Supplementary Figure 1. c Human

Size: px
Start display at page:

Download "Supplementary Figure 1. c Human"

Transcription

1 Supplementary Figure 1 a b c Human Mouse d Gapdh Amino acid sequence and baseline expression of MYDGF N-terminal signal peptides (S-scores) and signal peptide cleavage sites (C-scores) of (a) human MYDGF (C19orf1) and (b) mouse (D17Wsu14e) as predicted by the SignalP 4.1 algorithm. (c) Amino acid sequence alignment of human and mouse MYDGF. Identical and highly conserved (+) amino acids are shown. Signal peptides are highlighted in green. (d) Representative immunoblots (of three) showing and Gapdh expression in mouse tissues (LV, left ventricle).

2 Supplementary Figure 2 a Control VEGFA b c Branching points (per field) Closed tubes (per field) Control VEGFA Control VEGFA *** *** ** (ng ml -1 ) * ** *** (ng ml -1 ) Endothelial cell network formation We stimulated human coronary artery endothelial cells for 16 h with VEGFA (5 ng ml 1 ) and different concentrations of. We stained the cells with BCECF-AM for quantitative analysis. (a) Representative fluorescent images (1 ng ml 1 ). Scale bar, 2 µm. (b) Branching points and (c) closed tubes from 4 independent experiments. (b,c) Data are presented as the means ± s.e.m. *P <.5, **P <.1, ***P <.1 vs. control (one-way ANOVA with Dunnett s multiple comparison post hoc test).

3 Supplementary Figure 3 (4 pages) a MI 1 d / Gapdh (%) MI 3 d / Gapdh (%) Ly-6C low EC Ly-6C low Ly-6C low Ly-6C low MI 7 d 25 Bone marrow Spleen Peripheral blood / Gapdh (%) Ly-6C low Ly-6C low Ly-6C low Sham 1 d

4 Supplementary Figure 3 (cont.) b Infarcted region Ly-6C low c Infarcted region Endothelial cells

5 Supplementary Figure 3 (cont.) d Bone marrow Ly-6C low e Spleen Ly-6C low

6 Supplementary Figure 3 (cont.) f Peripheral blood Ly-6Clow expression in inflammatory cells and endothelial cells after MI We induced myocardial infarction (MI) in mice by coronary artery ligation for 1 h followed by reperfusion for 1, 3, or 7 d. Control mice underwent a sham operation. (a) expression (RT-qPCR, normalized to Gapdh) in monocytes, Ly-6C low monocytes or macrophages, neutrophils,,, and endothelial cells (EC) isolated by FACS from the infarcted region of the left ventricle, bone marrow, spleen, and peripheral blood. Data obtained 3 d after MI are also presented in Fig. 4f. Shown are the means ± s.e.m. from 5 mice (infarcted heart) and 4 mice (bone marrow, spleen, and peripheral blood) 1 d after MI; 4 mice (infarcted heart and spleen), 5 mice (bone marrow), and 3 mice (peripheral blood) 3 d after MI; 4 mice (all organs) 7 d after MI; 5 mice (bone marrow), 3 mice (spleen), and 4 mice (peripheral blood) 1 d after sham surgery. We defined the expression in heart monocytes 3 d after MI as 1%. (b f) Gating strategy. Representative panels 3 d after MI. (b,c) Infarcted region. (d) Bone marrow. (e) Spleen. (f) Peripheral blood.

7 Supplementary Figure 4 (4 pages) a WT K 1 2 B X b Sham MI WT KO WT KO Vector Neo Gapdh 5. kb 3.4 kb KO Neo c WT K 11.3 kb 1 2 B X 1.4 kb d +/+ +/+ F6 +/ +/+ +/+ B8 +/ +/+ +/+ E5 +/ WT (11.3 kb) KO (1.4 kb) KO Neo e 664 bp f M +/ +/ / +/+ +/+ / / +/ WT K 1 2 B X WT (664 bp) 153 bp KO (153 bp) KO Neo

8 Supplementary Figure 4 (cont.) g 3 h WT KO 5 WT KO Time (d) Time (d)

9 Supplementary Figure 4 (cont.) i 1, 1, 1 WT KO 1 j 1 Ly-6C low Ly-6C low

10 Supplementary Figure 4 (cont.) k WT KO l 6 Coverage N (per field) Junctions (per field) WT KO Generation and characterization at baseline of -deficient mice (a) Restriction map and intron and exon structure of the (D17Wsu14e) genomic locus (wild-type, WT), the targeting construct (vector), and the targeted allele (knockout, KO). B, BamHI; K, KpnI; X, XbaI; Neo, neomycin resistance cassette. (b) We induced myocardial infarction (MI) in WT and KO mice by 1 h coronary artery ligation followed by reperfusion. Control mice underwent a sham operation. Immunoblots show and Gapdh expression in the infarcted region of the left ventricle 3 d after reperfusion or sham operation. (c) Primer pair used for whole locus spanning genomic PCR analysis. (d) Genomic PCR analysis of 9 ES cell clones after electroporation of the targeting construct. We used clone E5 to generate chimeric mice. (e) Primer pairs used for PCR genotyping of WT and KO alleles. (f) Representative gel illustrating PCR genotyping results from 8 offspring of a heterozygous mating. M, molecular size marker. (g,h) We monitored postnatal body mass gain in (g) 12 WT and 8 KO male mice and (h) 8 WT and 11 KO female mice. Data are presented as the means ± s.e.m. (i) Number of circulating neutrophils,,, and and Ly-6C low monocytes in WT (n = 5) and KO (n = 5) mice under baseline conditions as assessed by flow cytometry. Data are presented as the means ± s.e.m. (j) Gating strategy. Representative panels are from a WT mouse. (k,l) Postnatal retinal angiogenesis in WT and KO mice. (k) Representative fluorescent images representing retinas from 5 d old WT and KO mice stained with fluorescein-labeled isolectin B4. Scale bar, 1 mm. (l) Number of angiogenic sprouts at the angiogenic front, vascular plexus complexity, and endothelial coverage of the retina. Summary data (means ± s.e.m.) are from 7 WT and 6 KO mice.

