293T cells were transfected with indicated expression vectors and the whole-cell extracts were subjected
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1 SUPPLEMENTARY INFORMATION Supplementary Figure 1. Formation of a complex between Slo1 and CRL4A CRBN E3 ligase. (a) HEK 293T cells were transfected with indicated expression vectors and the whole-cell extracts were subjected to co-immunoprecipitation (co-ip) assays. Slo1(F), full length of Slo1. Slo1(C), intracellular domain of Slo1. (b) Flag-Slo1(N) or Flag-Slo1(R1), as a control, were transfected into HEK 293T cells together with CRBN and DDB1 expression constructs. Protein extracts were immunoprecipitated using Flag M2 beads. Slo1(N), membrane-spanning N terminus of Slo1. Slo1(R1), RCK1 domain of Slo1. (c) HEK 293T cells were transfected with indicated expression vectors and the whole-cell extracts were subjected to co-immunoprecipitation (co-ip) assays. (d) HEK 293T cells were co-transfeted with vectors encoding Flag-Slo1(R1), HA-CRBN and Myc-Cul4A. Protein extracts were immunoprecipitated using Flag M2 beads. (e) HEK 293T cells were co-transfected with vectors encoding Flag-Slo1(C), HA-CRBN and Myc-Cul4A. Protein extracts were immunoprecipitated using anti-myc antibody. (f) Total tissue lysates extracted from 4 wild type mice cerebrum were immunoprecipitated by BK channel antibody and analysed with indicated antibodies. Non-specific mouse IgG was used as control.
2 Supplementary Figure 2. Slo1 is ubiquitinated by CRL4A CRBN E3 ligase in HEK 293T cells. (a) HEK 293T cells were transfected with indicated expression vectors and subjected to Slo1 ubiquitination (upper) and protein expression (lower) assays. Numerical band intensity was measured by NIH Image J and indicated on the figure. (b,c) Effects on BK channel ubiquitination by treating HEK 293T cells with thalidomide (50 µm) for 6 hrs before harvest. Cell lysates were immunoprecipitated and analysed by Western blot. Ub, ubiquitin.
3 Supplementary Figure 3. BK channels are not targeted for proteasome-dependant degradation by CRL4A CRBN E3 ligase. Effects on protein levels of Slo1 by treating cells with MG132 (20 µm) for 6 hrs before harvest when co-transfected with either Cul4A, Cul4B or DDB1 in HEK 293T cells.
4 Supplementary Figure 4. CRL4A CRBN E3 ligase inhibits the trafficking and surface expression of BK channels in HEK 293 cells. Confocal fluorescent imaging of HEK 293 cells transfected with expression vectors for Slo1-GFP and mcherry-crbn or mcherry-crbn(δmid). ER-Tracker TM was used to stain ER. White arrows indicate the distribution of GFP fusion BK channels on cell membranes. Scale bar, 10µm.
5 Supplementary Figure 5. Thalidomide and MLN4924 inhibit the effect of CRL4A CRBN E3 ligase on the distribution of BK channels. (a) Immunofluorescence of HeLa cells under nonpermeabilized conditions, which were transfected with YFP-CRBN and Flag-Slo1 and treated with 50 µm thalidomide (Thal) for 6 hrs before harvest. Scale bar, 10µm. (b) Confocal fluorescent imaging of HEK 293 cells transfected with Slo1-GFP and mcherry-crbn and treated with 50 µm thalidomide or 0.1 µm MLN4924 for 6 hrs. White arrows indicate the distribution of GFP fusion BK channels on cell membranes. Scale bar, 10µm.
6 Supplementary Figure 6. The inhibition of CRL4A CRBN E3 ligase activity enhanced the surface expression of BK channels. (a) Confocal imaging of HeLa cells transfected with Flag-Slo1-HA and CRBN or CRBN(ΔMid). The surface expressed BK channels and total expressed BK channels were labeled by Flag antibody and HA antibody under nonpermeabilized and permeabilized conditions separately. Scale bar, 20µm. (b) Quantification the ratio of surface expressed BK channels to total expressed channels in HeLa cells by densitometry with the presence of CRBN(WT or ΔMid). n=9. (c) Confocual imaging of HeLa cells transfected with Flag-Slo1-HA and YFP-CRBN and treated with thalidomide (50 µm) 6 hrs before harvest. DMSO was used as control. Scale bar, 10µm. (d) Quantification the ratio of surface expressed BK channels to total expressed channels in HeLa cells. n=4-6. Results in (b) and (d) are shown as means and s.e.m. *p<0.05, N.S., not significant. determined by the Student s t-test.
7 Supplementary Figure 7. CRL4A CRBN E3 ligase inhibit trafficking of BK channels to neuronal surface. (a,b) Confocal images of rat primary hippocampal neurons transfected with expression vectors for Slo1-GFP and mcherry-crbn or mcherry-crbn(δmid). Cell treatment and Images acquirement were done as in Figure 2a. Scale bar, 10µm.
8 Supplementary Figure 8. DDB1 is conditionally knocked out in hippocampal and cortex neurons of DDB1 F/F ; Camk2a-Cre mice. (a) The genotypes were detected by PCR and the expression levels of DDB1 were assessed using Western blot. (b) Immunohistochemistry staining of DDB1 in mouse hippocampus and cortex. Scale bar, 50µm.
