MAGEDMetaheuristicApproachonGeneExpressionDataPredictingtheCoronaryArteryDiseaseandTheScopeofUnstableAnginaandMyocardialInfarction

Size: px
Start display at page:

Download "MAGEDMetaheuristicApproachonGeneExpressionDataPredictingtheCoronaryArteryDiseaseandTheScopeofUnstableAnginaandMyocardialInfarction"

Transcription

1 Global Journal of Coputer Scence and Technology: C Software & Data Engneerng Volue 6 Issue 4 Verson 0 Year 06 Type: Double Blnd Peer Revewed Internatonal Research Journal Publsher: Global Journals Inc (USA Onlne ISS: & Prnt ISS: MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and the Scope of Unstable Angna and Myocardal Infarcton By Eeela & MSPras Babu GITAM Unversty Abstract - The Genetc rs predcton strateges found n practce for coronary artery dsease are not sgnfcant to estate the scope of verse cardovascular events such as unstable angna and yocardal nfarcton Hence n regard to ths obectve, ths anuscrpt contrbuted a etaheurstc approach to predct coro- nary artery dsease and the scope of unstable angna and yocardal nfarcton The proposed etaheurstc s bult fro the gene expresson data of blood saples collected fro patents wth coronary artery dsease dagnosed, unstable angna and Myocardal Infarcton The data also ncludes gene expresson data collected fro the blood saples taen fro the people clncally proven as salubrous (healthy The relaton between genes and gene expressons are consdered as the state of nput to devse the etaheurstc Keywords: cro array, coronary artery dsease, unstable angna, yocardal nfarcton, gene expresson data, gene expresson proflng, etaheurstcs, achne learnng GJCST-C Classfcaton : J3, H MAGEDMetaheurstcApproachonGeneExpressonDataPredctngtheCoronaryArteryDseaseandTheScopeofUnstableAngnaandMyocardalInfarcton Strctly as per the coplance and regulatons of: 06 Eeela & MSPras Babu Ths s a research/revew paper, dstrbuted under the ters of the Creatve Coons Attrbuton-oncoercal 30 Unported Lcense perttng all non-coercal use, dstrbuton, and reproducton nany edu, provded the orgnal wor s properly cted

2 Abstract - The Genetc rs predcton strateges found n practce for coronary artery dsease are not sgnfcant to estate the scope of verse cardovascular events such as unstable angna and yocardal nfarcton Hence n regard to ths obectve, ths anuscrpt contrbuted a etaheurstc approach to predct coro- nary artery dsease and the scope of unstable angna and yocardal nfarcton The proposed etaheurstc s bult fro the gene expresson data of blood saples collected fro patents wth coronary artery dsease dagnosed, unstable angna and Myocardal Infarcton The data also ncludes gene expresson data collected fro the blood saples taen fro the people clncally proven as salubrous (healthy The relaton between genes and gene expressons are consdered as the state of nput to devse the etaheurstc In order to fnd the confdence of the relaton between gene and gene expresson a bpartte graph s bult between the The experental study evncng that the predcton perforance of the proposed odel s substantal that copared to other bencharng odels Keywords: cro array, coronary artery dsease, unstable angna, yocardal nfarcton, gene expresson data, gene expresson proflng, etaheurstcs, achne learnng I Introducton Cardovascular dseases are the crtcal reason of huan deaths happenng worldwde The statstcs ndcatng that ths dsease causes annually around 73 llon deaths []The nequate blood supply to the heart causes necross of yocardal tssue, whch s clncally referred as Myocardal Infarcton ( The was claed 76 llon deaths aong 58 llon deaths worldwde n 005 [] The vanceents n clncal practces to dagnose and prevent are evnced to be not sgnfcant, snce the count of huan deaths due to s hgh that copared to the deaths caused by any other dsease [] [] The current dagnoss of s based on clncal syptos ncludng chest pan and dffculty to breath, ECG pattern varants, and potental drop and rase of blood floatng n cardac uscles (cardac troponns Author α: Assstant Professor, Departent of CSE GITAM Unversty, Vsahapatna, AP, IDIA e-al: ehaneela@galco Author σ: Professor, Departent of CS & SE Andhra Unversty, Vsahapatna, AP, IDIA e-al: profspbabu@galco also referred as ctns [3] Though the phenoenal vances n clncal dagnoss strateges found, stll the substantal constrants are evnced n current clncal dagnoss strateges The vances n hs-ctn assays [4] have evnced hgh detecton of cardo vascular dsease cases (Increased true postve rate but sgnfcant noral cases have been labeled as cardo vascular prone (decreased true negatve rate, whch s a potental constrant Another vanced approach of dagnose the cardo vascular dsease dagnostc easure s the cardac RAs as boarers [5] The predcton outcoes of ths odel are trval due to lted sze and tssue specfc expresson Hence t s obvous to have ore sgnfcant and autoated detecton strateges, whch are usng the cardac RAs as prary nput [6] The seru nflaatory arers such as BP, CRP are also consdered as cardovascular boarers but the detecton accuracy observed wth slght proveent [7][8][9] The acts such as clncal pathology and bology are the crucal to defne cardac boarers, whch are expensve and less accurate In contrast to ths, the gene expresson proflng quantfes the gene expressons fored by the large quantty of genes n order to dentfy boarers, whch s analogous and concurrent across the ultple pathways Hence the gene expresson proflng s potental and feasble to quantfy the boarers to dagnose cardo vascular dseases [0] The boarers defned by Gene expresson proflng are potental and those are not evnced by the pathology and bology based clncal processes The rest of anuscrpt descrbes the related wor n secton, the Metaheurstc Approach on Gene expresson Data (MAGED that followed by secton 4, whch elaborates the experental study of the proposal Fnally the secton 5 concludes the contrbuton of the anuscrpt II Related Wor Gene expresson analyss s a potental approach to dscover profound boarers of cardo vascular dseases The conteporary lterature contans sgnfycant contrbutons n defnng boarers through gene Year 06 C MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and the Scope of Unstable Angna and Myocardal Infarcton Eeela α & MSPras Babu σ Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I 06 Global Journals Inc (US

3 MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and The Scope of Unstable Angna and Myocardal Infarcton Year 06 Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I expresson analyss Rand et al, [] devsed a gene expresson analyss that conceded 48 genes assocated to the coposton of plaques found n arteres Many of these genes were not consdered for atheroscleross n earler dagnoss strateges Archac et al,[] proposed a gene expresson proflng strategy that resulted 56 dfferent genes for atherosclerossprone and salubrous huan coronary arteres Aong these 56, the 49 genes were not assocated to coronary artery dsease earler The odel devsed n [3] dscovered set of genes those enables classfcaton accordng to age and sex, whch are havng strong assocaton wth obstreperous n the patents, who are not dagnosed as dabetc The contrbutons n [4] and [5] profled varant gene expressons to dfferentate the cardo yopathes wth nfluence of schec and nonschec condtons Mn KD et al, [6] contrbuted proflng and analyss of gene expressons to notce the dvergent genes assocated to congestve heart falure Suresh R et al, [7] studed the salubrous and patents that dscovered boarers and balanced pathways those sgnfcant evnce the reappearance n patents effected once wth Lew et al,[8] defned sequence tags fro gene expressons usng croarray analyss that copares RA olecules found n cellular coponents of the blood wth RA olecules found n9dvergent huan tssues coprsng heart The correlaton observed fro ths coparson concluded that 84% of RA olecules were overlapped wth RA olecules of heart and 80% were overlapped wth RA olecules of other tssues RA olecules of cellular coponents of the blood are costng nal and feasble to access n order to substtute gene expresson n other tssues The contrbutons found n conteporary lterature are specfc to dscover the nfluental genes of Myocardal Infarcton one of these are capable to dentfy the gven gene expresson s prone to under and or the expresson s salubrous Ths evnces the need of novel contrbutons to dscover the state of a gven gene expresson s prone to under and or salubrous Ths helps to deploy the case based reasonng to treat the patents prone to under and dfferently In ths regard ths anuscrpt attepted to defne etaheurstc approach on gene expresson data (MAGED to dscover the state of a gven gene expresson s prone to under and or salubrous The MAGED s achne learnng strategy that learns fro the labeled gene expresson data of Carda Vascular Dseased, Unstable Angna, Myocardal Infarcton and Salubrous cases III Metaheurstc Approach on Gene Expresson Data The obectve of the MAGED s to defne a etaheurstc scale by the nowledge ganed fro the gven gene expresson data In order to ths the gven gene expressons are parttoned nto ther respectve categores of coronary artery dsease (, unstable angna (, Myocardal Infarcton ( and salubrous (blood saples taen were dagnosed as healthy The data also ncludes gene expresson data collected fro the blood saples taen fro the people clncally proven as noral The genes nvolved n each gene expresson are consdered as features of the respectve category Snce the gene expresson contans dense nuber of genes and aorty of the ay be nsgnfcant to respectve category of the dsease Henceforth, the feature optzaton process (see sec 3 wll be carred out to elnate these nsgnfcant features The gene range wll be dscretzed further to copare two genes through equalty by approxaton (see sec 3 Afterwards the confdence of each feature towards all categores of gene expresson data wll be assessed (see sec 33 that follows the assessent of each gene expresson confdence aganst the features of all categores (see sec 34 Further the confdence obtaned for each feature and gene expresson of respectve category wll be used as nput to defne the etaheurstc scales to estate the scope of coronary artery dsease, the unstable angna and yocardal nfarcton a Feature Optzaton For each dsease context consdered, the gene expresson dataset D { e (, e (, e ( } of sze D D wll be consdered for tranng towards defnng etaheurstc scale Each gene expresson s representted by sequence of genes for the set of features selected of respectve dseases context Ths descrpton bnds to all datasets ofgene expressons representng coronary artery dseases, Unstable Angna, Myocardal Infarcton Let Dn { en (, en (,, en ( D n } be the set of gene expressons collected fro the blood saples of salubrous cases The sets F { f(, f(,, f( } and n F n F F { f( n, f( n,, f( n } are feature sets of gene expressons represented by D and Dn respectvely The attrbute set G( { g(, g(, g ( } be the set of genes as G ( values observed for feature f( of gene expressons represented by D Slarly the attrbute set G( n { g( n, g( n, g ( n } be the set of genes G( n as values observed for feature expressons represented by D n f( n of gene Snce the gene expresson s the cobnaton of nuerous count of genes, the sze of feature set can le to process coplexty In order to overcoe the 06 Global Journals Inc (US