11 Supplementary Figure 5 LV pressure (mmhg) WT, sham KO, sham WT, MI KO, MI LV volume (µl) Pressure-volume loops in wild-type and knockout mice We induced myocardial infarction (MI) in wild-type (WT) and knockout (KO) mice by coronary artery ligation for 1 h followed by reperfusion. Control mice underwent a sham operation. Representative left ventricular (LV) pressure-volume loops were recorded 28 d after MI.

12 Supplementary Figure 6 a (per mg) cells (per mg) 5, 4, 3, 2, 1, 1, , WT KO b Time (d) Time (d) Time (d) Inflammatory cell accumulation after MI in wild-type and knockout mice Ly-6C low We induced myocardial infarction (MI) in wild-type (WT) and knockout (KO) mice by coronary artery ligation for 1 h followed by reperfusion. (a) Accumulation of neutrophils, monocytes, Ly-6C low monocytes or macrophages,, and in the infarcted region of the left ventricle as assessed by flow cytometry 1 d (5 WT, 5 KO), 3 d (4 WT, 3 KO), and 7 d (4 WT, 3 KO) after reperfusion. Data are presented as the means ± s.e.m. *P <.5 WT vs. KO, P =.6 WT vs. KO (two independent sample t-test). (b) Gating strategy. Representative panels are from a WT mouse 3 d after MI.

13 Supplementary Figure 7 a b c ** * ** ** KO KO WT KO WT WT KO WT KO KO WT KO WT WT KO WT FAC (%) KO KO * ** WT KO WT WT KO WT Importance of bone marrow cell-derived after MI We transplanted ( ) bone marrow cells from wild-type (WT) and knockout (KO) mice into lethally irradiated WT or KO recipients. After bone marrow reconstitution, we induced myocardial infarction (MI) by coronary artery ligation for 1 h followed by reperfusion. (a) Isolectin B4 (IB4) + endothelial cell density in the infarct border zone 28 d after reperfusion. CM, cardiac myocyte. 1 mice per group. Data are presented as means ± s.e.m. *P <.5, **P <.1 (two independent sample t-test). (b) Scar size 28 d after reperfusion. 1 mice per group. Data are presented as means ± s.e.m. **P <.1 (two independent sample t-test). (c) Fractional area change (FAC) as determined by echocardiography 28 d after reperfusion in 8 KO KO, 13 WT KO, 15 WT WT, and 12 KO WT mice. Scatter plot shows values from individual mice. Horizontal bars are the means. *P <.5, **P <.1 (two independent sample t-test).

14 Supplementary Figure 8 a Plasma (fold increase) Time (min) i.v. bolus b Plasma (fold increase) LV bolus 15 min Time (d) s.c. infusion Control Rec. 1h ischemia c Baseline 15 min Control 15 min Rec. 2 d 6 d 9 d 2 d 6 d 9 d Rec. Gapdh Pharmacokinetics of recombinant (a) plasma levels in 4 non-infarcted FVB/N mice as determined by targeted LC-MS at serial time points after i.v. (tail vein) bolus injection of recombinant (rec.) (1 µg). Data are presented as means ± s.e.m. (fold increase vs. baseline which is indicated by the dashed red line). Elimination of from plasma after 15 min followed a first-order kinetic (R² =.86) with an estimated half-life of 15.3 min (95% confidence interval min). (b,c) We induced myocardial infarction in FVB/N mice by coronary artery ligation for 1 h followed by reperfusion. We injected rec. (1 µg) into the left ventricular (LV) cavity at the time of reperfusion followed by s.c. infusion for 7 d (1µg d 1 ). We treated infarcted control mice with PBS. (b) plasma levels as determined by targeted LC-MS at serial time points. 5 mice per group and time point. Data are presented as means ± s.e.m. (fold increase vs. baseline which is indicated by the dashed red line). (c) Delivery of rec. to the infarcted region of the left ventricle as determined by anti-his-tag immunoblotting. Representative immunoblot (of four) illustrating rec. and Gapdh expression.

15 Supplementary Figure 9 a c - SP LacZ Gapdh Liver LacZ - SP LacZ Left ventricle - SP Infarct scar (% of LV) b IB4 DAPI WGA LacZ - SP LacZ d FAC (%) LacZ - SP *** - SP IB4 + cells (per CM) LacZ *** *** - SP LacZ - SP MI 6 d MI 28 d Adenoviral gene transfer in vivo (a) Representative immunoblots (of three) showing and Gapdh expression in the liver and left ventricle of FVB/N mice 7 d after i.v. infection with adenoviruses encoding β-galactosidase (lacz), full-length, or lacking the N-terminal signal peptide ( SP). (b d) 7 d after adenovirus infection, we induced myocardial infarction by coronary artery ligation for 1 h followed by reperfusion. (b) Fluoresceinlabeled isolectin B4 (IB4) + capillaries in the infarct border zone 28 d after reperfusion; extracellular matrix and cardiac myocyte (CM) borders are highlighted by WGA staining. Scale bar, 5µm. Summary data (means ± s.e.m.) are from 7 mice per group. ***P <.1 vs. lacz (one-way ANOVA with Dunnett s multiple comparison post hoc test). (c) Scar size 28 d after reperfusion. Representative tissue sections stained with Masson s trichrome. Scale bar, 1 mm. Summary data (means ± s.e.m.) from 16 LacZ, 15, and 9 - SP mice. ***P <.1 vs. lacz (one-way ANOVA with Dunnett s multiple comparison post hoc test). (d) Fractional area change (FAC) as determined by echocardiography 6 and 28 d after reperfusion in 17 LacZ, 15, and 9 - SP mice. Scatter plot shows values from individual mice. Horizontal bars are the means. ***P <.1 vs. lacz (for each time point one-way ANOVA with Dunnett s multiple comparison post hoc test).

