Lipid Imaging Mass Spectrometry.
|
|
- Drusilla West
- 6 years ago
- Views:
Transcription
1 Lipid Imaging Mass Spectrometry. NH 2 P H H H H P H H P H N N Advanced Graduate Course in Metabolomics Janusz Kabarowski, Dept. of Microbiology, UAB. Matrix-Assisted Laser Desorption/Ionization (MALDI): Matrix molecules absorb laser light, enter an excited state, and collide with sample molecules, facilitating charge transfer to create ions. Conventional MALDI plate MALDI-TF instrument Mass Spectrometric Imaging for biomedical tissue analysis Kamila Chughtai and Ron M.A. Heeren Chem Rev. Vol.110(5): pp , 2010.
2 Cryosectioning onto Indium Tin xide (IT) coated glass slides and scanning digital image of slide for teaching FlexControl software on MALDI-TF. Vacuum sublimation is used to apply an even microscopically thin uniform layer of matrix compound onto tissue section without the need for solvents. Sublimation: the transition of a substance from solid to gas phase without an intermediate liquid phase. MALDI matrices for lipid imaging: DHB: 2,5-dihydrobenzoic acid (+ve mode) 1,5-diaminonapthalene (-ve mode)
3 How do we apply matrix for MALDI Imaging? We built a vacuum sublimation apparatus. Digital vacuum monitor Vacuum micro-valves Pirani vacuum gauge Vacuum sublimation chamber vacuum exhaust Heated sand bath Vacuum at 0.05 Torr pressure is required in sublimation chamber and is monitored by electronic Pirani vacuum gauge. 750 Torr (atmospheric pressure) 0.05 Torr
4 Matrix deposition by vacuum sublimation C Cold condensor unit of vacuum sublimation chamber 0.05 Torr IT (indium-tin-oxide coated) slide with cryosections Matrix compound 140 C Heated sand Slides with matrix applied by vacuum sublimation. Deposition of the matrix compound is at the molecular level because gaseous molecules recrystallize at the relatively cold surface of the tissue section attached to the cold condenser. The uniformity of matrix deposition onto the slide attached to the cold condenser surface reflects the random Brownian motion of the released gaseous matrix molecules.
5 Adaptated MALDI plate holds slides for MALDIimaging Mass Spectrometry. Conventional MALDI plate MALDI plate for cryosections Setting up a MALDI-IMS run after matrix sublimation. (1) The slide is placed into a Bruker slide adaptor and into the MALDI-TF instrument (2) Regions to image are selected from the scanned photo of the slide
6 MALDI-IMS in action. MALDI-IMS in action.
7 How are we applying MALDI-IMS to our research? Lipid based mechanisms of immune suppression and antiinflammatory action by HDL in Lupus. Acute kidney injury (UAB/UCSD Brien Center). Lipids as mediators of age-related changes in eye lens. Zebrafish - an emerging model in biomedical research.. $0.39/tank/day (max fish per tank) embryos weekly per sexually mature female Functional vision by 5 days of age Transparent embryos permeable to small molecules Various mutants model human ocular disorders $0.75/cage/day (max 4-5 mice per cage) 6-8 pups monthly per sexually mature female Functional vision by 2 weeks of age Stephen Watts, Ph.D., Department of Biology, Director UAB Aquatic Animal Research Core for NRC.
8 Age associated changes in the lens lipidome of Mouse and Zebrafish. 2 month-old Zebrafish 12 month-old Zebrafish 300 M 300 M AGING 1 month-old Mouse 12 month-old Mouse AGING 300 M 300 M Specific aims of the study: 1) To characterize and compare the lens lipidomes of Mice and Zebrafish. 2) To analyze the changes that occur in the lens lipdome with aging. 3) To determine where lipid changes are occurring in the lens. 8 weeks 12 months 2 weeks 12 months 6 x 12 lenses 6 x 5 lenses 6 x 3 lenses 6 x 1 lens Normalized weight Analyzed using ESI-MS/MS on Triple-TF Mass Spectrometer Stephen Barnes, Ph.D., Department of Pharmacology & Toxicology, Director UAB TMPL.
9 ESI-MS/MS on Triple-TF Mass Spectrometer. Complete and Comprehensive Data Collection TF MS Scanning Storing all Product Ions Lipidomic Profiling Map of Rat Brain Extracts Acquired in Negative Mode signal intensity Fragment mass m/z Q1 selection window amu Precursor mass m/z Mouse lens positive mode (Total lipids). 6 -log 10 p p 0.05 (-log 10 p>1.301) Log 2 FC PG -44:2 (-PG) SM 38:4;2 (SM) LPE 12:3 (LPE p ) LPC 16:0 PC 36:4 (16:0/20:4) PC -32:1 (PC) [alkyl link] PE 36:0 (-PE) SM 24:1;2 (SM) SM 32:3;4 (SM) SM 34:0;4 (SM) SM 34:1;3 (LCB 18:2, 2-2H2, LCB 18:1;3-3H2) LMMPE 18:0 (-MMPE) MM(monomethyl) PE 36:0 (-MMPE)