4 MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and The Scope of Unstable Angna and Myocardal Infarcton process coplexty, the nsgnfcant features should be dentfed and dscarded The feature f( of F s s to be nsgnfcant feature, f genes G ( of f( are alost slar to the genes Gn ( of feature f( n of Fn Hence to dentfy the nsgnfcant features, we opt hang dstance that appled on genes of each feature as vectors fro each dsease and noral cases The hang dstance wth 0 or less than the gven threshold ndcates that the respectve feature s nsgnfcant The process of hang dstance s explored below: Hang Dstance The value of Hang Dstance obtaned here s to denote the dfference between genes assgned to sae feature fro gene expresson data of dseased and noral cases Ths s one of the sgnfcant strategy to assess the dfference between to eleents n codng theory The hang dstance between gven vectors CX { cx, cx,, cx n }& CY { cy, cy,, cy } of sze n and respectvely wll be easured as follows: Let CZ φ // s a vector of sze 0 foreach {,,3,ax( n } Begn f ({ cx cx CX} { cy cy CY } 0 then CZ { cx cx CX} { cy cy CY} Else hd CX CY CZ CZ CZ{} // hdcx CY s the hang dstance between CX and CY, CZ{} CZ s the th s the sze of the vector CZ eleent of the vector CZ and b Gene and Gene Expresson Confdence Assessent Then these genes found for each optal feature of respectve gene expresson data set and the gene expressons of that data set wll be used further to assess the gene and gene expresson confdence In order to ths, ntally the gene pars wll be defned such that each par contans two genes and each gene representng dfferent feature of the sae dataset Then we assess the assocatvty support of each gene par The assocatvty support can be descrbed as the rato of gene expressons contans that par aganst the total nuber of gene expressons n respectve dataset The process of assessng assocatvty support of each gene par s descrbed n followng secton (see sec 3 Assessng gene par correlaton Let P be the set and contans all possble unque gene pars fro respectve dataset D The possble unque gene pars wll found as follows: For each gene expresson e ( of respectve dataset D, fnd all possble unque pars of genes and d to P Then correlaton of each par{ p p P} as follows Let { g g p} and { gl gl p} be the two genes pared as{ p p P}, then the correlaton s( p of the par p s Assessng Gene and Gene Expresson Confdence In order to assess the confdence of genes and gene expressons of respectve gene expresson dataset D, a utual relaton graph wll be fored between gene expressons and genes of respectve D There wll be an edge between a gene and gene expresson f and only f the selected gene exsts n that gene expresson Then each edge between gene and gene expresson s weghted as follows G ( { g ( } g G Begn D l {( el g el (} Begn ( el s( p w 0 { g g el ( g g} Begn p { g, g } g wg ( + sp ( w g el ( wg ( el ( The weghts obtaned for edges between genes and gene expressons n utual graph are further used to assess the gene and gene expresson confdence towards respectve (coronary artery dsease, (unstable angna, (yocardal nfarcton and oral datasets Further we easure the each feature confdence towards gene expresson dataset follow G ( { g ( } G g Begn D v { { g, g} e ( } l v D //The rato of nuber of gene expressons contan both genesaganst total nuber of genes The correlaton of each par of genes found n gene expressons of each respectve gene expresson data set of coronary artery dsease, unstable angna, yocardal nfarcton and noral cases should be estated usng the process explored n sec 3 D g D c { wg ( e ( g D e (} D as 06 Global Journals Inc (US Year 06 3 Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I

5 MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and The Scope of Unstable Angna and Myocardal Infarcton Year 06 4 Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I //aggregatng the weght of gene g towards each gene expresson e ( of respectve dataset D and the sae s consdered as the respectve gene confdence towards dataset D Slarly each respectve gene expresson confdence towards gene expresson dataset D s easured as follows G ( D {( e D e (} Begn c { wg ( c e ( g D e (} e ( D g D //The su of product of each gene weght and the respectve gene confdence, such that the gene exsts n selectve gene expresson s the confdence of that gene expresson The confdence of genes and gene expressons of each respectve gene expresson data set of,, and salubrous cases should be estated usng the process explored n sec 3 c Defnng etaheurstcs to,, and Salubrous scope Further the confdence of gene expressons of gene expresson datasets D, D, D and D { ce( ( } D D e //Aggregate D ean of the respectve gene expressons confdence of coronary artery dsease gene expresson dataset D In order to dentfy the lower and upper bounds of, the ean absolute dstance of D s assessed as follows D ( ce( D D Then the lower and upper bounds of assessed as l // lower bound of u + // upper bound of Slarly etaheurstcs for (unstable angna, (Myocardal nfarcton and salubrous (healthy scope D { ce( ( } D D e //Aggregate D ean of the respectve gene expressons confdence of Unstable Angna gene expresson dataset D s The ean absolute dstance of D D s ( ce( D D Then the lower and upper bounds of assessed as l // lower bound of u + // upper bound of D s { ce( ( } D D e //Aggregate D ean of the respectve gene expressons confdence of yocardal Infarcton gene expresson dataset D The ean absolute dstance of D s D ( ce( D D Then the lower and upper bounds of assessed as l // lower bound of u + // upper bound of D { ce( ( } D D e //Aggregate ean of D the respectve gene expressons confdence of salubrous gene expresson dataset D The ean absolute dstance of D ( ce( D D D Then the lower and upper bounds of s assessed as l // lower bound of u + // upper bound of d Predctng the state of gene expresson The etaheurstcs devsed (see secton 33 wll be used further to assess the, and scope of a gven gene expresson e The confdence of gven gene expresson c G( D e G( D { cg wg ( g GD ( e g} s { cg ( ( } wg g GD // the aggregate of product of each gene confdence and weght of that exsts n GD ( and e, whch dvdes by the aggregate of confdence of all genes exsts n GD( s 06 Global Journals Inc (US

6 MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and The Scope of Unstable Angna and Myocardal Infarcton Further the confdence of e towards D, D and D assessed as : c { cg ( ( } w g g G e g G( e G( { cg ( ( } w g g G // the aggregate of product of each gene confdence and weght of that exsts n GD ( and e, whch dvdes by the aggregate of confdence of all genes exsts n GD ( c G( e G( { cg w( g g G( e g} { cg ( ( } w g g G // the aggregate of product of each gene confdence and weght of that exsts n GD ( and e, whch dvdes by the aggregate of confdence of all genes exsts n GD ( c G( { cg ( ( } wg g G e g e G( { cg ( ( } wg g G // the aggregate of product of each gene confdence and weght of that exsts n GD ( and e, whch dvdes by the aggregate of confdence of all genes exsts n GD ( Then these confdence values of gene expresson e wth respect to,, and wll be used to estate the gven expresson state s salubrous, prone to coronary artery dsease, Unstable Angna or Myocardal Infarcton accordng to the followng condtons ( c u ( c u ( c u e e e Coronary Artery Dsease Confred (hghly prone to ether of three dsease condtons ( c ( c l ( c l e e e Coronary Artery Dsease Confred (prone to and ether or both of the and ( ce l ( e If c l ( ce l ( ce < Then Prone to Coronary Artery Dsease ( ce < l ( e f c < l ( ce < l ( ce > Then Salubrous state Confred ( ce < ( e f c < ( ce < ( ce u Then Prone to Salubrous state IV Table : The etaheurstcs obtaned fro tranng data Tranng Set 834 (:4, :06,:07, : l u l u Experental Study The experental study was carred out on a set of gene expressons taen fro ultple benchar datasets [9] The nuber of gene expressons used are 4, whch are the cobnaton of coronary artery Dsease (86 expressons, Unstable Angna (75 expressons, Myocardal Infarcton (77 expressons and salubrous condton (76 expressons The gene expressons of respectve category are consdered as separate datasets labeled as D, D, D and D Each dataset D, D, D and D parttoned nto test and tranng sets The 75% of gene expressons of each dataset are consdered as tranng set and rest 5% of gene expressons consdered as test set The etaheurstcs obtaned fro the gven tranng set were explored n table Year 06 5 Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I 06 Global Journals Inc (US