16 Supplementary Figure 1 a Control b FAC (%) *** ### Sham MI, control MI, Delayed protein therapy after MI We induced myocardial infarction (MI) in FVB/N mice by coronary artery ligation for 1 h followed by reperfusion. Additional mice underwent a sham operation. We delivered by s.c. infusion for 7 d (1µg d 1 ) starting 6 h after reperfusion. We treated infarcted control mice with diluent only (PBS). (a) Scar size 28 d after reperfusion. Summary data (means ± s.e.m.) from 12 control and 14 -treated mice. **P <.1 (two independent sample t-test). (b) Fractional area change (FAC) as determined by echocardiography 28 d after reperfusion in 14 control mice, 16 -treated mice, and 6 sham-operated mice. Scatter plot shows values from individual mice. Horizontal bars are the means. ***P <.1 vs. both MI groups, ### P <.1 (one-way ANOVA with Tukey s multiple comparison post hoc test).

17 Supplementary Figure 11 (2 pages) a M P b kda M r (Da) M r UV V e (ml) c Anti-MYDGF No antibody Control IgG Input Eluate Beads Input Eluate Beads Input Eluate Beads d BrdU incorporation (%) Control -IP e BrdU incorporation (%) ** *** *** *** *** Control IgG ( g ml -1 ) Anti-MYDGF ( g ml -1 )

18 Supplementary Figure 11 (cont.) Production and validation of recombinant (a) SDS-PAGE analysis of the final recombinant protein preparation. We applied marker proteins (M, Mark12 Novex, Life Technologies) and 5 µl of the final protein preparation (P) to a 4 12% polyacrylamide gel. We stained the proteins with Coomassie Blue after electrophoresis. (b) Analytical size exclusion chromatography of the final protein preparation. The relative protein concentration (UV) and the absolute molecular mass (M r ) from the region of the chromatographic peak, as computed via the basic lightscattering equation, are plotted against the elution volume (V e ). (c) We immunoprecipitated from the final protein preparation using Dynabeads coated with the MYDGF antibody. We analyzed aliquots from the final protein preparation (input), the protein eluted from the beads (eluate), and the beads after protein elution (beads) by immunoblotting. We repeated the experiment using beads coated with no antibody or with control IgG. (d) We stimulated human coronary artery endothelial cells (HCAECs) with recombinant (1 ng ml 1 ) and immunoprecipitated from the final protein preparation (IP, 1 ng ml 1 ). We assessed BrdU incorporation after 16 h. 4 independent experiments. ***P <.1 vs. control (one-way ANOVA with Dunnett s multiple comparison post hoc test). (e) We stimulated HCAECs with recombinant (1 ng ml 1 ) in the presence or absence of various concentrations of the MYDGF antibody or control IgG. We assessed BrdU incorporation after 16 h. Control: 6 independent experiments. IgG alone: 3 independent experiments. Other conditions: 4 independent experiments. **P <.1, ***P <.1 vs. without antibody (one-way ANOVA with Dunnett s multiple comparison post hoc test).

19 Supplementary Table 1. List of candidate proteins Official full name (official symbol) NCBI Reference Sequence D- score Biological activities (% of control) Cardiac myocytes MTS assay NNscore Caspase- 3 and 7 activity Endothelial cells BrdU Closed tubes Candidate proteins possibly secreted via the classical secretory pathway Ly6/neurotoxin 1 (LYNX1) NM_ Chromosome 19 open reading frame 1 (C19orf1) NM_ Chromosome 1 open reading frame 99 (C1orf99) NM_ Podocan-like 1 (PODNL1) NM_ Chitinase domain containing 1 (CHID1) AF ER membrane protein complex subunit 1 (EMC1) NM_ Chromosome 12 open reading frame 39 (C12orf39) NM_ Von Willebrand factor C and EGF domains (VWCE) NM_ Arylsulfatase A (ARSA) NP_478.3 Cysteine-rich with EGF-like domains 2 (CRELD2).957 n.d. 1 ± 6 16 ± ± 8 13 ± 3.88 n.d. 154 ± ± ± ± n.d. 12 ± ± ± ± n.d. 144 ± 1 63 ± 2 19 ± 2 11 ± n.d. 124 ± 8 76 ± ± ± n.d. 11 ± 4 82 ± ± 2 14 ± 7.86 n.d. 135 ± 2 8 ± ± 3 97 ± 5.81 n.d. 19 ± 8 89 ± 8 18 ± 2 12 ± n.d. 85 ± 4 11 ± 2 11 ± 9 11 ± n.d. 94 ± 6 15 ± 6 97 ± 1 48 ± 4 1

20 NM_24324 Prenylcysteine oxidase 1 like (PCYOX1L) NM_ Chromosome X open reading frame 36 (CXorf36) NM_ Chromosome 1 open reading frame 54 (C1orf54) NM_24579 Chromosome 11 open reading frame 94 (C11orf94) NM_ Family with sequence similarity 96, member A (FAM96A) NM_ Family with sequence similarity 131, member A (FAM131A) NM_ Family with sequence similarity 172, member A (FAM172A) NM_ Inositol 1,4,5-trisphosphate receptor interacting protein (ITPRIP) NM_ Uncharacterized protein DKFZp667F711 AL Isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) (IAH1) NM_ n.d. 18 ± 2 18 ± ± 4 99 ± 6.75 n.d. 11 ± 6 11 ± ± 2 98 ± n.d. 11 ± 1 95 ± 8 19 ± 6 98 ± n.d. 19 ± 6 99 ± 2 17 ± 3 58 ± n.d. 142 ± 1 7 ± 7 13 ± 7 14 ± n.d. 177 ± 4 82 ± ± 3 17 ± n.d. 13 ± ± ± 2 17 ± 6.61 n.d. 111 ± 5 14 ± 8 63 ± ± n.d. 114 ± ± ± 1 99 ± n.d. 94 ± 2 93 ± 5 12 ± 5 99 ± 7 2