10 Zebrafish lens positive mode (Total lipids). 12 -log 10 p p 0.05 (-log 10 p>1.301) Log 2 FC PG -44:2 (-PG) SM 38:4;2 (SM) LPE 12:3 (LPE p ) LPC 16:0 PC 36:4 (16:0/20:4) PC -32:1 (PC) [alkyl link] PE 36:0 (-PE) SM 24:1;2 (SM) SM 32:3;4 (SM) SM 34:0;4 (SM) SM 34:1;3 (LCB 18:2, 2-2H2, LCB 18:1;3-3H2) LMMPE 18:0 (-MMPE) MM(monomethyl) PE 36:0 (-MMPE) Sphingomyelins are increased with ageing in mouse (Black) and Zebrafish (white) lens. SM 31:2;4 SM 33:2;4 SM 30:2;4 -Log 10 p Mouse Zebrafish SM 34:0;4 SM 38:4;2 SM 32:3;4 SM 34:1;3 SM 24:4;3 P NH H N 8 6 SM 34:1;3 (LCB 18:2;2-2H2, LCB 18:1;3-3H2) 4 p 0.05 (-log 10 p>1.301) Log 2 FC
11 Mouse lens Phosphatidylcholines (white) and Lysophosphatidylcholines (black). H P H H H P H p 0.05 (-log 10 p>1.301) N 36:6 PC -Log 10 p :3 LPC ND 22:3 LPC ND 30:2 PC ND -linked acyl PCs only detected in Mouse 1-alkyl, 2-acyl PC CH H 3 N CH P 3 H :1 PC N (125m/z MSMS) :1 PC :4 PC 16:0 LPC -40:2 PC 42:2 PC :3 PC 14:0 LPC 34:5 PC -32:1 PC 30:1 PC 16:0 LPC (125m/z MSMS) Log 2 FC Zebrafish lens Phosphatidylcholines (white) and Lysophosphatidylcholines (black). H P H H H P H N N 42:3 PC 42:2 PC 42:1 PC -Log 10 p No alkyl (-) PCs detected in Zebrafish 36:4 PC 30:1 PC 20:3 LPC 1-alkyl, 2-acyl PC CH H 3 N CH P 3 H 14:0 LPC 34:5 PC 36:6 PC 22:3 LPC 16:0 LPC 30:2 PC 3 p 0.05 (-log 10 p>1.301) Log 2 FC
12 ESI-MS/MS fragments from m/z 36:4 PC (+mode) phosphocholine head group H P H N Intensity log 10 p p Log 2 FC Mass/Charge, Da Precursor: Da, CE: 50.0 Spectrum from MSMSALL_Pos F2.wiff (sample 1) - Pos F-2, Experiment 2, +TF MS^2 ( ) from min 1150 ESI-MS/MS fragments from m/z 36:4 PC acetate adduct (-mode) Intensity FA 20: FA 16: H P H N Mass/Charge, Da Precursor: Da Spectrum from MSMSALL_Neg F2.wiff (sample 1) - Neg F-2, Experiment 2, -TF MS^2 ( ) from min
13 So where in the lens are these changes in 16:0/20:4 PC occuring? A 300 M B 300 M 10% gelatin/cryosection H&E Formalin/paraffin H&E Tissue processing for matrix application and eye lens MALDI-IMS is challenging Formalin fixed paraffin sections of lens (B) cannot be used for MALDI-IMS (although certain modifications of fixation protocols might allow for subsequent lipid MALDI-IMS). Cryosectioning (after tissue embedding in 10% gelatin) must therefore be optimized for the tissue being studied. In the case of lens, this is very challenging as the dense lens material has a propensity to crack (A). Positive ion mode MALDI average mass spectra of (A) 8 week old and (B) 12 month old Zebrafish eyes, showing the location of the peaks for which images were subsequently taken. A 8 week old Zebrafish H + Na + K + B 12 month old Zebrafish H + Na + K + Peaks correspond to expected protonated, sodiated, and potassiated adducts of PC(36:4).
14 MALDI-IMS on protonated, sodiated, and potassiated adducts of PC(36:4) in zebrafish eye. [PC(36:4)+H] + = [PC(36:4)+Na] + = [PC(36:4)+K] + = months old 8 weeks old MS/MS on protonated adduct of PC(36:4) in Zebrafish eye choline head group H P H N parent ion weeks old ZF m/z MS/MS on m/z shows fragmentation indicative of PC(16:0/20:4) months old ZF Mass/Charge, Da Mass/Charge 800 (m/z), Da
15 MALDI-IMS on 16:0/20:4 PC(36:4) in mouse eye. 16:0/20:4 PC LD MUSE LENS #2 ( ) 16:0/20:4 PC 1 year old MUSE LENS #2 ( )
16 Restricted diacyl phospholipids in lens core. TTAL EYE spectrum Mouse eye, LENS PERIPHERY spectrum LENS PERIPHERY spectrum LENS CRE spectrum
17 Quantitative and Spatial Analysis of Lipids Involved in Acute Kidney Injury. Specific aims of the study: 1) To characterize the kidney lipidome of mice following acute injury (quantitatively) weeks old C57Bl6/J Sham IR Normalized kidney weight Analyzed using ESI-MS/MS on 5600 Triple-TF Mass Spectrometer
18 ESI-MS/MS on Triple-TF Mass Spectrometer. MS/MS of Every Precursor Product Ion Scan of Every Lipid Lipidomic Profiling Map of Rat Brain Acquired in Negative Mode storing all product ion spectra; 1.6 min Fragment mass m/z signal intensity Precursor mass m/z Specific aims of the study: 2) To analyze WHERE the changes in lipids occur in the kidney (spatially) and to characterize those lipids that remain unchanged quantitatively but might be spatially altered weeks old C57Bl6/J Sham IR Kidney cryosections MALDI-Imaging MS on a Bruker-TF Mass Spectrometer
19 In vivo mouse model of AKI: nephrectomy SWATH 5600 TF Resuspend lipids in MetH Dried lipids under Argon Sham or IR left kidney Extract lipids (Bligh Dyer) ½ Kidney homogenization in 1ml PBS/BHT Kidney homogenization in 1ml PBS/BHT Samples under Argon -80 C 30 mins renal ligation 6 hours reperfusion Euthanization PBS/BHT perfusion ½ Kidney 10% gelatin embedding MALDI-IMS Plasma creatinine (mg/dl) SHAM control IR (0.5/6 hrs) IR (0.5/24hrs) plasma creatinine 1-2mg/dL Mouse kidney lipids changed following IR (0.5/6hrs) 3.0 (5600 Triple-TF SWATH PE -40:5 positive mode) _639.6 GT2 26:0;2 (LCB 18:0;2-H 2 0) 900.8_284.3 p 0.05 (-log 10 p>1.301) -log 10 p GD2 32:2;2 (LCB 18:2;2-H 2 0, LCB 18:1;3-3H 2 ) 900.8_ PC -38: _184.1 PE -40: _641.6 PE -42: _198.1 CE 27:3 +NH 4 (chol) 790.7_369.4 LPC 22: _184.1 SM 39:3; _ weeks old C57Bl6/J (n=6) Log 2 FC