7 MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and The Scope of Unstable Angna and Myocardal Infarcton l u l u Table : The predcton statstcs of the SDS Year 06 6 Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I True Postves True egatves False Postves False egatve Test Set, and gene expresson Predcton Value (postve predcton value, PPV Salubrous gene expresson Predcton Value (egatve Predcton value, PV Detecton Accuracy AD, and gene expresson predcton Rate (True Postve Rate Salubrous gene expresson Predcton rate (True egatve Rate The 80 (: 7, : 69, : 70, : 69 gene expressons were used to assess the predcton accuracy of the proposed MAGED The MAGED assessed the gven nput gene expressons such that 97gene expressons are true postves (the detecton of, and gene expressons are true, 5gene expressons are false postve (falsely detected as, or, 54gene expressons are true negatves (detectng gene expressons as salubrous s true and 4gene expressons are false negatve (detectng gene expressons as salubrous s false Hence the, or gene expresson predcton value (also nown as precson or postve predcton value s 093, Salubrous Gene Fgure : The predcton statstcs observed for MAGED 80 (:7, :69,:70, : Expresson predcton value s 079, the, and gene expresson detecton rate (also nown as senstvty s 093, the salubrous gene expresson detecton rate (also nown as specfcty s 078 and the overall success rate (also nown as accuracy, whch s the rato between true predcton of all types of gene expressons and all gven nuber of gene expressons s 090 These statstcs ndcatng that the MAGED s fnd to sgnfcant to dentfy the, and prone gene expressons wth success percentage of 93% (snce senstvty s 093, but the detecton of salubrous cases, the success rate s 78% (snce specfcty s 078 The coputer ed edcal dagnoss should 06 Global Journals Inc (US

8 MAGED: Metaheurstc Approach on Gene Expresson Data: Predctng the Coronary Artery Dsease and The Scope of Unstable Angna and Myocardal Infarcton be ore robust to delver hgh senstvty at the cost of specfcty Hence the Model MAGED s scalable and robust to predct the, and prone gene expressonsthe predcton statstcs observed fro the experental study of the MAGED are vsualzed n fg V Concluson Ths paper ntroduced a learnng odel that devce heurstcs to scale the gven patent record s dsease prone or noral The proposed learnng odel delvers two heurstcs called Scale to Dseased health Scope and Scale to oral Health Scope In contrast to the exstng bencharng odels, these heurstcs are further used as scales to assess the gven patent record s dsease prone or noral The edcal records labeled as dseased and noral are used to devce the heurstcs sdhs and snhs respectvely In order to ths all unque values of all the attrbutes are consdered as features, and then the nfluence weght of these features towards ther respectve datasets The nfluence weghts further wll be used to assess the nfluence weght of the each record n dataset Fro these nfluence weghts of the records of respectve dataset wll be used to assess the proposed heurstcs The experental results are optstc and concludng the predcton accuracy and robustness Ths wor can be extended to dentfy the pact of feature correlaton towards nzng the process and coputatonal coplexty of the learnng process References Références Referencas Mozaffaran D, Benan EJ, Go AS, Arnett DK, Blaha MJ, Cushan M, et al Heart dsease and stroe statstcs 05 update: a report fro the Aercan Heart Assocaton Crc 05; 3:9 3 Mends, S, Thygesen, K, Kuulasaa, K, Gapaol, S, Mähönen, M, Blacett, K, & Lsheng, L (0 World Health Organzaton defnton of yocardal nfarcton: revson Internatonal ournal of epdeology,40(, Thygesen K, Alpert JS, Whte HD Unversal defnton of yocardal nfarcton Europ Heart J 007; 8: Eggers KM, Lnd L, Venge P, Lndahl B Wll the unversal defnton of yocardal nfarcton crtera result n an over dagnoss of yocardal nfarcton? The Aer J of Card 009; 03: Wang Z, Luo X, Lu Y, Yang B RAs at the heart of the atter J of Mol Med 008; 86: de Planell-Saguer M, Rodco MC Detecton ethods for croras n clnc practce Cln Boche 03; 46: do: 006/clnbo che03007 PD: Melander O, ewton-cheh C, Algren P, Hedbl B, Berglund G, Engströ G, et al ovel and conventonal boarers for predcton of ncdent cardovascular events n the county The J of the Aer Med Assoc 009; 30: Shah T, Casas JP, Cooper JA, Tzoula I, Sofat R, McCorac V, et al Crtcal apprasal of CRP easureent for the predcton of coronary heart dsease events: new data and systeatc revew of 3 prospectve cohorts Inter J of Epd 009; 38: Wlson PWF, Pencna M, Jacques P, Selhub J, D Agostno R, O Donnell CJ C-reactve proten and reclassfcaton of cardovascular rs n the Frangha Heart Study Crc: Card Qual and Outc 008; : Pedrotty DM, Morley MP, Cappola TP Transcrptoc boarers of cardovascular dsease Prog n Card Ds 0; 55: Rand AM, Bguzz E, Falcan F, Merln P, Blaeore S, Braucc E, et al Identfcaton of dfferentally expressed genes n coronary atherosclerotc plaques fro patents wth stable or unstable angna by cda array analyss J of Thro and Hae 003; : Archac S, Anghelou G, Tan XL, Tan FL, DPaola, Shen GQ, et al Identfcaton of new genes dfferentally expressed n coronary artery dsease by expresson proflng Phys Geno 003; 5: Elashoff MR, Wngrove JA, Benee P, Danels SE, Tngley WG, Rosenberg S, et al Developent of a blood-based gene expresson algorth for assessent of obstructve coronary artery dsease n nondabetc patents BMC Med Geno 0; 4: Kttleson MM, Ye SQ, Irzarry RA, Mnhas KM, Edness G, Conte JV, et al Identfcaton of a gene expresson profle that dfferentates between schec and nonschec cardoyopathy Crc 004; 0: Kttleson MM, Mnhas KM, Irzarry RA, Ye SQ, Edness G, Breton E, et al Gene expresson analyss of schec and nonschec cardoyopathy: shared and dstnct genes n the developent of heart falure Phys Geno 005; : Mn KD, Asaura M, Lao Y, aaaru K, Oaza H, Taahash T, et al Identfcaton of genes related to heart falure usng global gene expresson proflng of huan falng yocardu Boch and Bophy Res Co 00; 393: Suresh R, L X, Chrac A, Goel K, Terzc A, Perez- Terzc C, et al Transcrptoe fro crculatng cells suggests dysregulated pathways assocated wth long-ter recurrent events followng frst-te yocardal nfarcton J of Mol and Cell Card 04; 74: 3 8 Lew CC, Ma J, Tang HC, Zheng R, Depsey AA The perpheral blood transcrptoe dynacally reflects syste wde bology: a potental dagnostc tool The J of Lab and Cln Med 006; 47: 6 [3] 9 Year 06 7 Global Journal of Coputer Scence and Technology ( Volue XVI Issue IV Verson I 06 Global Journals Inc (US

Modeling Multi Layer Feed-forward Neural. Network Model on the Influence of Hypertension. and Diabetes Mellitus on Family History of

Modeling Multi Layer Feed-forward Neural. Network Model on the Influence of Hypertension. and Diabetes Mellitus on Family History of Appled Mathematcal Scences, Vol. 7, 2013, no. 41, 2047-2053 HIKARI Ltd, www.m-hkar.com Modelng Mult Layer Feed-forward Neural Network Model on the Influence of Hypertenson and Dabetes Melltus on Famly

More information

Nonlinear Modeling Method Based on RBF Neural Network Trained by AFSA with Adaptive Adjustment

Nonlinear Modeling Method Based on RBF Neural Network Trained by AFSA with Adaptive Adjustment Advances n Engneerng Research (AER), volue 48 3rd Workshop on Advanced Research and Technology n Industry Applcatons (WARTIA 27) Nonlnear Modelng Method Based on RBF Neural Network Traned by AFSA wth Adaptve

More information

Gene Selection Based on Mutual Information for the Classification of Multi-class Cancer

Gene Selection Based on Mutual Information for the Classification of Multi-class Cancer Gene Selecton Based on Mutual Informaton for the Classfcaton of Mult-class Cancer Sheng-Bo Guo,, Mchael R. Lyu 3, and Tat-Mng Lok 4 Department of Automaton, Unversty of Scence and Technology of Chna, Hefe,

More information

Prediction of Total Pressure Drop in Stenotic Coronary Arteries with Their Geometric Parameters