21 Candidate proteins possibly secreted via non-classical secretory pathways Chromosome 2 open reading frame 196 (C2orf196) NM_ Uncharacterized protein PRO2214 AF Chromosome 9 open reading frame 16 (C9orf16) NM_ Chromosome 6 open reading frame 226 (C6orf226) NM_ Methyltransferase like 5 (METTL5) NM_ Chromosome 1 open reading frame 11 (C1orf11) NM_ BRICK1, SCAR/WAVE actinnucleating complex subunit (BRK1) NM_ R3H domain containing 4 (R3HDM4) NM_ Family with sequence similarity 13, member A1 (FAM13A1) NM_ KIAA513 NM_ FANCD2 opposite strand (FANCD2OS) NM_ ± 6 58 ± ± ± ± 2 15 ± ± ± ± 4 9 ± 4 16 ± 3 14 ± ± 4 13 ± ± 2 14 ± ± ± ± ± ± ± ± 8 12 ± ± ± ± ± ± ± ± 3 99 ± ± ± 7 14 ± ± ± 8 98 ± ± 9 97 ± ± 4 96 ± ± ± 5 3

22 LSM12 homolog (S. cerevisiae) (LSM12) NM_ Proline-rich coiled-coil 1 (PRRC1) NM_ Coiled-coil domain containing 43 (CCDC43) NM_ Family with sequence similarity 136, member A (FAM136A) NM_ Migration and invasion enhancer 1 (MIEN1) NM_ Chromosome 1 open reading frame 21 (C1orf21) NM_386.3 Parkinson disease 7 domain containing 1 (PDDC1) NM_ Methyltransferase like 23 (METTL23) NM_ Chromosome 17 open reading frame 72 (C17orf72) NM_ Chromosome 18 open reading frame 54 (C18orf54) NM_ Family with sequence similarity 78, member A (FAM78A) NM_ ± ± 9 14 ± 9 19 ± ± 6 94 ± 7 12 ± 6 1 ± ± ± 6 12 ± ± ± 6 99 ± ± 2 12 ± ± 2 99 ± ± ± ± ± 7 96 ± 4 95 ± ± 7 96 ± ± 3 17 ± ± 6 17 ± ± 5 12 ± ± 1 12 ± 9 11 ± 6 16 ± ± 4 14 ± ± 8 11 ± ± ± ± 5 18 ± 4 4

23 Positive controls Growth differentiation factor 15 (GDF15) NM_ Vascular endothelial growth factor A (VEGFA) NM_ n.d. 148 ± 6 52 ± 3 n.d. n.d..859 n.d. n.d. n.d. 121 ± 3 13 ± 1 List of candidate proteins possibly secreted via the classical secretory pathway (D-score >.45) or via non-classical secretory pathways (D-score <.45; NN-score >.5). Candidate proteins and positive controls (GDF15, VEGFA) were expressed individually in HEK-293 cells to obtain conditioned supernatants for functional screens in serum-starved neonatal rat ventricular myocytes (MTS assay, caspase-3 and -7 activity assay) and human coronary artery endothelial cells (BrdU incorporation, closed tube formation). C19orf1 is highlighted in blue. Data are presented as the means ± s.e.m. from at least 3 independent experiments. 5

24 Supplementary Table 2. PCR genotyping of 431 offspring from heterozygous matings WT +/ KO Total Males 59 (25.8) 19 (47.6) 61 (26.6) 229 (1) Females 47 (23.3) 12 (5.5) 53 (26.2) 22 (1) wild-type (WT), heterozygous (+/ ), and knockout (KO) mice. Data are presented as numbers (percentage).

25 Supplementary Table 3. Baseline phenotype of wild-type and knockout mice WT KO Gravimetry Body mass (g) 25.2 ± ±.8 Lung mass per body mass (mg g 1 ) 7.6 ± ±.6 Liver mass per body mass (mg g 1 ) 56.5 ± ± 6.3 Kidney mass per body mass (mg g 1 ) 6.4 ± ±.8 Spleen mass per body mass (mg g 1 ) 5.1 ± ±.3 LV mass per body mass (mg g 1 ) 4.2 ± ±.1 Echocardiography LVEDA (mm 2 ) 16.6 ± ±.7 LVESA (mm 2 ) 8.1 ± ±.3 Fractional area change (%) 49.8 ± ±.7 Tail-cuff plethysmography Systolic blood pressure (mmhg) 112 ± ± 3.9 Diastolic blood pressure (mmhg) 68 ± ± 5.3 Heart rate (min 1 ) 7 ± 1 71 ± 7 Baseline phenotype of 8 1 weeks old wild-type (WT) and knockout (KO) mice. Gravimetry and echocardiography, 16 mice per genotype; tail-cuff plethysmography, 8 mice per genotype. LV denotes left ventricular; LVEDA, LV end-diastolic area; LVESA, LV endsystolic area.

26 Supplementary Table 4. Left ventricular pressure-volume measurements in wild-type and knockout mice Heart rate (min 1 ) LV end-systolic pressure (mmhg) LV end-diastolic pressure (mmhg) LV end-systolic volume (µl) LV end-diastolic volume (µl) LV ejection fraction (%) dp/dt max (mmhg s 1 ) dp/dt min (mmhg s 1 ) τ (ms) WT sham KO sham WT MI KO MI 451 ± ± ± ± ± ± 8 17 ± 3* 98 ± 2* 14 ± 2 12 ± 1 14 ± 2 15 ± 2 14 ± 2 11 ± 2 3 ± 3* 45 ± 4***, ## 37 ± 2 34 ± 1 46 ± 4 56 ± 4** 71 ± 4 72 ± 4 41 ± 4*** 26 ± 3***, # 1,47 ± 864 1,685 ± 644 8,728 ± 999 6,64 ± 29** -9,57 ± 446-9,82 ± 332-7,41 ± 69* -5,373 ± 176***, # 8.4 ± ± ± ±.5** Myocardial infarction (MI) was induced in wild-type (WT, n = 8) and knockout (KO, n = 7) mice by 1 h coronary artery ligation followed by reperfusion. Control mice underwent a sham operation (5 mice per genotype). We recorded left ventricular (LV) pressure-volume loops after 28 d. Data are presented as the means ± s.e.m. *P <.5, **P <.1, ***P <.1 vs. same genotype sham, # P <.5, ## P <.1 KO MI vs. WT MI (two-way ANOVA with Tukey s multiple comparison post hoc test).