20 Mouse kidney lipids changed following IR (0.5/6hrs) (5600 Triple-TF SWATH negative mode). PC 16:0/18: _ log 10 p PE -40: _196.0 LPI -28: _223.0 PE 46: _196.0 PE 14:0/20: _227.2 PE -14:0/20: _303.2 PE 46: _ p 0.05 (-log 10 p>1.301) Log 2 FC 8-10 weeks old C57Bl6/J (n=6) 1-alkyl, 2-acyl PE 1-acyl, 2-acyl PE H P H NH 2 H P H NH 2 PE -40:4 intensity r=0.771 p= PE -40:5 intensity r=0.724 p= Plasma creatinine (IR 0.5/6hrs) Plasma creatinine (IR 0.5/6hrs)
21 1-alkyl, 2-acyl PC 1-acyl, 2-acyl PC H P H N H P H N PC -38:1 intensity r=0.730 p= SM -39:3;2 intensity r= p= Plasma creatinine (IR 0.5/6hrs) Plasma creatinine (IR 0.5/6hrs) CE 27:3 +NH 4 (chol) intensity r=0.886 p= Plasma creatinine (IR 0.5/6hrs) GD2 32:2;2 intensity r= p= Plasma creatinine (IR 0.5/6hrs)
22 SHAM control IR (0.5/6hrs) MALDI-IMS on PE -40:4 (782.6_641.6) -log 10 p PE -40: _639.6 p 0.05 (-log 10 p>1.301) PE -40: _641.6 SHAM Log 2 FC IR
23 Acknowledgments. Stephen Barnes Landon Wilson Ray Moore UAB, Targeted Metabolomics and Proteomics Lab David Graves UAB, Chair Department of Chemistry Anupam Agarwal UAB, Dept Medicine, Brien Acute Kidney Injury Research Center Trenton Schoeb UAB, Dept Genetics, Dir. Comparative Pathology Core Laboratory Miranda Collier UAB, Honors and Chemistry Scholars Undergraduate Fellowship Program (Currently Ph.D University of xford) Alex Johnson Kelly Walters UAB, Undergraduate Chemistry (Pre-Med) Sangeetha Rao UAB Resident Steve Burgess Dir. R&D, Avantipolar Lipids
Mass Spectrometry based metabolomics
Mass Spectrometry based metabolomics Metabolomics- A realm of small molecules (
More informationThe use of mass spectrometry in lipidomics. Outlines
The use of mass spectrometry in lipidomics Jeevan Prasain jprasain@uab.edu 6-2612 utlines Brief introduction to lipidomics Analytical methodology: MS/MS structure elucidation of phospholipids Phospholipid
More informationA Definitive Lipidomics Workflow for Human Plasma Utilizing Off-line Enrichment and Class Specific Separation of Phospholipids
A Definitive Lipidomics Workflow for Human Plasma Utilizing Off-line Enrichment and Class Specific Separation of Phospholipids Jeremy Netto, 1 Stephen Wong, 1 Federico Torta, 2 Pradeep Narayanaswamy, 2
More informationMass spectrometry imaging. What does MS imaging offer?
BMG 744 Mass spectrometry imaging Stephen Barnes, PhD With sincere acknowledgments to David Stella, PhD and Kyle A. Floyd, MS, former students in the Barnes Laboratory (2005 2012) and Kevin Schey, PhD,
More informationGlycerolipid Analysis. LC/MS/MS Analytical Services
Glycerolipid Analysis LC/MS/MS Analytical Services Molecular Characterization and Quantitation of Glycerophospholipids in Commercial Lecithins by High Performance Liquid Chromatography with Mass Spectrometric
More informationMALDI Imaging Drug Imaging Detlev Suckau Head of R&D MALDI Bruker Daltonik GmbH. December 19,
MALDI Imaging Drug Imaging Detlev Suckau Head of R&D MALDI Bruker Daltonik GmbH December 19, 2014 1 The principle of MALDI imaging Spatially resolved mass spectra are recorded Each mass signal represents
More informationFuture of Metabolomics. Issues in metabolomics research
Knowledge that will change your world Ist UAB Metabolomics Workshop July 22 25, 2013 Future of Metabolomics Stephen Barnes, PhD Director, Targeted Metabolomics and Proteomics Laboratory Issues in metabolomics
More informationMALDI-IMS (MATRIX-ASSISTED LASER DESORPTION/IONIZATION
MALDI-IMS (MATRIX-ASSISTED LASER DESORPTION/IONIZATION IMAGING MASS SPECTROMETER) IN TISSUE STUDY YANXIAN CHEN MARCH 8 TH, WEDNESDAY. SEMINAR FOCUSING ON What is MALDI imaging mass spectrometer? How does
More informationMass-Spectrometric Analysis of Lipids (Lipidomics)
Mass-Spectrometric Analysis of Lipids (Lipidomics) 1. Identification 2. Quantification 3. Metabolism Why to do lipidomics? Biology: Functions of different lipids? Medicine: Diagnostics and Therapy Industry:
More informationThe study of phospholipids in single cells using an integrated microfluidic device
Supporting Information: The study of phospholipids in single cells using an integrated microfluidic device combined with matrix-assisted laser desorption/ionization mass spectrometry Weiyi Xie,, Dan Gao,
More informationData Independent MALDI Imaging HDMS E for Visualization and Identification of Lipids Directly from a Single Tissue Section
Data Independent MALDI Imaging HDMS E for Visualization and Identification of Lipids Directly from a Single Tissue Section Emmanuelle Claude, Mark Towers, and Kieran Neeson Waters Corporation, Manchester,
More informationSequence Identification And Spatial Distribution of Rat Brain Tryptic Peptides Using MALDI Mass Spectrometric Imaging