Prediction of Total Pressure Drop in Stenotic Coronary Arteries with Their Geometric Parameters Tenth Internatonal Conference on Computatonal Flud Dynamcs (ICCFD10), Barcelona, Span, July 9-13, 2018 ICCFD10-227 Predcton of Total Pressure Drop n Stenotc Coronary Arteres wth Ther Geometrc Parameters

More information

Parameter Estimates of a Random Regression Test Day Model for First Three Lactation Somatic Cell Scores

Parameter Estimates of a Random Regression Test Day Model for First Three Lactation Somatic Cell Scores Parameter Estmates of a Random Regresson Test Day Model for Frst Three actaton Somatc Cell Scores Z. u, F. Renhardt and R. Reents Unted Datasystems for Anmal Producton (VIT), Hedeweg 1, D-27280 Verden,

More information

An Approach to Discover Dependencies between Service Operations*

An Approach to Discover Dependencies between Service Operations* 36 JOURNAL OF SOFTWARE VOL. 3 NO. 9 DECEMBER 2008 An Approach to Dscover Dependences between Servce Operatons* Shuyng Yan Research Center for Grd and Servce Computng Insttute of Computng Technology Chnese

More information

Strategies for the Early Diagnosis of Acute Myocardial Infarction Using Biochemical Markers

Strategies for the Early Diagnosis of Acute Myocardial Infarction Using Biochemical Markers Clncal Chemstry / EARLY DIAGNOSIS OF ACUTE MYOCARDIAL INFARCTION USING IOCHEMICAL MARKERS Strateges for the Early Dagnoss of Acute Myocardal Infarcton Usng ochemcal Markers Martna Zannotto, Leopoldo Celegon,

More information

Using the Perpendicular Distance to the Nearest Fracture as a Proxy for Conventional Fracture Spacing Measures

Using the Perpendicular Distance to the Nearest Fracture as a Proxy for Conventional Fracture Spacing Measures Usng the Perpendcular Dstance to the Nearest Fracture as a Proxy for Conventonal Fracture Spacng Measures Erc B. Nven and Clayton V. Deutsch Dscrete fracture network smulaton ams to reproduce dstrbutons

More information

Study and Comparison of Various Techniques of Image Edge Detection

Study and Comparison of Various Techniques of Image Edge Detection Gureet Sngh et al Int. Journal of Engneerng Research Applcatons RESEARCH ARTICLE OPEN ACCESS Study Comparson of Varous Technques of Image Edge Detecton Gureet Sngh*, Er. Harnder sngh** *(Department of

More information

THE NATURAL HISTORY AND THE EFFECT OF PIVMECILLINAM IN LOWER URINARY TRACT INFECTION.

THE NATURAL HISTORY AND THE EFFECT OF PIVMECILLINAM IN LOWER URINARY TRACT INFECTION. MET9401 SE 10May 2000 Page 13 of 154 2 SYNOPSS MET9401 SE THE NATURAL HSTORY AND THE EFFECT OF PVMECLLNAM N LOWER URNARY TRACT NFECTON. L A study of the natural hstory and the treatment effect wth pvmecllnam

More information

International Journal of Emerging Technologies in Computational and Applied Sciences (IJETCAS)

International Journal of Emerging Technologies in Computational and Applied Sciences (IJETCAS) Internatonal Assocaton of Scentfc Innovaton and Research (IASIR (An Assocaton Unfyng the Scences, Engneerng, and Appled Research Internatonal Journal of Emergng Technologes n Computatonal and Appled Scences

More information

Applying Data Mining Technology on the Using of Traditional Chinese Medicine in Taiwan

Applying Data Mining Technology on the Using of Traditional Chinese Medicine in Taiwan Internatonal Journal of Coputer and Inforaton Technology (ISSN: 79 0764) Applyng Data Mnng Technology on the Usng of Tradtonal Chnese Medcne n Tawan Y-Horng La Departent of Health Care Adnstraton Orental

More information

Survival Rate of Patients of Ovarian Cancer: Rough Set Approach

Survival Rate of Patients of Ovarian Cancer: Rough Set Approach Internatonal OEN ACCESS Journal Of Modern Engneerng esearch (IJME) Survval ate of atents of Ovaran Cancer: ough Set Approach Kamn Agrawal 1, ragat Jan 1 Department of Appled Mathematcs, IET, Indore, Inda

More information

Sleep Heart Rate Variability Analysis and k-nearest Neighbours Classification of Primary Insomnia

Sleep Heart Rate Variability Analysis and k-nearest Neighbours Classification of Primary Insomnia INTERNATIONAL JOURNAL OF INTEGRATED ENGINEERING VOL. 10 NO. 7 (2018) 66 75 Unverst Tun Hussen Onn Malaysa Publsher s Offce IJIE Journal hoepage: http://penerbt.uth.edu.y/ojs/ndex.php/je The Internatonal

More information

Reconstruction of gene regulatory network of colon cancer using information theoretic approach

Reconstruction of gene regulatory network of colon cancer using information theoretic approach Reconstructon of gene regulatory network of colon cancer usng nformaton theoretc approach Khald Raza #1, Rafat Parveen * # Department of Computer Scence Jama Mlla Islama (Central Unverst, New Delh-11005,

More information

Modeling the Survival of Retrospective Clinical Data from Prostate Cancer Patients in Komfo Anokye Teaching Hospital, Ghana

Modeling the Survival of Retrospective Clinical Data from Prostate Cancer Patients in Komfo Anokye Teaching Hospital, Ghana Internatonal Journal of Appled Scence and Technology Vol. 5, No. 6; December 2015 Modelng the Survval of Retrospectve Clncal Data from Prostate Cancer Patents n Komfo Anokye Teachng Hosptal, Ghana Asedu-Addo,

More information

A MIXTURE OF EXPERTS FOR CATARACT DIAGNOSIS IN HOSPITAL SCREENING DATA

A MIXTURE OF EXPERTS FOR CATARACT DIAGNOSIS IN HOSPITAL SCREENING DATA Journal of Theoretcal and Appled Informaton Technology 2005 ongong JATIT & LLS ISSN: 1992-8645 www.jatt.org E-ISSN: 1817-3195 A MIXTURE OF EXPERTS FOR CATARACT DIAGNOSIS IN HOSPITAL SCREENING DATA 1 SUNGMIN

More information

Physical Model for the Evolution of the Genetic Code

Physical Model for the Evolution of the Genetic Code Physcal Model for the Evoluton of the Genetc Code Tatsuro Yamashta Osamu Narkyo Department of Physcs, Kyushu Unversty, Fukuoka 8-856, Japan Abstract We propose a physcal model to descrbe the mechansms

More information

IMPROVING THE EFFICIENCY OF BIOMARKER IDENTIFICATION USING BIOLOGICAL KNOWLEDGE

IMPROVING THE EFFICIENCY OF BIOMARKER IDENTIFICATION USING BIOLOGICAL KNOWLEDGE IMPROVING THE EFFICIENCY OF BIOMARKER IDENTIFICATION USING BIOLOGICAL KNOWLEDGE JOHN H. PHAN The Wallace H. Coulter Department of Bomedcal Engneerng, Georga Insttute of Technology, 313 Ferst Drve Atlanta,

More information

310 Int'l Conf. Par. and Dist. Proc. Tech. and Appl. PDPTA'16

310 Int'l Conf. Par. and Dist. Proc. Tech. and Appl. PDPTA'16 310 Int'l Conf. Par. and Dst. Proc. Tech. and Appl. PDPTA'16 Akra Sasatan and Hrosh Ish Graduate School of Informaton and Telecommuncaton Engneerng, Toka Unversty, Mnato, Tokyo, Japan Abstract The end-to-end

More information

Were the babies switched? The Genetics of Blood Types i

Were the babies switched? The Genetics of Blood Types i Were the babes swtched? The Genetcs of Blood Types Two couples had babes on the same day n the same hosptal. Dense and Earnest had a grl, Tonja. Danelle and Mchael had twns, a boy, Mchael, Jr., and a grl,

More information

Copy Number Variation Methods and Data

Copy Number Variation Methods and Data Copy Number Varaton Methods and Data Copy number varaton (CNV) Reference Sequence ACCTGCAATGAT TAAGCCCGGG TTGCAACGTTAGGCA Populaton ACCTGCAATGAT TAAGCCCGGG TTGCAACGTTAGGCA ACCTGCAATGAT TTGCAACGTTAGGCA

More information

Joint Modelling Approaches in diabetes research. Francisco Gude Clinical Epidemiology Unit, Hospital Clínico Universitario de Santiago

Joint Modelling Approaches in diabetes research. Francisco Gude Clinical Epidemiology Unit, Hospital Clínico Universitario de Santiago Jont Modellng Approaches n dabetes research Clncal Epdemology Unt, Hosptal Clínco Unverstaro de Santago Outlne 1 Dabetes 2 Our research 3 Some applcatons Dabetes melltus Is a serous lfe-long health condton

More information

AN ENHANCED GAGS BASED MTSVSL LEARNING TECHNIQUE FOR CANCER MOLECULAR PATTERN PREDICTION OF CANCER CLASSIFICATION

AN ENHANCED GAGS BASED MTSVSL LEARNING TECHNIQUE FOR CANCER MOLECULAR PATTERN PREDICTION OF CANCER CLASSIFICATION www.arpapress.com/volumes/vol8issue2/ijrras_8_2_02.pdf AN ENHANCED GAGS BASED MTSVSL LEARNING TECHNIQUE FOR CANCER MOLECULAR PATTERN PREDICTION OF CANCER CLASSIFICATION I. Jule 1 & E. Krubakaran 2 1 Department

More information

AlereTM. i Influenza A & B. Enter. Molecular results in less than 15 minutes

AlereTM. i Influenza A & B. Enter. Molecular results in less than 15 minutes Molecular results n less than 15 mnutes Enter Transformng patent management sothermal amplfcaton technology gvng you molecular results, faster than ever before Improvng patent care Gvng you the confdence

More information

Association between cholesterol and cardiac parameters.