Kidney. Heart. Lung. Sirt1. Gapdh. Mouse IgG DAPI. Rabbit IgG DAPI

Kidney. Heart. Lung. Sirt1. Gapdh. Mouse IgG DAPI. Rabbit IgG DAPI a e Na V 1.5 Ad-LacZ Ad- 110KD b Scn5a/ (relative to Ad-LacZ) f 150 100 50 0 p = 0.65 Ad-LacZ Ad- c Heart Lung Kidney Spleen 110KD d fl/fl c -/- DAPI 20 µm Na v 1.5 250KD fl/fl Rabbit IgG DAPI fl/fl Mouse

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION a c e doi:10.1038/nature10407 b d f Supplementary Figure 1. SERCA2a complex analysis. (a) Two-dimensional SDS-PAGE gels of SERCA2a complexes. A silver-stained SDSPAGE gel is shown, which reveals a 12 kda

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION doi:10.1038/nature11429 S1a 6 7 8 9 Nlrc4 allele S1b Nlrc4 +/+ Nlrc4 +/F Nlrc4 F/F 9 Targeting construct 422 bp 273 bp FRT-neo-gb-PGK-FRT 3x.STOP S1c Nlrc4 +/+ Nlrc4 F/F casp1

More information

Nature Genetics: doi: /ng Supplementary Figure 1. Parameters and consequences of mononuclear cardiomyocyte frequency.

Nature Genetics: doi: /ng Supplementary Figure 1. Parameters and consequences of mononuclear cardiomyocyte frequency. Supplementary Figure 1 Parameters and consequences of mononuclear cardiomyocyte frequency. (a) Correlation of the frequency of mononuclear cardiomyocytes to the frequency of cardiomyocytes with three or

More information

Supplementary Figure 1. Confocal immunofluorescence showing mitochondrial translocation of Drp1. Cardiomyocytes treated with H 2 O 2 were prestained

Supplementary Figure 1. Confocal immunofluorescence showing mitochondrial translocation of Drp1. Cardiomyocytes treated with H 2 O 2 were prestained Supplementary Figure 1. Confocal immunofluorescence showing mitochondrial translocation of Drp1. Cardiomyocytes treated with H 2 O 2 were prestained with MitoTracker (red), then were immunostained with

More information

Supporting Information Table of Contents

Supporting Information Table of Contents Supporting Information Table of Contents Supporting Information Figure 1 Page 2 Supporting Information Figure 2 Page 4 Supporting Information Figure 3 Page 5 Supporting Information Figure 4 Page 6 Supporting

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature10188 Supplementary Figure 1. Embryonic epicardial genes are down-regulated from midgestation stages and barely detectable post-natally. Real time qrt-pcr revealed a significant down-regulation

More information

Supplementary material page 1/10

Supplementary material page 1/10 Supplementary Figure 1. Metoprolol administration during ongoing AMI reduces MVO in STEMI patients (a, b) Complete representative CMR exams (short-axis covering the entire left ventricle (LV) from base

More information

Supplementary Figure 1. Generation of knockin mice expressing L-selectinN138G. (a) Schematics of the Sellg allele (top), the targeting vector, the

Supplementary Figure 1. Generation of knockin mice expressing L-selectinN138G. (a) Schematics of the Sellg allele (top), the targeting vector, the Supplementary Figure 1. Generation of knockin mice expressing L-selectinN138G. (a) Schematics of the Sellg allele (top), the targeting vector, the targeted allele in ES cells, and the mutant allele in

More information

c Ischemia (30 min) Reperfusion (8 w) Supplementary Figure bp 300 bp Ischemia (30 min) Reperfusion (4 h) Dox 20 mg/kg i.p.

c Ischemia (30 min) Reperfusion (8 w) Supplementary Figure bp 300 bp Ischemia (30 min) Reperfusion (4 h) Dox 20 mg/kg i.p. a Marker Ripk3 +/ 5 bp 3 bp b Ischemia (3 min) Reperfusion (4 h) d 2 mg/kg i.p. 1 w 5 w Sacrifice for IF size A subset for echocardiography and morphological analysis c Ischemia (3 min) Reperfusion (8

More information

(a) Significant biological processes (upper panel) and disease biomarkers (lower panel)

(a) Significant biological processes (upper panel) and disease biomarkers (lower panel) Supplementary Figure 1. Functional enrichment analyses of secretomic proteins. (a) Significant biological processes (upper panel) and disease biomarkers (lower panel) 2 involved by hrab37-mediated secretory

More information

(Stratagene, La Jolla, CA) (Supplemental Fig. 1A). A 5.4-kb EcoRI fragment

(Stratagene, La Jolla, CA) (Supplemental Fig. 1A). A 5.4-kb EcoRI fragment SUPPLEMENTAL INFORMATION Supplemental Methods Generation of RyR2-S2808D Mice Murine genomic RyR2 clones were isolated from a 129/SvEvTacfBR λ-phage library (Stratagene, La Jolla, CA) (Supplemental Fig.

More information

Supplementary Fig. 1. GPRC5A post-transcriptionally down-regulates EGFR expression. (a) Plot of the changes in steady state mrna levels versus

Supplementary Fig. 1. GPRC5A post-transcriptionally down-regulates EGFR expression. (a) Plot of the changes in steady state mrna levels versus Supplementary Fig. 1. GPRC5A post-transcriptionally down-regulates EGFR expression. (a) Plot of the changes in steady state mrna levels versus changes in corresponding proteins between wild type and Gprc5a-/-

More information

and follicular helper T cells is Egr2-dependent. (a) Diagrammatic representation of the

and follicular helper T cells is Egr2-dependent. (a) Diagrammatic representation of the Supplementary Figure 1. LAG3 + Treg-mediated regulation of germinal center B cells and follicular helper T cells is Egr2-dependent. (a) Diagrammatic representation of the experimental protocol for the

More information

Nature Immunology: doi: /ni Supplementary Figure 1. Huwe1 has high expression in HSCs and is necessary for quiescence.