Sequence Identification And Spatial Distribution of Rat Brain Tryptic Peptides Using MALDI Mass Spectrometric Imaging AB SCIEX MALDI TOF/TOF* Systems Patrick Pribil AB SCIEX, Canada MALDI mass spectrometric
More informationObtaining Answers to Biological Questions Sample Prep to Data Analysis. Jeremiah D. Tipton, Ph.D. SCIEX Advanced Workflow Specialist in OMICS
Obtaining Answers to Biological Questions Sample Prep to Data Analysis Jeremiah D. Tipton, Ph.D. SCIEX Advanced Workflow Specialist in OMICS OMICS Research Why Quantitative OMICS? 2 2015 AB Sciex SCIEX
More informationSuppl. Table 1: CV of pooled lipoprotein fractions analysed by ESI-MS/MS
Supplement VLDL LDL HDL PC 3.3 1.77 1.3 LPC 4.82 2.5.35 SM 3.1 4.6 1.92 CER 2.17 6.3 4.15 PE 3.18 1.93 2.79 PE-pl 13.18 1.9 2.32 CE 2.9.65.4 FC.36 3.5 2.54 Suppl. Table 1: CV of pooled lipoprotein fractions
More information[application note] DIRECT TISSUE IMAGING AND CHARACTERIZATION OF PHOSPHOLIPIDS USING A MALDI SYNAPT HDMS SYSTEM
DIRECT TISSUE IMAGING AND CHARACTERIZATION OF PHOSPHOLIPIDS USING A MALDI SYNAPT HDMS SYSTEM Emmanuelle Claude, Marten Snel, Thérèse McKenna, and James Langridge INTRODUCTION The last decade has seen a
More informationEnrichment of Phospholipids from Biological Matrices with Zirconium Oxide-Modified Silica Sorbents
Enrichment of Phospholipids from Biological Matrices with Zirconium Oxide-Modified Silica Sorbents Xiaoning Lu, Jennifer E. Claus, and David S. Bell Supelco, Div. of Sigma-Aldrich Bellefonte, PA 16823
More informationBiological Mass Spectrometry. April 30, 2014
Biological Mass Spectrometry April 30, 2014 Mass Spectrometry Has become the method of choice for precise protein and nucleic acid mass determination in a very wide mass range peptide and nucleotide sequencing
More informationChoosing the metabolomics platform
Choosing the metabolomics platform Stephen Barnes, PhD Department of Pharmacology & Toxicology University of Alabama at Birmingham sbarnes@uab.edu Challenges Unlike DNA, RNA and proteins, the metabolome
More informationLipids Analysis. Lipids
Lipids Analysis Stephen Barnes 3 5 15 Lipids Lipids are mostly very hydrophobic Most are conjugates of fatty acids of a variety of chain lengths, which have different degrees of unsaturation, cis trans
More informationSupporting information for
Supporting information for Nitrogen and Sulfur Co-doped Carbon Dots-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Imaging for Profiling Bisphenol S Distribution in Mouse Tissues
More informationSmall Molecule Drug Imaging of Mouse Tissue by MALDI-TOF/TOF Mass Spectrometry and FTMS
Bruker Daltonics Application Note # MT-93/FTMS-38 Small Molecule Drug Imaging of Mouse Tissue by MALDI-TOF/TOF Mass Spectrometry and FTMS Introduction Matrix Assisted Laser Desorption Ionization (MALDI)
More informationThree Dimensional Mapping and Imaging of Neuropeptides and Lipids in Crustacean Brain
Three Dimensional Mapping and Imaging of Neuropeptides and Lipids in Crustacean Brain Using the 4800 MALDI TOF/TOF Analyzer Ruibing Chen and Lingjun Li School of Pharmacy and Department of Chemistry, University
More informationAn optical dosimeter for the selective detection of gaseous phosgene with ultra-low detection limit
Supporting information for An optical dosimeter for the selective detection of gaseous phosgene with ultra-low detection limit Alejandro P. Vargas, Francisco Gámez*, Javier Roales, Tània Lopes-Costa and
More informationSolving practical problems. Maria Kuhtinskaja
Solving practical problems Maria Kuhtinskaja What does a mass spectrometer do? It measures mass better than any other technique. It can give information about chemical structures. What are mass measurements
More informationDesorption Electrospray Ionization Coupled with Ultraviolet Photodissociation for Characterization of Phospholipid Isomers in Tissue Sections
Desorption Electrospray Ionization Coupled with Ultraviolet Photodissociation for Characterization of Phospholipid Isomers in Tissue Sections Dustin R. Klein, Clara L. Feider, Kyana Y. Garza, John Q. Lin,
More informationFuture Directions: Tissue and Cell Imaging Robert C. Murphy
LIPID MAPS Lipidomics Workshop April 19, 2009 www.lipidmaps.org m/z 806 (16:0a/22:6-PC) [M+H] + Future Directions: Tissue and Cell Imaging Robert C. Murphy 16:0/22:6 PC m/z 806.4 Department of Pharmacology
More informationLipid Class Separation Using UPC 2 /MS
Michael D. Jones, 1,3 Giorgis Isaac, 1 Giuseppe Astarita, 1 Andrew Aubin, 1 John Shockcor, 1 Vladimir Shulaev, 2 Cristina Legido-Quigley, 3 and Norman Smith 3 1 Waters Corporation, Milford, MA, USA 2 Department
More informationOzonolysis of phospholipid double bonds during electrospray. ionization: a new tool for structure determination