Association between cholesterol and cardiac parameters. Short communcaton http://www.alledacademes.org/cholesterol-and-heart-dsease/ Assocaton between cholesterol and cardac parameters. Rabndra Nath Das* Department of Statstcs, The Unversty of Burdwan, Burdwan,

More information

Statistically Weighted Voting Analysis of Microarrays for Molecular Pattern Selection and Discovery Cancer Genotypes

Statistically Weighted Voting Analysis of Microarrays for Molecular Pattern Selection and Discovery Cancer Genotypes IJCSNS Internatonal Journal of Computer Scence and Network Securty, VOL.6 No.2, December 26 73 Statstcally Weghted Votng Analyss of Mcroarrays for Molecular Pattern Selecton and Dscovery Cancer Genotypes

More information

A Computer-aided System for Discriminating Normal from Cancerous Regions in IHC Liver Cancer Tissue Images Using K-means Clustering*

A Computer-aided System for Discriminating Normal from Cancerous Regions in IHC Liver Cancer Tissue Images Using K-means Clustering* A Computer-aded System for Dscrmnatng Normal from Cancerous Regons n IHC Lver Cancer Tssue Images Usng K-means Clusterng* R. M. CHEN 1, Y. J. WU, S. R. JHUANG, M. H. HSIEH, C. L. KUO, Y. L. MA Department

More information

*VALLIAPPAN Raman 1, PUTRA Sumari 2 and MANDAVA Rajeswari 3. George town, Penang 11800, Malaysia. George town, Penang 11800, Malaysia

*VALLIAPPAN Raman 1, PUTRA Sumari 2 and MANDAVA Rajeswari 3. George town, Penang 11800, Malaysia. George town, Penang 11800, Malaysia 38 A Theoretcal Methodology and Prototype Implementaton for Detecton Segmentaton Classfcaton of Dgtal Mammogram Tumor by Machne Learnng and Problem Solvng *VALLIAPPA Raman, PUTRA Sumar 2 and MADAVA Rajeswar

More information

Journal of Engineering Science and Technology Review 11 (2) (2018) Research Article

Journal of Engineering Science and Technology Review 11 (2) (2018) Research Article Jestr Journal of Engneerng Scence and Technology Revew () (08) 5 - Research Artcle Prognoss Evaluaton of Ovaran Granulosa Cell Tumor Based on Co-forest ntellgence Model Xn Lao Xn Zheng Juan Zou Mn Feng

More information

INTEGRATIVE NETWORK ANALYSIS TO IDENTIFY ABERRANT PATHWAY NETWORKS IN OVARIAN CANCER

INTEGRATIVE NETWORK ANALYSIS TO IDENTIFY ABERRANT PATHWAY NETWORKS IN OVARIAN CANCER INTEGRATIVE NETWORK ANALYSIS TO IDENTIFY ABERRANT PATHWAY NETWORKS IN OVARIAN CANCER LI CHEN 1,2, JIANHUA XUAN 1,*, JINGHUA GU 1, YUE WANG 1, ZHEN ZHANG 2, TIAN LI WANG 2, IE MING SHIH 2 1The Bradley Department

More information

Introduction ORIGINAL RESEARCH

Introduction ORIGINAL RESEARCH ORIGINAL RESEARCH Assessng the Statstcal Sgnfcance of the Acheved Classfcaton Error of Classfers Constructed usng Serum Peptde Profles, and a Prescrpton for Random Samplng Repeated Studes for Massve Hgh-Throughput

More information

Optimal Planning of Charging Station for Phased Electric Vehicle *

Optimal Planning of Charging Station for Phased Electric Vehicle * Energy and Power Engneerng, 2013, 5, 1393-1397 do:10.4236/epe.2013.54b264 Publshed Onlne July 2013 (http://www.scrp.org/ournal/epe) Optmal Plannng of Chargng Staton for Phased Electrc Vehcle * Yang Gao,

More information

Dr.S.Sumathi 1, Mrs.V.Agalya 2 Mahendra Engineering College, Mahendhirapuri, Mallasamudram

Dr.S.Sumathi 1, Mrs.V.Agalya 2 Mahendra Engineering College, Mahendhirapuri, Mallasamudram Detecton Of Myocardal Ischema In ECG Sgnals Usng Support Vector Machne Dr.S.Sumath 1, Mrs.V.Agalya Mahendra Engneerng College, Mahendhrapur, Mallasamudram Abstract--Ths paper presents an ntellectual dagnoss

More information

KOUJI KAJINAMI, MD,*t HIROYASU SEKI, MD,t NOBORU TAKEKOSHI, MD,t HIROSHI MABUCHI, MD* Kanazawa, Japan

KOUJI KAJINAMI, MD,*t HIROYASU SEKI, MD,t NOBORU TAKEKOSHI, MD,t HIROSHI MABUCHI, MD* Kanazawa, Japan JACC Vol. 26, No. 5 209 November I, 995:209-2 Nonnvasve Predcton of Coronary Atheroscleross by Quantfcaton of Coronary Artery Calcfcaton Usng Electron Beam Computed Tomography: Comparson Wth Electrocardographc

More information

FAST DETECTION OF MASSES IN MAMMOGRAMS WITH DIFFICULT CASE EXCLUSION

FAST DETECTION OF MASSES IN MAMMOGRAMS WITH DIFFICULT CASE EXCLUSION computng@tanet.edu.te.ua www.tanet.edu.te.ua/computng ISSN 727-6209 Internatonal Scentfc Journal of Computng FAST DETECTION OF MASSES IN MAMMOGRAMS WITH DIFFICULT CASE EXCLUSION Gábor Takács ), Béla Patak

More information

A Belief Rule-Based (BRB) Decision Support System for Assessing Clinical Asthma Suspicion

A Belief Rule-Based (BRB) Decision Support System for Assessing Clinical Asthma Suspicion A Belef Rule-Based (BRB) Decson Support System for Assessng Clncal Asthma Suspcon Mohammad Shahadat Hossan a, Md. Emran Hossan b, Md. Safuddn Khald c, Mohammad A. Haque d a, b Department of Computer Scence

More information

Feature Selection for Predicting Tumor Metastases in Microarray Experiments using Paired Design

Feature Selection for Predicting Tumor Metastases in Microarray Experiments using Paired Design Feature Selecton for Predctng Tumor Metastases n Mcroarray Experments usng Pared Desgn Qhua Tan 1,2, Mads Thomassen 1 and Torben A. Kruse 1 ORIGINAL RESEARCH 1 Department of Bochemstry, Pharmacology and

More information

Biomarker Selection from Gene Expression Data for Tumour Categorization Using Bat Algorithm

Biomarker Selection from Gene Expression Data for Tumour Categorization Using Bat Algorithm Receved: March 20, 2017 401 Bomarker Selecton from Gene Expresson Data for Tumour Categorzaton Usng Bat Algorthm Gunavath Chellamuthu 1 *, Premalatha Kandasamy 2, Svasubramanan Kanagaraj 3 1 School of

More information

Association Analysis and Distribution of Chronic Gastritis Syndromes Based on Associated Density

Association Analysis and Distribution of Chronic Gastritis Syndromes Based on Associated Density 200 IEEE Internatonal Conference on Bonformatcs and Bomedcne Workshops Assocaton Analyss and Dstrbuton of Chronc Gastrts s Based on Assocated Densty Guo-Png u Y-Qn Wang Fu-Feng Ha-Xa Yan Jng-Jng Fu Je

More information

INITIAL ANALYSIS OF AWS-OBSERVED TEMPERATURE

INITIAL ANALYSIS OF AWS-OBSERVED TEMPERATURE INITIAL ANALYSIS OF AWS-OBSERVED TEMPERATURE Wang Yng, Lu Xaonng, Ren Zhhua, Natonal Meteorologcal Informaton Center, Bejng, Chna Tel.:+86 684755, E-mal:cdcsjk@cma.gov.cn Abstract From, n Chna meteorologcal