9 Supplementary Figure 9. The function of CRL4A CRBN E3 ligase blocked in vivo lead to more serious epilepsy in PTZ-induced seizure mice model. (a) Quantitative distribution of mice at different seizure stages of epilepsy between DDB1 F/F and DDB1 F/F ; Camk2α-Cre mice after PTZ treatment. (b,c) Quantitative distribution of mice at different seizure stages of epilepsy between (b) DMSO and thalidomide injected mice, or (c) DMSO and paxilline injected mice after PTZ treatment.
10 Supplementary Figure 10. Schematic model for the molecular mechanism of epilepsy prevented by CRL4A CRBN through ubiquitinating BK channels. Normally, Slo1 is ubiquitinated by CRL4A CRBN and retained in the ER. When the activity of CRL4A CRBN E3 ligase activity is compromised by chemical inhibitors or genetic alteration, the de-ubiquitinated BK channel will move from the ER to the plasma membrane, leading to enhanced channel activity and possibly the onset of epilepsy.
11 Supplementary Figure 11. Western blot scanned films. Boxes highlight lanes used in figures.
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(A) SW480, DLD1, RKO and HCT116 cells were treated with DMSO or XAV939 (5 µm)
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a Marker Ripk3 +/ 5 bp 3 bp b Ischemia (3 min) Reperfusion (4 h) d 2 mg/kg i.p. 1 w 5 w Sacrifice for IF size A subset for echocardiography and morphological analysis c Ischemia (3 min) Reperfusion (8
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www.sciencesignaling.org/cgi/content/full/8/407/ra127/dc1 Supplementary Materials for Loss of FTO in adipose tissue decreases Angptl4 translation and alters triglyceride metabolism Chao-Yung Wang,* Shian-Sen
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a c e doi:10.1038/nature10407 b d f Supplementary Figure 1. SERCA2a complex analysis. (a) Two-dimensional SDS-PAGE gels of SERCA2a complexes. A silver-stained SDSPAGE gel is shown, which reveals a 12 kda
T H E J O U R N A L O F C E L L B I O L O G Y
Supplemental material Chen et al., http://www.jcb.org/cgi/content/full/jcb.201210119/dc1 T H E J O U R N A L O F C E L L B I O L O G Y Figure S1. Lack of fast reversibility of UVR8 dissociation. (A) HEK293T
Intracellular MHC class II molecules promote TLR-triggered innate. immune responses by maintaining Btk activation
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(A) RT-PCR for components of the Shh/Gli pathway in normal fetus cell (MRC-5) and a
Supplementary figure legends Supplementary Figure 1. Expression of Shh signaling components in a panel of gastric cancer. (A) RT-PCR for components of the Shh/Gli pathway in normal fetus cell (MRC-5) and
Supplementary Fig. 1. GPRC5A post-transcriptionally down-regulates EGFR expression. (a) Plot of the changes in steady state mrna levels versus
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Supplementary Figure 1. The mir-182 binding site of SMAD7 3 UTR and the. mutated sequence.
Supplementary Figure 1. The mir-182 binding site of SMAD7 3 UTR and the mutated sequence. 1 Supplementary Figure 2. Expression of mir-182 and SMAD7 in various cell lines. (A) Basal levels of mir-182 expression
p = formed with HCI-001 p = Relative # of blood vessels that formed with HCI-002 Control Bevacizumab + 17AAG Bevacizumab 17AAG
A.. Relative # of ECs associated with HCI-001 1.4 1.2 1.0 0.8 0.6 0.4 0.2 0.0 ol b p < 0.001 Relative # of blood vessels that formed with HCI-001 1.4 1.2 1.0 0.8 0.6 0.4 0.2 0.0 l b p = 0.002 Control IHC:
genome edited transient transfection, CMV promoter
Supplementary Figure 1. In the absence of new protein translation, overexpressed caveolin-1-gfp is degraded faster than caveolin-1-gfp expressed from the endogenous caveolin 1 locus % loss of total caveolin-1-gfp
SUPPLEMENTARY FIGURES
SUPPLEMENTARY FIGURES 1 Supplementary Figure 1, Adult hippocampal QNPs and TAPs uniformly express REST a-b) Confocal images of adult hippocampal mouse sections showing GFAP (green), Sox2 (red), and REST
A. List of selected proteins with high SILAC (H/L) ratios identified in mass
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SHREE ET AL, SUPPLEMENTAL MATERIALS. (A) Workflow for tumor cell line derivation and orthotopic implantation.
SHREE ET AL, SUPPLEMENTAL MATERIALS SUPPLEMENTAL FIGURE AND TABLE LEGENDS Supplemental Figure 1. Derivation and characterization of TS1-TGL and TS2-TGL PyMT cell lines and development of an orthotopic
SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods
SUPPLEMENTARY INFORMATION SUMO1 modification of PTEN regulates tumorigenesis by controlling its association with the plasma membrane Jian Huang 1,2#, Jie Yan 1,2#, Jian Zhang 3#, Shiguo Zhu 1, Yanli Wang
Supplementary Figures
Supplementary Figures Supplementary Figure 1 DOT1L regulates the expression of epithelial and mesenchymal markers. (a) The expression levels and cellular localizations of EMT markers were confirmed by