Nature Immunology: doi: /ni Supplementary Figure 1. Huwe1 has high expression in HSCs and is necessary for quiescence. Supplementary Figure 1 Huwe1 has high expression in HSCs and is necessary for quiescence. (a) Heat map visualizing expression of genes with a known function in ubiquitin-mediated proteolysis (KEGG: Ubiquitin

More information

Soluble ADAM33 initiates airway remodeling to promote susceptibility for. Elizabeth R. Davies, Joanne F.C. Kelly, Peter H. Howarth, David I Wilson,

Soluble ADAM33 initiates airway remodeling to promote susceptibility for. Elizabeth R. Davies, Joanne F.C. Kelly, Peter H. Howarth, David I Wilson, Revised Suppl. Data: Soluble ADAM33 1 Soluble ADAM33 initiates airway remodeling to promote susceptibility for allergic asthma in early life Elizabeth R. Davies, Joanne F.C. Kelly, Peter H. Howarth, David

More information

ECM1 controls T H 2 cell egress from lymph nodes through re-expression of S1P 1

ECM1 controls T H 2 cell egress from lymph nodes through re-expression of S1P 1 ZH, Li et al, page 1 ECM1 controls T H 2 cell egress from lymph nodes through re-expression of S1P 1 Zhenhu Li 1,4,Yuan Zhang 1,4, Zhiduo Liu 1, Xiaodong Wu 1, Yuhan Zheng 1, Zhiyun Tao 1, Kairui Mao 1,

More information

Postn MCM Smad2 fl/fl Postn MCM Smad3 fl/fl Postn MCM Smad2/3 fl/fl. Postn MCM. Tgfbr1/2 fl/fl TAC

Postn MCM Smad2 fl/fl Postn MCM Smad3 fl/fl Postn MCM Smad2/3 fl/fl. Postn MCM. Tgfbr1/2 fl/fl TAC A Smad2 fl/fl Smad3 fl/fl Smad2/3 fl/fl Tgfbr1/2 fl/fl 1. mm B Tcf21 MCM Tcf21 MCM Smad3 fl/fl Tcf21 MCM Smad2/3 fl/fl Tcf21 MCM Tgfbr1/2 fl/fl αmhc MCM C 1. mm 1. mm D Smad2 fl/fl Smad3 fl/fl Smad2/3

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Figure S1 Treatment with both Sema6D and Plexin-A1 sirnas induces the phenotype essentially identical to that induced by treatment with Sema6D sirna alone or Plexin-A1 sirna alone. (a,b) The cardiac tube

More information

IL-34 is a tissue-restricted ligand of CSF1R required for the development of Langerhans cells and microglia

IL-34 is a tissue-restricted ligand of CSF1R required for the development of Langerhans cells and microglia Supplementary Figures IL-34 is a tissue-restricted ligand of CSF1R required for the development of Langerhans cells and microglia Yaming Wang, Kristy J. Szretter, William Vermi, Susan Gilfillan, Cristina

More information

hemodynamic stress. A. Echocardiographic quantification of cardiac dimensions and function in

hemodynamic stress. A. Echocardiographic quantification of cardiac dimensions and function in SUPPLEMENTAL FIGURE LEGENDS Supplemental Figure 1. Fbn1 C1039G/+ hearts display normal cardiac function in the absence of hemodynamic stress. A. Echocardiographic quantification of cardiac dimensions and

More information

Supplementary Figure 1. Baf60c and baf180 are induced during cardiac regeneration in zebrafish. RNA in situ hybridization was performed on paraffin

Supplementary Figure 1. Baf60c and baf180 are induced during cardiac regeneration in zebrafish. RNA in situ hybridization was performed on paraffin Supplementary Figure 1. Baf60c and baf180 are induced during cardiac regeneration in zebrafish. RNA in situ hybridization was performed on paraffin sections from sham-operated adult hearts (a and i) and

More information

Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6.

Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6. Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6.129-Gt(ROSA)26Sor tm1(cre/ert2)tyj /J mice. To induce deletion of the Pten locus,

More information

Supplementary Figure 1. AdipoR1 silencing and overexpression controls. (a) Representative blots (upper and lower panels) showing the AdipoR1 protein

Supplementary Figure 1. AdipoR1 silencing and overexpression controls. (a) Representative blots (upper and lower panels) showing the AdipoR1 protein Supplementary Figure 1. AdipoR1 silencing and overexpression controls. (a) Representative blots (upper and lower panels) showing the AdipoR1 protein content relative to GAPDH in two independent experiments.

More information

Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures and Supplementary Table.

Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures and Supplementary Table. Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures and Supplementary Tale. Type of file: VI Title of file for HTML: Supplementary Movie 1 Description:

More information

X P. Supplementary Figure 1. Nature Medicine: doi: /nm Nilotinib LSK LT-HSC. Cytoplasm. Cytoplasm. Nucleus. Nucleus

X P. Supplementary Figure 1. Nature Medicine: doi: /nm Nilotinib LSK LT-HSC. Cytoplasm. Cytoplasm. Nucleus. Nucleus a b c Supplementary Figure 1 c-kit-apc-eflu780 Lin-FITC Flt3-Linc-Kit-APC-eflu780 LSK Sca-1-PE-Cy7 d e f CD48-APC LT-HSC CD150-PerCP-cy5.5 g h i j Cytoplasm RCC1 X Exp 5 mir 126 SPRED1 SPRED1 RAN P SPRED1

More information

In vivo bromodeoxyuridine (BrdU) incorporation was performed to analyze cell

In vivo bromodeoxyuridine (BrdU) incorporation was performed to analyze cell Supplementary Methods BrdU incorporation in vivo In vivo bromodeoxyuridine (BrdU) incorporation was performed to analyze cell proliferation in the heart. Mice were subjected to LI-TAC, and 5 days later

More information

doi: /nature14508 Rappsilber et al.

doi: /nature14508 Rappsilber et al. SUPPLEMENTARY INFORMATION doi:1.138/nature1458 Grosso et al. Barbosa et al. 74 72 45 33 47 7 51 Rappsilber et al. Supplementary Figure 1 a, Venn-Diagram of identified splice factors in the work of Barbossa