More information

4.2 Scheduling to Minimize Maximum Lateness

4.2 Scheduling to Minimize Maximum Lateness 4. Schedulng to Mnmze Maxmum Lateness Schedulng to Mnmzng Maxmum Lateness Mnmzng lateness problem. Sngle resource processes one ob at a tme. Job requres t unts of processng tme and s due at tme d. If starts

More information

A Linear Regression Model to Detect User Emotion for Touch Input Interactive Systems

A Linear Regression Model to Detect User Emotion for Touch Input Interactive Systems 2015 Internatonal Conference on Affectve Computng and Intellgent Interacton (ACII) A Lnear Regresson Model to Detect User Emoton for Touch Input Interactve Systems Samt Bhattacharya Dept of Computer Scence

More information

Economic crisis and follow-up of the conditions that define metabolic syndrome in a cohort of Catalonia,

Economic crisis and follow-up of the conditions that define metabolic syndrome in a cohort of Catalonia, Economc crss and follow-up of the condtons that defne metabolc syndrome n a cohort of Catalona, 2005-2012 Laa Maynou 1,2,3, Joan Gl 4, Gabrel Coll-de-Tuero 5,2, Ton Mora 6, Carme Saurna 1,2, Anton Scras

More information

(From the Gastroenterology Division, Cornell University Medical College, New York 10021)

(From the Gastroenterology Division, Cornell University Medical College, New York 10021) ROLE OF HEPATIC ANION-BINDING PROTEIN IN BROMSULPHTHALEIN CONJUGATION* BY N. KAPLOWITZ, I. W. PERC -ROBB,~ ANn N. B. JAVITT (From the Gastroenterology Dvson, Cornell Unversty Medcal College, New York 10021)

More information

Research Article Statistical Analysis of Haralick Texture Features to Discriminate Lung Abnormalities

Research Article Statistical Analysis of Haralick Texture Features to Discriminate Lung Abnormalities Hndaw Publshng Corporaton Internatonal Journal of Bomedcal Imagng Volume 2015, Artcle ID 267807, 7 pages http://dx.do.org/10.1155/2015/267807 Research Artcle Statstcal Analyss of Haralck Texture Features

More information

Lymphoma Cancer Classification Using Genetic Programming with SNR Features

Lymphoma Cancer Classification Using Genetic Programming with SNR Features Lymphoma Cancer Classfcaton Usng Genetc Programmng wth SNR Features Jn-Hyuk Hong and Sung-Bae Cho Dept. of Computer Scence, Yonse Unversty, 134 Shnchon-dong, Sudaemoon-ku, Seoul 120-749, Korea hjnh@candy.yonse.ac.kr,

More information

Prediction of Human Disease-Related Gene Clusters by Clustering Analysis

Prediction of Human Disease-Related Gene Clusters by Clustering Analysis Int. J. Bol. Sc. 2011, 7 61 Research Paper Internatonal Journal of Bologcal Scences 2011; 7(1):61-73 Ivysprng Internatonal Publsher. All rghts reserved Predcton of Human Dsease-Related Gene Clusters by

More information

Insights in Genetics and Genomics

Insights in Genetics and Genomics Insghts n Genetcs and Genomcs Research Artcle Open Access New Score Tests for Equalty of Varances n the Applcaton of DNA Methylaton Data Analyss [Verson ] Welang Qu Xuan L Jarrett Morrow Dawn L DeMeo Scott

More information

Available online at ScienceDirect. Procedia Computer Science 46 (2015 )

Available online at   ScienceDirect. Procedia Computer Science 46 (2015 ) Avalable onlne at www.scencedrect.com ScenceDrect Proceda Computer Scence 46 (215 ) 1762 1769 Internatonal Conference on Informaton and Communcaton Technologes (ICICT 214) Automatc Characterzaton of Bengn

More information

THIS IS AN OFFICIAL NH DHHS HEALTH ALERT

THIS IS AN OFFICIAL NH DHHS HEALTH ALERT THIS IS AN OFFICIAL NH DHHS HEALTH ALERT Dstrbuted by the NH Health Alert Network Health.Alert@dhhs.nh.gov August 26, 2016 1430 EDT (2:30 PM EDT) NH-HAN 20160826 Recommendatons for Accurate Dagnoss of

More information

Normal variation in the length of the luteal phase of the menstrual cycle: identification of the short luteal phase

Normal variation in the length of the luteal phase of the menstrual cycle: identification of the short luteal phase Brtsh Journal of Obstetrcs and Gvnaecologjl July 1984, Vol. 9 1, pp. 685-689 Normal varaton n the length of the luteal phase of the menstrual cycle: dentfcaton of the short luteal phase ELIZABETH A. LENTON,

More information

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO Zuo et al. BMC Bonformatcs (2017) 18:99 DOI 10.1186/s12859-017-1515-1 METHODOLOGY ARTICLE Open Access Incorporatng pror bologcal knowledge for network-based dfferental gene expresson analyss usng dfferentally

More information

Leberco*Celsis Testing

Leberco*Celsis Testing n km Leberco*Celss Testng 23 Hawthorne Street Roselle Park, NJ 724-26 98.245.933 / 8.523.LABS Fax 98.245.6253 Nov. 5, 996 SUBMTTED TO: ACTS Testng Labs Buffalo, NY Patty Dck ASSAY NUMBER: 96234 DATE RECEVED:

More information

Clinging to Beliefs: A Constraint-satisfaction Model

Clinging to Beliefs: A Constraint-satisfaction Model Clngng to Belefs: A Constrant-satsfacton Model Thomas R. Shultz (shultz@psych.mcgll.ca) Department of Psychology; McGll Unversty Montreal, QC H3C 1B1 Canada Jacques A. Katz (jakatz@cnbc.cmu.edu) Department

More information

Improvement of Automatic Hemorrhages Detection Methods using Brightness Correction on Fundus Images

Improvement of Automatic Hemorrhages Detection Methods using Brightness Correction on Fundus Images Improvement of Automatc Hemorrhages Detecton Methods usng Brghtness Correcton on Fundus Images Yuj Hatanaka *a, Toshak Nakagawa *b, Yoshnor Hayash *c, Masakatsu Kakogawa *c, Akra Sawada *d, Kazuhde Kawase

More information

A SIMULATION STUDY OF MECHANISM OF POSTFLIGHT ORTHOSTATIC INTOLERANCE

A SIMULATION STUDY OF MECHANISM OF POSTFLIGHT ORTHOSTATIC INTOLERANCE Proceedngs 3rd Annual Conference IEEE/EMBS Oct.5-8, 001, Istanbul, TURKEY A SIMULATION STUDY OF MECHANISM OF POSTFLIGHT ORTHOSTATIC INTOLERANCE W. Y HAO 1, J. BAI 1, W. Y. ZHANG, X. Y. WU 3 L. F. ZHANG

More information

AUTOMATED DETECTION OF HARD EXUDATES IN FUNDUS IMAGES USING IMPROVED OTSU THRESHOLDING AND SVM

AUTOMATED DETECTION OF HARD EXUDATES IN FUNDUS IMAGES USING IMPROVED OTSU THRESHOLDING AND SVM AUTOMATED DETECTION OF HARD EXUDATES IN FUNDUS IMAGES USING IMPROVED OTSU THRESHOLDING AND SVM Wewe Gao 1 and Jng Zuo 2 1 College of Mechancal Engneerng, Shangha Unversty of Engneerng Scence, Shangha,

More information

Evaluation of the generalized gamma as a tool for treatment planning optimization

Evaluation of the generalized gamma as a tool for treatment planning optimization Internatonal Journal of Cancer Therapy and Oncology www.jcto.org Evaluaton of the generalzed gamma as a tool for treatment plannng optmzaton Emmanoul I Petrou 1,, Ganesh Narayanasamy 3, Eleftheros Lavdas

More information

Figure S1. 1g tumors (weeks) ikras. Lean Obese. Lean Obese 25 KPC

Figure S1. 1g tumors (weeks) ikras. Lean Obese. Lean Obese 25 KPC Fgure S 5 Tme to develop g tumors (weeks) 5 5 Tme to develop g tumors (weeks) 5 5 KRS KPC Fgure S. Effect of obesty on tumor ntaton. Tme to develop tumors of about g n KPC and KRS mce fed low or hgh-fat

More information

Proceedings of the 6th WSEAS Int. Conf. on EVOLUTIONARY COMPUTING, Lisbon, Portugal, June 16-18, 2005 (pp )

Proceedings of the 6th WSEAS Int. Conf. on EVOLUTIONARY COMPUTING, Lisbon, Portugal, June 16-18, 2005 (pp ) Proceedngs of the 6th WSEAS Int. Conf. on EVOLUTIONARY COMPUTING, Lsbon, Portugal, June 6-8, 2005 (pp285-20) Novel Intellgent Edge Detector for Sonographcal Images Al Rafee *, Mohammad Hasan Morad **,

More information

NHS Outcomes Framework

NHS Outcomes Framework NHS Outcomes Framework Doman 1 Preventng people from dyng prematurely Indcator Specfcatons Verson: 1.21 Date: May 2018 Author: Clncal Indcators Team NHS Outcomes Framework: Doman 1 Preventng people from