Ozonolysis of phospholipid double bonds during electrospray ionization: a new tool for structure determination Michael C. Thomas, Todd W. Mitchell, Stephen J. Blanksby Departments of Chemistry and Biomedical
More informationMALDI Imaging Mass Spectrometry
MALDI Imaging Mass Spectrometry Nan Kleinholz Mass Spectrometry and Proteomics Facility The Ohio State University Mass Spectrometry and Proteomics Workshop What is MALDI Imaging? MALDI: Matrix Assisted
More informationIonization Methods. Neutral species Charged species. Removal/addition of electron(s) Removal/addition of proton(s)
Ionization Methods Neutral species Charged species Removal/addition of electron(s) M + e - (M +. )* + 2e - electron ionization Removal/addition of proton(s) M + (Matrix)-H MH + + (Matrix) - chemical ionization
More informationHiroya Hidaka *1), Masaki Takiwaki 2), Mine Yamashita 2), Shinya Otsuki 1), Kenji Kawasaki 3), Mitsutoshi Sugano 3) and Takayuki Honda 4)
Mild acid hydrolysis of sphingolipids yields lysosphingolipids: a matrix-assisted laser desorption and ionization time-of-flight mass spectrometry study Hiroya Hidaka *1), Masaki Takiwaki 2), Mine Yamashita
More informationMass Spectrometry Course Árpád Somogyi Chemistry and Biochemistry MassSpectrometry Facility) University of Debrecen, April 12-23, 2010
Mass Spectrometry Course Árpád Somogyi Chemistry and Biochemistry MassSpectrometry Facility) University of Debrecen, April 12-23, 2010 Introduction, Ionization Methods Mass Analyzers, Ion Activation Methods
More informationImaging Mass Microscope
Imaging Mass Microscope imscope C146-E220 Introducing the New Era of Imaging Mass Spectrometry Imaging mass spectrometry is a revolutionary new technology. The instrument is a combination of an optical
More informationSUPPLEMENTARY DATA. Materials and Methods
SUPPLEMENTARY DATA Materials and Methods HPLC-UV of phospholipid classes and HETE isomer determination. Fractionation of platelet lipid classes was undertaken on a Spherisorb S5W 150 x 4.6 mm column (Waters
More informationLC-MS Analysis of Botanicals
Botanical workshop UAB, Sept 11, 26 LC-MS Analysis of Botanicals Jeevan K. Prasain, Ph.D. Department of Pharmacology & Toxicology, UAB Purdue-UAB Botanicals Center for Age-related Disease Applications
More informationPhospholipid characterization by a TQ-MS data based identification scheme
P-CN1716E Phospholipid characterization by a TQ-MS data based identification scheme ASMS 2017 MP-406 Tsuyoshi Nakanishi 1, Masaki Yamada 1, Ningombam Sanjib Meitei 2, 3 1 Shimadzu Corporation, Kyoto, Japan,
More informationMass spectrometry Technologies in Lipid chemistry
Mass spectrometry Technologies in Lipid chemistry Rabah Soliymani University Of Helsinki Protein Chemistry Unit Biomedicum Helsinki Rabah.soliymani@helsinki.fi Complex_&_dynamic_mixtures (few copies to
More informationMatrix Assisted Laser Desorption Ionization Time-of-flight Mass Spectrometry
Matrix Assisted Laser Desorption Ionization Time-of-flight Mass Spectrometry Time-of-Flight Mass Spectrometry. Basic principles An attractive feature of the time-of-flight (TOF) mass spectrometer is its
More informationLC/MS Method for Comprehensive Analysis of Plasma Lipids
Application Note omics LC/MS Method for Comprehensive Analysis of Plasma s Authors Tomas Cajka and Oliver Fiehn West Coast Metabolomics Center, University of California Davis, 451 Health Sciences Drive,
More informationWhat You Can t See Can Hurt You. How MS/MS Specificity Can Bite Your Backside
What You Can t See Can Hurt You How MS/MS Specificity Can Bite Your Backside Johan van den Heever, Tom Thompson, and Don Noot Agri-Food Laboratories Branch Advances in Trace rganic Residue Analysis early
More informationLOCALISATION, IDENTIFICATION AND SEPARATION OF MOLECULES. Gilles Frache Materials Characterization Day October 14 th 2016
LOCALISATION, IDENTIFICATION AND SEPARATION OF MOLECULES Gilles Frache Materials Characterization Day October 14 th 2016 1 MOLECULAR ANALYSES Which focus? LOCALIZATION of molecules by Mass Spectrometry
More informationNon targeted Lipidomic Analysis by Direct Infusion Mass Spectrometry. Jianzhong Chen, PhD Assistant Professor School of Optometry UAB
Non targeted Lipidomic Analysis by Direct Infusion Mass Spectrometry Jianzhong Chen, PhD Assistant Professor School of Optometry UAB 1 Lipidome: A subset of Metabolome https://en.wikipedia.org/wiki/lipidomics
More informationComparison of mass spectrometers performances
Comparison of mass spectrometers performances Instrument Mass Mass Sensitivity resolution accuracy Quadrupole 1 x 10 3 0.1 Da* 0.5-1.0 pmol DE-MALDI 2 x 10 4 20 ppm 1-10 fmol peptide 1-5 pmol protein Ion
More informationApplication Note # MT-91. High Quality MALDI Imaging of Proteins and Peptides in Small Rodent Organ Tissues. Bruker Daltonics.
