes The Alkynes Naming Hydrocarbons Cyclic Hydrocarbons Alkyl Groups Aromatic Hydrocarbons Naming Complex Hydrocarbons Chemical

More information

Separation of brain monosialoganglioside molecular species by high-performance liquid chromatography

Separation of brain monosialoganglioside molecular species by high-performance liquid chromatography methodology Separation of brain monosialoganglioside molecular species by high-performance liquid chromatography Hiroko Kadowaki,' James E. Evans, and Robert H. McCluer Department of Biochemistry, Eunice

More information

Prerequisites Protein purification techniques and protein analytical methods. Basic enzyme kinetics.

Prerequisites Protein purification techniques and protein analytical methods. Basic enzyme kinetics. Case 19 Purification of Rat Kidney Sphingosine Kinase Focus concept The purification and kinetic analysis of an enzyme that produces a product important in cell survival is the focus of this study. Prerequisites

More information

Supporting Information for. Boronic Acid Functionalized Aza-Bodipy (azabdpba) based Fluorescence Optodes for the. analysis of Glucose in Whole Blood

Supporting Information for. Boronic Acid Functionalized Aza-Bodipy (azabdpba) based Fluorescence Optodes for the. analysis of Glucose in Whole Blood Supporting Information for Boronic Acid Functionalized Aza-Bodipy (azabdpba) based Fluorescence Optodes for the analysis of Glucose in Whole Blood Yueling Liu, Jingwei Zhu, Yanmei Xu, Yu Qin*, Dechen Jiang*

More information

Supporting Information

Supporting Information Supporting Information Unconventional Passerini Reaction towards α-aminoxyamides Ajay L. Chandgude, Alexander Dömling* Department of Drug Design, University of Groningen, Antonius Deusinglaan 1, 9713 AV

More information

Europium Labeling Kit

Europium Labeling Kit Europium Labeling Kit Catalog Number KA2096 100ug *1 Version: 03 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Intended Use... 3 Background... 3 Principle of the Assay...

More information

DELFIA Tb-N1 DTA Chelate & Terbium Standard

DELFIA Tb-N1 DTA Chelate & Terbium Standard AD0029P-1 (en) 1 DELFIA Tb-N1 DTA Chelate & AD0012 Terbium Standard For Research Use Only INTRODUCTION DELFIA Tb-N1 DTA Chelate is optimized for the terbium labeling of proteins and peptides for use in

More information

CHAPTER-6 IDENTIFICATION, AND CHARACTERISATION OF DEGRADATION IMPURITY IN VALSARTAN TABLETS

CHAPTER-6 IDENTIFICATION, AND CHARACTERISATION OF DEGRADATION IMPURITY IN VALSARTAN TABLETS 129 CHAPTER-6 IDENTIFICATION, AND CHARACTERISATION OF DEGRADATION IMPURITY IN VALSARTAN TABLETS 130 6.1. Introduction Valsartan is an orally active specific angiotensin II blocker effective in lowering

More information

TECHNICAL BULLETIN. Sialic Acid Quantitation Kit. Catalog Number SIALICQ Storage Temperature 2 8 C

TECHNICAL BULLETIN. Sialic Acid Quantitation Kit. Catalog Number SIALICQ Storage Temperature 2 8 C Sialic Acid Quantitation Kit Catalog Number SIALICQ Storage Temperature 2 8 C TECHNICAL BULLETIN Product Description The Sialic Acid Quantitation Kit provides a rapid and accurate determination of total

More information

Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit

Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit PROTOCOL Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit DESCRIPTION Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit Sufficient materials

More information

Product Guide for LudgerSep TM ur2 UHPLC Column for DMB Sialic Acid Analysis

Product Guide for LudgerSep TM ur2 UHPLC Column for DMB Sialic Acid Analysis Product Guide for LudgerSep TM ur2 UHPLC Column for DMB Sialic Acid Analysis Product # LS-UR2-2.1x100 Ludger Document # LS-uR2-DMB-Guide-v2.1 Ludger Ltd Culham Science Centre Oxford OX14 3EB United Kingdom