More information

Prognosis and Diagnosis of Breast Cancer Using Interactive Dashboard Through Big Data Analytics

Prognosis and Diagnosis of Breast Cancer Using Interactive Dashboard Through Big Data Analytics Prognoss and Dagnoss of Breast Cancer Usng Interactve Dashboard Through Bg Data Analytcs Gomath N, and Sandhya P 2 * Department of Computer Scence and Engneerng, Veltech Dr. RR & Dr. SR Unversty, Avad,

More information

CONSTRUCTION OF STOCHASTIC MODEL FOR TIME TO DENGUE VIRUS TRANSMISSION WITH EXPONENTIAL DISTRIBUTION

CONSTRUCTION OF STOCHASTIC MODEL FOR TIME TO DENGUE VIRUS TRANSMISSION WITH EXPONENTIAL DISTRIBUTION Internatonal Journal of Pure and Appled Mathematcal Scences. ISSN 97-988 Volume, Number (7), pp. 3- Research Inda Publcatons http://www.rpublcaton.com ONSTRUTION OF STOHASTI MODEL FOR TIME TO DENGUE VIRUS

More information

Detection of Lung Cancer at Early Stage using Neural Network Techniques for Preventing Health Care

Detection of Lung Cancer at Early Stage using Neural Network Techniques for Preventing Health Care IJSRD - Internatonal Journal for Scentfc Research & Development Vol. 3, Issue 4, 15 ISSN (onlne): 31-613 Detecton of Lung Cancer at Early Stage usng Neural Network echnques for Preventng Health Care Megha

More information

This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and

This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and Ths artcle appeared n a journal publshed by Elsever. The attached copy s furnshed to the author for nternal non-commercal research and educaton use, ncludng for nstructon at the authors nsttuton and sharng

More information

Jurnal Teknologi USING ASSOCIATION RULES TO STUDY PATTERNS OF MEDICINE USE IN THAI ADULT DEPRESSED PATIENTS. Full Paper

Jurnal Teknologi USING ASSOCIATION RULES TO STUDY PATTERNS OF MEDICINE USE IN THAI ADULT DEPRESSED PATIENTS. Full Paper Jurnal Teknolog USING ASSOCIATION RULES TO STUDY PATTERNS OF MEDICINE USE IN THAI ADULT DEPRESSED PATIENTS Chumpoonuch Sukontavaree, Verayuth Lertnattee * Faculty of Pharmacy, Slpakorn Unversty, Nakhon

More information

Journal of Engineering Science and Technology Review 11 (2) (2018) Research Article

Journal of Engineering Science and Technology Review 11 (2) (2018) Research Article Jestr Journal of Engneerng Scence and Technology Revew 11 (2) (2018) 8-12 Research Artcle Detecton Lung Cancer Usng Gray Level Co-Occurrence Matrx (GLCM) and Back Propagaton Neural Network Classfcaton

More information

Using Past Queries for Resource Selection in Distributed Information Retrieval

Using Past Queries for Resource Selection in Distributed Information Retrieval Purdue Unversty Purdue e-pubs Department of Computer Scence Techncal Reports Department of Computer Scence 2011 Usng Past Queres for Resource Selecton n Dstrbuted Informaton Retreval Sulleyman Cetntas

More information

Effects of Estrogen Contamination on Human Cells: Modeling and Prediction Based on Michaelis-Menten Kinetics 1

Effects of Estrogen Contamination on Human Cells: Modeling and Prediction Based on Michaelis-Menten Kinetics 1 J. Water Resource and Protecton, 009,, 6- do:0.6/warp.009.500 Publshed Onlne ovember 009 (http://www.scrp.org/ournal/warp) Effects of Estrogen Contamnaton on Human Cells: Modelng and Predcton Based on

More information

Relevance of statistical techniques when using administrative health data: gender inequality in mortality from cardio-vascular disease

Relevance of statistical techniques when using administrative health data: gender inequality in mortality from cardio-vascular disease Relevance of statstcal technques when usng admnstratve health data: gender nequalty n mortalty from cardo-vascular dsease Julan Perelman Céu Mateus June 2010 Escola Naconal de Saúde Públca, Unversdade

More information

Estimation of Relative Survival Based on Cancer Registry Data

Estimation of Relative Survival Based on Cancer Registry Data Revew of Bonformatcs and Bometrcs (RBB) Volume 2 Issue 4, December 203 www.sepub.org/rbb Estmaton of Relatve Based on Cancer Regstry Data Olaf Schoffer *, Ante Nedostate 2, Stefane J. Klug,2 Cancer Epdemology,

More information

ST Segment Tracking for Rapid Determination of Patency of the Infarct-Related Artery in Acute Myocardial Infarction

ST Segment Tracking for Rapid Determination of Patency of the Infarct-Related Artery in Acute Myocardial Infarction JACC Vol. 26, No. 3 675 ST Segment Trackng for Rapd Determnaton of Patency of the nfarct-related Artery n Acute Myocardal nfarcton ALAND R. FERNANDEZ, MD, RAFAEL F. SEQUERA, MD, FRCP, FACC, SMON CHAKKO,

More information

A GEOGRAPHICAL AND STATISTICAL ANALYSIS OF LEUKEMIA DEATHS RELATING TO NUCLEAR POWER PLANTS. Whitney Thompson, Sarah McGinnis, Darius McDaniel,

A GEOGRAPHICAL AND STATISTICAL ANALYSIS OF LEUKEMIA DEATHS RELATING TO NUCLEAR POWER PLANTS. Whitney Thompson, Sarah McGinnis, Darius McDaniel, A GEOGRAPHICAL AD STATISTICAL AALYSIS OF LEUKEMIA DEATHS RELATIG TO UCLEAR POWER PLATS Whtney Thompson, Sarah McGnns, Darus McDanel, Jean Sexton, Rebecca Pettt, Sarah Anderson, Monca Jackson ABSTRACT:

More information

Engineered commensal microbes for dietmediated colorectal-cancer chemoprevention

Engineered commensal microbes for dietmediated colorectal-cancer chemoprevention SUPPLEMENTARY NFORMATON Artcles https://do.org/10.1038/s41551-017-0181-y n the format provded by the authors and unedted. Engneered commensal mcrobes for detmedated colorectal-cancer chemopreventon Chun

More information

A Classification Model for Imbalanced Medical Data based on PCA and Farther Distance based Synthetic Minority Oversampling Technique

A Classification Model for Imbalanced Medical Data based on PCA and Farther Distance based Synthetic Minority Oversampling Technique A Classfcaton Model for Imbalanced Medcal Data based on PCA and Farther Dstance based Synthetc Mnorty Oversamplng Technque NADIR MUSTAFA School of Computer Scence and Engneerng Unversty of Electronc Scence

More information

Evaluation of Literature-based Discovery Systems

Evaluation of Literature-based Discovery Systems Evaluaton of Lterature-based Dscovery Systems Melha Yetsgen-Yldz 1 and Wanda Pratt 1,2 1 The Informaton School, Unversty of Washngton, Seattle, USA. 2 Bomedcal and Health Informatcs, School of Medcne,

More information

Length of Hospital Stay After Acute Myocardial Infarction in the Myocardial Infarction Triage and Intervention (MITI) Project Registry

Length of Hospital Stay After Acute Myocardial Infarction in the Myocardial Infarction Triage and Intervention (MITI) Project Registry JACC Vol. 28, No. 2 287 CLINICAL STUDIES MYOCARDIAL INFARCTION Length of Hosptal Stay After Acute Myocardal Infarcton n the Myocardal Infarcton Trage and Interventon (MITI) Project Regstry NATHAN R. EVERY,

More information

Prototypes in the Mist: The Early Epochs of Category Learning

Prototypes in the Mist: The Early Epochs of Category Learning Journal of Expermental Psychology: Learnng, Memory, and Cognton 1998, Vol. 24, No. 6, 1411-1436 Copyrght 1998 by the Amercan Psychologcal Assocaton, Inc. 0278-7393/98/S3.00 Prototypes n the Mst: The Early

More information

EVALUATION OF BULK MODULUS AND RING DIAMETER OF SOME TELLURITE GLASS SYSTEMS

EVALUATION OF BULK MODULUS AND RING DIAMETER OF SOME TELLURITE GLASS SYSTEMS Chalcogende Letters Vol. 12, No. 2, February 2015, p. 67-74 EVALUATION OF BULK MODULUS AND RING DIAMETER OF SOME TELLURITE GLASS SYSTEMS R. EL-MALLAWANY a*, M.S. GAAFAR b, N. VEERAIAH c a Physcs Dept.,

More information

ARTICLE IN PRESS Biomedical Signal Processing and Control xxx (2011) xxx xxx

ARTICLE IN PRESS Biomedical Signal Processing and Control xxx (2011) xxx xxx Bomedcal Sgnal Processng and Control xxx (2011) xxx xxx Contents lsts avalable at ScenceDrect Bomedcal Sgnal Processng and Control journa l h omepage: www.elsever.com/locate/bspc Dscovery of multple level