Bruker Daltonics Application Note # MT-91 18385 Da 6230 Da 7843 Da High Quality MALDI Imaging of Proteins and Peptides in Small Rodent Organ Tissues New developments in MALDI instrumentation, laser technology
More informationImpact of Chromatography on Lipid Profiling of Liver Tissue Extracts
Impact of Chromatography on Lipid Profiling of Liver Tissue Extracts Application Note Clinical Research Authors Mark Sartain and Theodore Sana Agilent Technologies, Inc. Santa Clara, California, USA Introduction
More informationMethods in Mass Spectrometry. Dr. Noam Tal Laboratory of Mass Spectrometry School of Chemistry, Tel Aviv University
Methods in Mass Spectrometry Dr. Noam Tal Laboratory of Mass Spectrometry School of Chemistry, Tel Aviv University Sample Engineering Chemistry Biology Life Science Medicine Industry IDF / Police Sample
More informationToF-SIMS for Biological Research Sample Preparation Techniques
ToF-SIMS for Biological Research Sample Preparation Techniques Peter Sjövall SP Technical Research Institute of Sweden Borås, Sweden Göteborg Borås SP Technical Research Institute of Sweden www.sp.se Chemistry
More informationMetabolomic fingerprinting of serum samples by direct infusion mass spectrometry
Metabolomic fingerprinting of serum samples by direct infusion mass spectrometry Raúl González-Domínguez * Department of Chemistry, Faculty of Experimental Sciences. University of Huelva, Spain. * Corresponding
More informationSupplementary Information
Supplementary Information Molecular imaging of brain localization of liposomes in mice using MALDI mass spectrometry Annabelle Fülöp 1,2, Denis A. Sammour 1,2, Katrin Erich 1,2, Johanna von Gerichten 4,
More informationSupporting information
Supporting information A novel lipidomics workflow for improved human plasma identification and quantification using RPLC-MSn methods and isotope dilution strategies Evelyn Rampler 1,2,3, Angela Criscuolo
More informationIon Source. Mass Analyzer. Detector. intensity. mass/charge
Proteomics Informatics Overview of spectrometry (Week 2) Ion Source Analyzer Detector Peptide Fragmentation Ion Source Analyzer 1 Fragmentation Analyzer 2 Detector b y Liquid Chromatography (LC)-MS/MS
More informationMS-IMS (MALDI-IMAGING)?
MS-IMS (MALDI-IMAGING)? Protein Chemistry/Proteomics and Peptide Synthesis and Array Unit Biomedicum Helsinki and Haartman Institute E-Mail: marc.baumann@helsinki.fi (http://research.med.helsinki.fi/corefacilities/proteinchem)
More informationSupporting information
Supporting information Figure legends Supplementary Table 1. Specific product ions obtained from fragmentation of lithium adducts in the positive ion mode comparing the different positional isomers of
More informationApplication Note # MT-94 Direct Read-out of Thin Layer Chromatography (TLC) using MALDI-TOF
Bruker Daltonics Application Note # MT-94 Direct Read-out of Thin Layer Chromatography (TLC) using MALDI-TOF Thin Layer Chromatography (TLC) is broadly established to separate, characterize and quantify
More informationRelative Quantitation of Human Polymorphonuclear Leukocyte Cell Membrane GPEtn Lipids
Relative Quantitation of Human Polymorphonuclear Leukocyte Cell Membrane GPEtn Lipids Using the QTRAP System with mtraq Reagents Karin A. Zemski-Berry 1, John M. Hevko 2, and Robert C. Murphy 1 1 Department
More informationPost-translational Modifications to Human Bile Acid CoA:Amino Acid N- acyltransferase
Post-translational Modifications to uman Bile Acid oa:amino Acid - acyltransferase Erin Shonsey UAB Graduate Student September 12, 2006 onjugation of Bile Acids SoA + + 3 2 2 S 3 - hbat oa-s 2 2 S - 3
More informationMetabolite identification in metabolomics: Metlin Database and interpretation of MSMS spectra
Metabolite identification in metabolomics: Metlin Database and interpretation of MSMS spectra Jeevan K. Prasain, PhD Department of Pharmacology and Toxicology, UAB jprasain@uab.edu Outline Introduction
More informationPrinciples of Shotgun Lipidomics
Principles of Shotgun Lipidomics Xianlin Han Diabetes and Obesity Research Center Sanford-Burnham Medical Research Institute Lake Nona Orlando, FL 32827 What is shotgun lipidomics? Original definition
More informationMass spectrometric imaging (MSI) has recently
Sublimation as a Method of Matrix Application for Mass Spectrometric Imaging Joseph A. Hankin, Robert M. Barkley, and Robert C. Murphy Department of Pharmacology, University of Colorado Health Sciences
More informationImaging of lipid species by MALDI mass spectrometry
Imaging of lipid species by MALDI mass spectrometry Robert C. Murphy, 1 Joseph A. Hankin, and Robert M. Barkley Department of Pharmacology, MS 8303 University of Colorado Denver, Aurora, CO 80045 Abstract
More informationIntroduction to LC/MS/MS
Trends in 2006 Introduction to LC/MS/MS By Crystal Holt, LC/MS Product Specialist, Varian Inc. Toxicology laboratories Increased use of LC/MS Excellent LD Cheaper (still expensive) Much more robust Solves
More informationmethods A simple desalting method for direct MALDI mass spectrometry profiling of tissue lipids
methods A simple desalting method for direct MALDI mass spectrometry profiling of tissue lipids Hay-Yan J. Wang, 1, *,, Cheng Bin Liu, * and Hsuan-Wen Wu * Department of Biological Sciences,* and Center
More informationMolecular Cartography:
Molecular Cartography: Moving Towards Combined Topographical and Chemical Imaging Using AFM and Mass Spectrometry Olga S. Ovchinnikova Organic and Biological Mass Spectrometry Group, Chemical Sciences
More informationFundamentals of Soft Ionization and MS Instrumentation