More information

Product Guide for LudgerSep TM R1 HPLC Column for DMB labelled Sialic Acid Analysis

Product Guide for LudgerSep TM R1 HPLC Column for DMB labelled Sialic Acid Analysis Product Guide for LudgerSep TM R1 HPLC Column for DMB labelled Sialic Acid Analysis Product # LS-R1-4.6x150 Ludger Document # LS-R1-DMB-Guide-v5.1 Ludger Ltd Culham Science Centre Oxford OX14 3EB United

More information

UMR 8612, Faculty of Pharmacy Chatenay-Malabry. Natura-Brasil. EA Laboratory of Dermatological Research,

UMR 8612, Faculty of Pharmacy Chatenay-Malabry. Natura-Brasil. EA Laboratory of Dermatological Research, Iuliana Popa 1, Noëlle Remoué 2 and Jacques Portoukalian 3 1 UMR 8612, Faculty of Pharmacy Chatenay-Malabry 2 Natura-Brasil 3 EA 41 69 Laboratory of Dermatological Research, University of Lyon I, Faculty

More information

Phosphorylated glycosphingolipids essential for cholesterol mobilization in C. elegans

Phosphorylated glycosphingolipids essential for cholesterol mobilization in C. elegans SUPPLEMENTARY INFORMATION Phosphorylated glycosphingolipids essential for cholesterol mobilization in C. elegans Sebastian Boland, Ulrike Schmidt, Vyacheslav Zagoriy, Julio L. Sampaio, Raphael Fritsche,

More information

TechNotes. Gangliosides. 1. Applications

TechNotes. Gangliosides. 1. Applications TechNotes Gangliosides Gangliosides are a large group of sialylated glycosphingolipids that are widely expressed in mammalian tissues. Gangliosides are found in most tissues of the body, but they are particularly

More information

Tenofovir disoproxil fumarate (Tenofoviri disoproxili fumaras)

Tenofovir disoproxil fumarate (Tenofoviri disoproxili fumaras) C 19 H 30 N 5 O 10 P. C 4 H 4 O 4 Relative molecular mass. 635.5. Chemical names. bis(1-methylethyl) 5-{[(1R)-2-(6-amino-9H-purin-9-yl)-1-methylethoxy]methyl}-5-oxo-2,4,6,8-tetraoxa-5-λ 5 - phosphanonanedioate

More information

Neuroprotective and Antioxidant Constituents from Curcuma zedoaria Rhizomes

Neuroprotective and Antioxidant Constituents from Curcuma zedoaria Rhizomes Supporting Information Rec. Nat. Prod. 9:3 (2015) 349-355 Neuroprotective and Antioxidant Constituents from Curcuma zedoaria Rhizomes Omer Abdalla Ahmed Hamdi 1, Lo Jia Ye 2, Muhamad Noor Alfarizal Kamarudin

More information

Enantioselective synthesis of anti- and syn-β-hydroxy-α-phenyl carboxylates via boron-mediated asymmetric aldol reaction

Enantioselective synthesis of anti- and syn-β-hydroxy-α-phenyl carboxylates via boron-mediated asymmetric aldol reaction Enantioselective synthesis of anti- and syn-β-hydroxy-α-phenyl carboxylates via boron-mediated asymmetric aldol reaction P. Veeraraghavan Ramachandran* and Prem B. Chanda Department of Chemistry, Purdue

More information

Application Note. Abstract. Author. Biotherapeutics & Biosimilars. Sonja Schneider Agilent Technologies, Inc. Waldbronn, Germany

Application Note. Abstract. Author. Biotherapeutics & Biosimilars. Sonja Schneider Agilent Technologies, Inc. Waldbronn, Germany Sensitive and Reproducible Glycan Analysis of Human Immunoglobulin G The Agilent 1260 Infi nity Bio-inert Quaternary LC System with an Agilent AdvanceBio 2.7 µm Glycan Mapping Column and Fluorescence Detection

More information