More information

Control. csarnt -/- Cre, f/f

Control. csarnt -/- Cre, f/f ody weight (g) A re,f/f re x f/f f/+ re, f/+ re,f/+ f/f x f/f f/+ cs -/- re, f/f re f/f re, f/f Normal chow Tamoxifen Tamoxifen Tamoxifen W 4W re f/f re, re/ff f/f re f/f re, re/ff f/f Normal chow Tamoxifen

More information

Supplementary Figure 1. EC-specific Deletion of Snail1 Does Not Affect EC Apoptosis. (a,b) Cryo-sections of WT (a) and Snail1 LOF (b) embryos at

Supplementary Figure 1. EC-specific Deletion of Snail1 Does Not Affect EC Apoptosis. (a,b) Cryo-sections of WT (a) and Snail1 LOF (b) embryos at Supplementary Figure 1. EC-specific Deletion of Snail1 Does Not Affect EC Apoptosis. (a,b) Cryo-sections of WT (a) and Snail1 LOF (b) embryos at E10.5 were double-stained for TUNEL (red) and PECAM-1 (green).

More information

Supplementary. limb. bars

Supplementary. limb. bars Figure 1. CD163 -/- mice exhibit a similar phenotype ass WT mice in the absence of ischemic injury. a, Laser Doppler analysiss with perfusion quantitation at baseline (n= =10 per group). b, Immunostaining

More information

Supplementary Figure 1.

Supplementary Figure 1. Supplementary Figure 1. Female Pro-ins2 -/- mice at 5-6 weeks of age were either inoculated i.p. with a single dose of CVB4 (1x10 5 PFU/mouse) or PBS and treated with αgalcer or control vehicle. On day

More information

Mesenchymal Stem Cells to Repair Vascular Damage after Chemotherapy: Past, Present and Future

Mesenchymal Stem Cells to Repair Vascular Damage after Chemotherapy: Past, Present and Future Mesenchymal Stem Cells to Repair Vascular Damage after Chemotherapy: Past, Present and Future Cell Therapy 2014 Las Vegas, NV, USA Sulaiman Al-Hashmi, PhD Sultan Qaboos University Oman What are MSCs? Stem

More information

Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk

Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk -/- mice were stained for expression of CD4 and CD8.

More information

Alternatively Activated Macrophages Determine the Repair of the Infarcted

Alternatively Activated Macrophages Determine the Repair of the Infarcted Alternatively Activated Macrophages Determine the Repair of the Infarcted Adult Murine Heart (Shiraishi et al.) List of Supplemental Materials Supplemental Methods Supplemental Figure 1. Cardiac CD206

More information

Probe. Hind III Q,!&#12?R'!! /0!!!!D1"?R'! vector. Homologous recombination

Probe. Hind III Q,!&#12?R'!! /0!!!!D1?R'! vector. Homologous recombination Supple-Zhang Page 1 Wild-type locus Targeting construct Targeted allele Exon Exon3 Exon Probe P1 P P3 FRT FRT loxp loxp neo vector amh I Homologous recombination neo P1 P P3 FLPe recombination Q,!&#1?R'!!

More information

TRAF6 ubiquitinates TGFβ type I receptor to promote its cleavage and nuclear translocation in cancer

TRAF6 ubiquitinates TGFβ type I receptor to promote its cleavage and nuclear translocation in cancer Supplementary Information TRAF6 ubiquitinates TGFβ type I receptor to promote its cleavage and nuclear translocation in cancer Yabing Mu, Reshma Sundar, Noopur Thakur, Maria Ekman, Shyam Kumar Gudey, Mariya

More information

Nature Immunology: doi: /ni Supplementary Figure 1. Cellularity of leukocytes and their progenitors in naive wild-type and Spp1 / mice.

Nature Immunology: doi: /ni Supplementary Figure 1. Cellularity of leukocytes and their progenitors in naive wild-type and Spp1 / mice. Supplementary Figure 1 Cellularity of leukocytes and their progenitors in naive wild-type and Spp1 / mice. (a, b) Gating strategies for differentiated cells including PMN (CD11b + Ly6G hi and CD11b + Ly6G

More information

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable Supplementary Figure 1. Frameshift (FS) mutation in UVRAG. (a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable A 10 DNA repeat, generating a premature stop codon

More information

E10.5 E18.5 P2 10w 83w NF1 HF1. Sham ISO. Bmi1. H3K9me3. Lung weight (g)

E10.5 E18.5 P2 10w 83w NF1 HF1. Sham ISO. Bmi1. H3K9me3. Lung weight (g) Myociyte cross-sectional Relative mrna levels Relative levels Relative mrna levels Supplementary Figures and Legends a 8 6 4 2 Ezh2 E1.5 E18.5 P2 1w 83w b Ezh2 p16 amhc b-actin P2 43w kd 37 86 16 wt mouse

More information

Supplementary Figure 1. Supernatants electrophoresis from CD14+ and dendritic cells. Supernatants were resolved by SDS-PAGE and stained with

Supplementary Figure 1. Supernatants electrophoresis from CD14+ and dendritic cells. Supernatants were resolved by SDS-PAGE and stained with Supplementary Figure 1. Supernatants electrophoresis from CD14+ and dendritic cells. Supernatants were resolved by SDS-PAGE and stained with Coomassie brilliant blue. One µg/ml recombinant human (rh) apo-e

More information

Lack of cadherins Celsr2 and Celsr3 impairs ependymal ciliogenesis, leading to fatal

Lack of cadherins Celsr2 and Celsr3 impairs ependymal ciliogenesis, leading to fatal Lack of cadherins Celsr2 and Celsr3 impairs ependymal ciliogenesis, leading to fatal hydrocephalus Fadel TISSIR, Yibo QU, Mireille MONTCOUQUIOL, Libing ZHOU, Kouji KOMATSU, Dongbo SHI, Toshihiko FUJIMORI,

More information

Suppl Video: Tumor cells (green) and monocytes (white) are seeded on a confluent endothelial

Suppl Video: Tumor cells (green) and monocytes (white) are seeded on a confluent endothelial Supplementary Information Häuselmann et al. Monocyte induction of E-selectin-mediated endothelial activation releases VE-cadherin junctions to promote tumor cell extravasation in the metastasis cascade