More information

A New Machine Learning Algorithm for Breast and Pectoral Muscle Segmentation

A New Machine Learning Algorithm for Breast and Pectoral Muscle Segmentation Avalable onlne www.ejaet.com European Journal of Advances n Engneerng and Technology, 2015, 2(1): 21-29 Research Artcle ISSN: 2394-658X A New Machne Learnng Algorthm for Breast and Pectoral Muscle Segmentaton

More information

Non-linear Multiple-Cue Judgment Tasks

Non-linear Multiple-Cue Judgment Tasks Non-lnear Multple-Cue Tasks Anna-Carn Olsson (anna-carn.olsson@psy.umu.se) Department of Psychology, Umeå Unversty SE-09 87, Umeå, Sweden Tommy Enqvst (tommy.enqvst@psyk.uu.se) Department of Psychology,

More information

Classification of Breast Tumor in Mammogram Images Using Unsupervised Feature Learning

Classification of Breast Tumor in Mammogram Images Using Unsupervised Feature Learning Amercan Journal of Appled Scences Orgnal Research Paper Classfcaton of Breast Tumor n Mammogram Images Usng Unsupervsed Feature Learnng 1 Adarus M. Ibrahm, 1 Baharum Baharudn, 1 Abas Md Sad and 2 P.N.

More information

Estimation of System Models by Swarm Intelligent Method

Estimation of System Models by Swarm Intelligent Method Sensors & Transducers 04 by IA Publshng, S. L. http://www.sensorsportal.com Estmaton of System Models by Swarm Intellgent Method,* Xaopng XU, Ququ ZHU, Feng WANG, Fuca QIAN, Fang DAI School of Scences,

More information

1 0 1 Neither A nor B I Both Anti-A and Anti-B 1 0, A, B, AB I 0 1. Simulated ABO 6; Rh Bood vping Lab Activity Student Study Guide BACKGROUND

1 0 1 Neither A nor B I Both Anti-A and Anti-B 1 0, A, B, AB I 0 1. Simulated ABO 6; Rh Bood vping Lab Activity Student Study Guide BACKGROUND Smulated ABO 6; Rh Bood vpng Lab Actvty Student Study Gude BACKGROUND nces Around 900, Karl Landstener dscovered that there are at least four dfferent knds of human blood, determned by the presence or

More information

A Support Vector Machine Classifier based on Recursive Feature Elimination for Microarray Data in Breast Cancer Characterization. Abstract.

A Support Vector Machine Classifier based on Recursive Feature Elimination for Microarray Data in Breast Cancer Characterization. Abstract. A Support Vector Machne Classfer based on Recursve Feature Elmnaton for Mcroarray Data n Breast Cancer Characterzaton. R.Campann, D. Dongovann, N. Lanconell, G. Palermo, A. Rccard, M. Roffll Dpartmento

More information

Comparison of support vector machine based on genetic algorithm with logistic regression to diagnose obstructive sleep apnea

Comparison of support vector machine based on genetic algorithm with logistic regression to diagnose obstructive sleep apnea Orgnal Artcle Comparson of support vector machne based on genetc algorthm wth logstc regresson to dagnose obstructve sleep apnea Zohreh Manoochehr, Nader Salar 1, Mansour Rezae 1, Habbolah Khazae 2, Sara

More information

The Limits of Individual Identification from Sample Allele Frequencies: Theory and Statistical Analysis

The Limits of Individual Identification from Sample Allele Frequencies: Theory and Statistical Analysis The Lmts of Indvdual Identfcaton from Sample Allele Frequences: Theory and Statstcal Analyss Peter M. Vsscher 1 *, Wllam G. Hll 2 1 Queensland Insttute of Medcal Research, Brsbane, Australa, 2 Insttute

More information

The Effect of Fish Farmers Association on Technical Efficiency: An Application of Propensity Score Matching Analysis

The Effect of Fish Farmers Association on Technical Efficiency: An Application of Propensity Score Matching Analysis The Effect of Fsh Farmers Assocaton on Techncal Effcency: An Applcaton of Propensty Score Matchng Analyss Onumah E. E, Esslfe F. L, and Asumng-Brempong, S 15 th July, 2016 Background and Motvaton Outlne

More information

Comparison among Feature Encoding Techniques for HIV-1 Protease Cleavage Specificity

Comparison among Feature Encoding Techniques for HIV-1 Protease Cleavage Specificity Internatonal Journal of Intellgent Systems and Applcatons n Engneerng Advanced Technology and Scence ISSN:2147-67992147-6799 http://jsae.atscence.org/ Orgnal Research Paper Comparson among Feature Encodng

More information

Balanced Query Methods for Improving OCR-Based Retrieval

Balanced Query Methods for Improving OCR-Based Retrieval Balanced Query Methods for Improvng OCR-Based Retreval Kareem Darwsh Electrcal and Computer Engneerng Dept. Unversty of Maryland, College Park College Park, MD 20742 kareem@glue.umd.edu Douglas W. Oard

More information

Heart Rate Variability Analysis Diagnosing Atrial Fibrillation

Heart Rate Variability Analysis Diagnosing Atrial Fibrillation X-ray PIV Measurements of Velocty Feld of Blood Flows Volume 5, umber 2: 46-52, October 2007 Internatonal Journal of Vascular Bomedcal Engneerng Heart Rate Varablty Analyss Dagnosng Atral Fbrllaton Jnho

More information

Semantics and image content integration for pulmonary nodule interpretation in thoracic computed tomography

Semantics and image content integration for pulmonary nodule interpretation in thoracic computed tomography Semantcs and mage content ntegraton for pulmonary nodule nterpretaton n thoracc computed tomography Danela S. Racu a, Ekarn Varutbangkul a, Jane G. Csneros a, Jacob D. Furst a, Davd S. Channn b, Samuel

More information

A Support Vector Machine Classifier based on Recursive Feature Elimination for Microarray Data in Breast Cancer Characterization. Abstract.

A Support Vector Machine Classifier based on Recursive Feature Elimination for Microarray Data in Breast Cancer Characterization. Abstract. A Support Vector Machne Classfer based on Recursve Feature Elmnaton for Mcroarray Data n Breast Cancer Characterzaton. R.Campann, D. Dongovann, E. Iamper, N. Lanconell, G. Palermo, M. Roffll, A. Rccard

More information

A New Diagnosis Loseless Compression Method for Digital Mammography Based on Multiple Arbitrary Shape ROIs Coding Framework

A New Diagnosis Loseless Compression Method for Digital Mammography Based on Multiple Arbitrary Shape ROIs Coding Framework I.J.Modern Educaton and Computer Scence, 2011, 5, 33-39 Publshed Onlne August 2011 n MECS (http://www.mecs-press.org/) A New Dagnoss Loseless Compresson Method for Dgtal Mammography Based on Multple Arbtrary

More information

HERMAN AGUINIS University of Colorado at Denver. SCOTT A. PETERSEN U.S. Military Academy at West Point. CHARLES A. PIERCE Montana State University

HERMAN AGUINIS University of Colorado at Denver. SCOTT A. PETERSEN U.S. Military Academy at West Point. CHARLES A. PIERCE Montana State University ORGANIZATIONAL Aguns et al. / MODERATING RESEARCH EFFECTS METHODS Apprasal of the Homogenety of Error Varance Assumpton and Alternatves to Multple Regresson for Estmatng Moderatng Effects of Categorcal

More information

NUMERICAL COMPARISONS OF BIOASSAY METHODS IN ESTIMATING LC50 TIANHONG ZHOU

NUMERICAL COMPARISONS OF BIOASSAY METHODS IN ESTIMATING LC50 TIANHONG ZHOU NUMERICAL COMPARISONS OF BIOASSAY METHODS IN ESTIMATING LC50 by TIANHONG ZHOU B.S., Chna Agrcultural Unversty, 2003 M.S., Chna Agrcultural Unversty, 2006 A THESIS submtted n partal fulfllment of the requrements

More information

Fast Algorithm for Vectorcardiogram and Interbeat Intervals Analysis: Application for Premature Ventricular Contractions Classification

Fast Algorithm for Vectorcardiogram and Interbeat Intervals Analysis: Application for Premature Ventricular Contractions Classification Fast Algorthm for Vectorcardogram and Interbeat Intervals Analyss: Applcaton for Premature Ventrcular Contractons Classfcaton Irena Jekova, Vessela Krasteva Centre of Bomedcal Engneerng Prof. Ivan Daskalov

More information

Myocardial Motion Analysis of Echocardiography Images using Optical Flow Radial Direction Distribution

Myocardial Motion Analysis of Echocardiography Images using Optical Flow Radial Direction Distribution Journal of Computer Scence 7 (7): 1046-1051, 011 ISSN 1549-3636 011 Scence Publcatons Myocardal Moton Analyss of Echocardography Images usng Optcal Flow Radal Drecton Dstrbuton Slamet Ryad, Mohd Marzuk

More information