Fundamentals of Soft Ionization and MS Instrumentation Ana Varela Coelho varela@itqb.unl.pt Mass Spectrometry Lab Analytical Services Unit Index Mass spectrometers and its components Ionization methods:
More informationWelcome! Mass Spectrometry meets Cheminformatics WCMC Metabolomics Course 2014 Tobias Kind. Course: Search of MS/MS files with the NIST MS Search GUI
Biology Informatics Chemistry Welcome! Mass Spectrometry meets Cheminformatics WCMC Metabolomics Course 2014 Tobias Kind Course: Search of MS/MS files with the NIST MS Search GUI http://fiehnlab.ucdavis.edu/staff/kind
More informationSUPPORTING INFORMATION. Nontargeted quantitation of lipid classes using hydrophilic interaction liquid
SUPPORTING INFORMATION Nontargeted quantitation of lipid classes using hydrophilic interaction liquid chromatography - electrospray ionization mass spectrometry with single internal standard and response
More informationSelexION Technology for Lipid Analysis: Pushing the Boundaries of Lipidomics
ANSWERS FOR SCIENCE. KNOWLEDGE FOR LIFE. SelexION Technology for Lipid Analysis: Pushing the Boundaries of Lipidomics Baljit Ubhi, Ph.D ASMS Baltimore, June 2014 Lipidomics Profiling Needs and Deliverables
More informationComponents of a Mass Spectrometer
Components of a Mass Spectrometer Sample Introduction Inlet GC LC Direct Insertion (Syringe/Probe) Ionization Ion Separation Ion Detection Ion Source EI,CI,,, MALDI Mass Analyzer Under vacuum TOF, Quadrupole,
More informationMASS SPECTROMETRY BASED METABOLOMICS. Pavel Aronov. ABRF2010 Metabolomics Research Group March 21, 2010
MASS SPECTROMETRY BASED METABOLOMICS Pavel Aronov ABRF2010 Metabolomics Research Group March 21, 2010 Types of Experiments in Metabolomics targeted non targeted Number of analyzed metabolites is limited
More informationEssential Lipidomics Experiments using the LTQ Orbitrap Hybrid Mass Spectrometer
Application Note: 367 Essential Lipidomics Experiments using the LTQ rbitrap Hybrid Mass Spectrometer Thomas Moehring 1, Michaela Scigelova 2, Christer S. Ejsing 3, Dominik Schwudke 3, Andrej Shevchenko
More informationNanostructured ZnO as a solution-processable transparent electrode material for low-cost photovoltaics
Nanostructured ZnO as a solution-processable transparent electrode material for low-cost photovoltaics Investigators P.I: Alberto Salleo, Assistant Professor, Materials Science and Engineering Dr. Ludwig
More informationThe vapour of imidazolium based ionic liquids: a mass spectrometry study
The vapour of imidazolium based ionic liquids: a mass spectrometry study A. Deyko, K. R. J. Lovelock*, P. Licence, R. G. Jones School of Chemistry The University of Nottingham University Park Nottingham
More informationLECTURE 3. Ionization Techniques for Mass Spectrometry
LECTURE 3 Ionization Techniques for Mass Spectrometry Jack Henion, Ph.D. Emeritus Professor, Analytical Toxicology Cornell University Ithaca, NY 14850 Lecture 3, Page 1 Contents Electron ionization (EI)
More informationMass Spectrometry. Mass spectrometer MALDI-TOF ESI/MS/MS. Basic components. Ionization source Mass analyzer Detector
Mass Spectrometry MALDI-TOF ESI/MS/MS Mass spectrometer Basic components Ionization source Mass analyzer Detector 1 Principles of Mass Spectrometry Proteins are separated by mass to charge ratio (limit
More informationMALDI-TOF Mass Spectrometry: A New Rapid ID Method in Clinical Microbiology
MALDI-TOF Mass Spectrometry: A New Rapid ID Method in Clinical Microbiology Patrick R. Murray, PhD WW Director, Scientific Affairs BD Diagnostic Systems Outline MALDI-TOF is the most important innovation
More informationMetabolite identification in metabolomics: Database and interpretation of MSMS spectra
Metabolite identification in metabolomics: Database and interpretation of MSMS spectra Jeevan K. Prasain, PhD Department of Pharmacology and Toxicology, UAB jprasain@uab.edu utline Introduction Putative
More informationAmmonia chemical ionization mass spectrometry of intact diacyl phosphatidylcholine
Ammonia chemical ionization mass spectrometry of intact diacyl phosphatidylcholine C. G. Crawford and R. D. Plattner Northern Regional Research Center, Agricultural Research Service, United States Department
More informationSupporting Information
Supporting Information Development of a High Coverage Pseudotargeted Lipidomics Method Based on Ultra-High Performance Liquid Chromatography-Mass Spectrometry Qiuhui Xuan 1,2#, Chunxiu Hu 1#, Di Yu 1,2,
More informationDetermination of the Structure of Sphingomyelin by Tandem Mass Spectrometry and Matrix - Assisted Laser Desorption/Ionization
The University of Akron IdeaExchange@UAkron Honors Research Projects The Dr. Gary B. and Pamela S. Williams Honors College Spring 2015 Determination of the Structure of Sphingomyelin by Tandem Mass Spectrometry
More informationReal time connection of Mass Spectrometry with Medicine and Surgery
GBS 724 March 18, 2016 Real time connection of Mass Spectrometry with Medicine and Surgery Stephen Barnes, PhD Professor of Pharmacology & Toxicology Director, Targeted Metabolomics and Proteomics Laboratory
More information(III) MALDI instrumentation
Dr. Sanjeeva Srivastava (I) Basics of MALDI-TF (II) Sample preparation In-gel digestion Zip-tip sample clean-up Matrix and sample plating (III) MALDI instrumentation 2 1 (I) Basics of MALDI-TF Analyte
More informationTandem mass spectrometry analysis of prostaglandins and isoprostanes
Tandem mass spectrometry analysis of prostaglandins and isoprostanes Jeevan Prasain jprasain@uab.edu 6-2612 verview Introduction to PGs and their synthesis Mass spectrometry characterization of PGs and
More informationChapter 12: Mass Spectrometry: molecular weight of the sample
Structure Determination: hapter 12: Mass Spectrometry- molecular weight of the sample; formula hapter 12: Infrared Spectroscopy- indicated which functional groups are present hapter 13: Nuclear Magnetic
More informationSupplementary Information: Liquid-liquid phase coexistence in lipid membranes observed by natural abundance 1 H 13 C solid-state NMR
Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is the wner Societies 28 Supplementary Information: Liquid-liquid phase coexistence in lipid membranes observed
More informationMore structural information with MS n
PRODUCT SPECIFICATIONS The LTQ XL linear ion trap mass spectrometer More structural information with MS n The LTQ XL linear ion trap mass spectrometer delivers more structural information faster and with
More informationIon fragmentation of small molecules in mass spectrometry
Ion fragmentation of small molecules in mass spectrometry Jeevan Prasain jprasain@uab.edu 6-2612 Nomenclature: the main names and acronyms used in mass spectrometry Molecular ion: Ion formed by addition
More informationAnalysis of Triglycerides in Cooking Oils Using MALDI-TOF Mass Spectrometry and Principal Component Analysis
Analysis of Triglycerides in Cooking Oils Using MALDI-TOF Mass Spectrometry and Principal Component Analysis Kevin Cooley Chemistry Supervisor: Kingsley Donkor 1. Abstract Triglycerides are composed of
More informationLC/MS/MS SOLUTIONS FOR LIPIDOMICS. Biomarker and Omics Solutions FOR DISCOVERY AND TARGETED LIPIDOMICS
LC/MS/MS SOLUTIONS FOR LIPIDOMICS Biomarker and Omics Solutions FOR DISCOVERY AND TARGETED LIPIDOMICS Lipids play a key role in many biological processes, such as the formation of cell membranes and signaling
More information1. Sample Introduction to MS Systems:
MS Overview: 9.10.08 1. Sample Introduction to MS Systems:...2 1.1. Chromatography Interfaces:...3 1.2. Electron impact: Used mainly in Protein MS hard ionization source...4 1.3. Electrospray Ioniztion:
More informationProteomic Biomarker Discovery in Breast Cancer
Proteomic Biomarker Discovery in Breast Cancer Rob Baxter Laboratory for Cellular and Diagnostic Proteomics Kolling Institute, University of Sydney, Royal North Shore Hospital robert.baxter@sydney.edu.au
More informationComprehensive Lipid Profiling of Human Liver Tissue Extracts of Non-Alcoholic Fatty Liver Disease
Comprehensive Lipid Profiling of Human Liver Tissue Extracts of Non-Alcoholic Fatty Liver Disease Multiplexed Precursor Ion Scanning and LipidView Software Brigitte Simons 1 and Bianca Arendt 2 1 AB SCIEX,
More informationSupporting Information. Evolution of atomically precise silver clusters to superlattices
Copyright WILEY-VCH Verlag GmbH & Co. KGaA, 69469 Weinheim, Germany, 2012. Supporting Information for Part. Part. Sys. Charact., DOI: 10.1002/ppsc.((please add manuscript number)) Evolution of atomically
More informationQuantitation of Sphingolipids in Tissue Extracts by LC/MS/MS
Quantitation of Sphingolipids in Tissue Extracts by LC/MS/MS Alexei Belenky CASSS, Meritage Resort, Napa 2008 Outline Role of lipid analysis in drug discovery and disease diagnostics Analytical tools and
More informationMass Spectrometry. Actual Instrumentation
Mass Spectrometry Actual Instrumentation August 2017 See also http://www.uni-bielefeld.de/chemie/analytik/ms f additional infmation 1. MALDI TOF MASS SPECTROMETRY ON THE ULTRAFLEX 2 2. ESI MASS SPECTROMETRY
More informationAnalysis of Peptides via Capillary HPLC and Fraction Collection Directly onto a MALDI Plate for Off-line Analysis by MALDI-TOF
Analysis of Peptides via Capillary HPLC and Fraction Collection Directly onto a MALDI Plate for Off-line Analysis by MALDI-TOF Application Note 219 Joan Stevens, PhD; Luke Roenneburg; Kevin Fawcett (Gilson,
More informationThe detergent-solubilized and gel filtration purified rhodopsin was partitioned against
Supplement Jastrzebska et al. Materials and Methods The detergent-solubilized and gel filtration purified rhodopsin was partitioned against H 2 O/MeOH/CHCl 3, and the bottom layer was removed, dried down,
More informationApplication of LC/Electrospray Ion Trap Mass Spectrometry for Identification and Quantification of Pesticides in Complex Matrices
Application ote #LCMS-2 esquire series Application of LC/Electrospray Ion Trap Mass Spectrometry for Identification and Quantification of Pesticides in Complex Matrices Introduction The simple monitoring
More informationShotgun Proteomics MS/MS. Protein Mixture. proteolysis. Peptide Mixture. Time. Abundance. Abundance. m/z. Abundance. m/z 2. Abundance.
Abundance Abundance Abundance Abundance Abundance Shotgun Proteomics Protein Mixture 1 2 3 MS/MS proteolysis m/z 2 3 Time µlc m/z MS 1 m/z Peptide Mixture m/z Block Diagram of a Mass Spectrometer Sample
More informationNew Solvent Grade Targeted for Trace Analysis by UHPLC-MS
New Solvent Grade Targeted for Trace Analysis by UHPLC-MS Subhra Bhattacharya, Deva H. Puranam, and Stephen C. Roemer Thermo Fisher Scientific Fisher Chemical, One Reagent Lane, Fair Lawn, NJ Material
More informationLipid Analysis ISOLATION, SEPARATION, IDENTIFICATION AND. Bridgwater, England LIPIDOMIC ANALYSIS. Fourth Edition. Invergowrie, Dundee, Scotland
Lipid Analysis ISOLATION, SEPARATION, IDENTIFICATION AND LIPIDOMIC ANALYSIS Fourth Edition WILLIAM W.CHRISTIE MRS Lipid Analysis Unit, Scottish Crop Research Institute, Dundee, Scotland Invergowrie, and
More information