More information

Tcf21 MCM ; R26 mtmg Sham GFP Col 1/3 TAC 8W TAC 2W. Postn MCM ; R26 mtmg Sham GFP Col 1/3 TAC 8W TAC 2W

Tcf21 MCM ; R26 mtmg Sham GFP Col 1/3 TAC 8W TAC 2W. Postn MCM ; R26 mtmg Sham GFP Col 1/3 TAC 8W TAC 2W A Tcf21 MCM ; R26 mtmg Sham GFP Col 1/3 Tcf21 MCM ; R26 mtmg TAC 2W Tcf21 MCM ; R26 mtmg TAC 8W B Postn MCM ; R26 mtmg Sham GFP Col 1/3 Postn MCM ; R26 mtmg TAC 2W Postn MCM ; R26 mtmg TAC 8W Supplementary

More information

Nature Immunology: doi: /ni Supplementary Figure 1. Gene expression profile of CD4 + T cells and CTL responses in Bcl6-deficient mice.

Nature Immunology: doi: /ni Supplementary Figure 1. Gene expression profile of CD4 + T cells and CTL responses in Bcl6-deficient mice. Supplementary Figure 1 Gene expression profile of CD4 + T cells and CTL responses in Bcl6-deficient mice. (a) Gene expression profile in the resting CD4 + T cells were analyzed by an Affymetrix microarray

More information

(a-r) Whole mount X-gal staining on a developmental time-course of hearts from

(a-r) Whole mount X-gal staining on a developmental time-course of hearts from 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 Supplementary Figure 1 (a-r) Whole mount X-gal staining on a developmental time-course of hearts from Sema3d +/- ;Ephb4 LacZ/+ and Sema3d -/- ;Ephb4 LacZ/+ embryos.

More information

Supplementary Figure 1. Genotyping strategies for Mcm3 +/+, Mcm3 +/Lox and Mcm3 +/- mice and luciferase activity in Mcm3 +/Lox mice. A.

Supplementary Figure 1. Genotyping strategies for Mcm3 +/+, Mcm3 +/Lox and Mcm3 +/- mice and luciferase activity in Mcm3 +/Lox mice. A. Supplementary Figure 1. Genotyping strategies for Mcm3 +/+, Mcm3 +/Lox and Mcm3 +/- mice and luciferase activity in Mcm3 +/Lox mice. A. Upper part, three-primer PCR strategy at the Mcm3 locus yielding

More information

The Ufm1-activating enzyme Uba5 is indispensable for erythroid differentiation in mice

The Ufm1-activating enzyme Uba5 is indispensable for erythroid differentiation in mice Supplementary information The Ufm1-activating enzyme Uba5 is indispensable for erythroid differentiation in mice Kanako Tatsumi 1, 2, Harumi Yamamoto-Mukai 2, Ritsuko Shimizu 3, Satoshi Waguri 4, Yu-Shin

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature11095 Supplementary Table 1. Summary of the binding between Angptls and various Igdomain containing receptors as determined by flow cytometry analysis. The results were summarized from

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb2607 Figure S1 Elf5 loss promotes EMT in mammary epithelium while Elf5 overexpression inhibits TGFβ induced EMT. (a, c) Different confocal slices through the Z stack image. (b, d) 3D rendering

More information

Supplementary Materials for

Supplementary Materials for www.sciencesignaling.org/cgi/content/full/8/375/ra41/dc1 Supplementary Materials for Actin cytoskeletal remodeling with protrusion formation is essential for heart regeneration in Hippo-deficient mice

More information

The autoimmune disease-associated PTPN22 variant promotes calpain-mediated Lyp/Pep

The autoimmune disease-associated PTPN22 variant promotes calpain-mediated Lyp/Pep SUPPLEMENTARY INFORMATION The autoimmune disease-associated PTPN22 variant promotes calpain-mediated Lyp/Pep degradation associated with lymphocyte and dendritic cell hyperresponsiveness Jinyi Zhang, Naima

More information

Pearson r = P (one-tailed) = n = 9

Pearson r = P (one-tailed) = n = 9 8F4-Specific Lysis, % 1 UPN1 UPN3 8 UPN7 6 Pearson r =.69 UPN2 UPN5 P (one-tailed) =.192 4 UPN8 n = 9 2 UPN9 UPN4 UPN6 5 1 15 2 25 8 8F4, % Max MFI Supplementary Figure S1. AML samples UPN1-UPN9 show variable

More information

Figure S1. Sorting nexin 9 (SNX9) specifically binds psmad3 and not psmad 1/5/8. Lysates from AKR-2B cells untreated (-) or stimulated (+) for 45 min

Figure S1. Sorting nexin 9 (SNX9) specifically binds psmad3 and not psmad 1/5/8. Lysates from AKR-2B cells untreated (-) or stimulated (+) for 45 min Figure S1. Sorting nexin 9 (SNX9) specifically binds psmad3 and not psmad 1/5/8. Lysates from AKR2B cells untreated () or stimulated () for 45 min with 5 ng/ml TGFβ or 10 ng/ml BMP4 were incubated with

More information

Chronic variable stress activates hematopoietic stem cells

Chronic variable stress activates hematopoietic stem cells SUPPLEMENTARY INFORMATION Chronic variable stress activates hematopoietic stem cells Timo Heidt *, Hendrik B. Sager *, Gabriel Courties, Partha Dutta, Yoshiko Iwamoto, Alex Zaltsman, Constantin von zur

More information

well for 2 h at rt. Each dot represents an individual mouse and bar is the mean ±

well for 2 h at rt. Each dot represents an individual mouse and bar is the mean ± Supplementary data: Control DC Blimp-1 ko DC 8 6 4 2-2 IL-1β p=.5 medium 8 6 4 2 IL-2 Medium p=.16 8 6 4 2 IL-6 medium p=.3 5 4 3 2 1-1 medium IL-1 n.s. 25 2 15 1 5 IL-12(p7) p=.15 5 IFNγ p=.65 4 3 2 1

More information

Supplementary Figure 1 (Mu)

Supplementary Figure 1 (Mu) Supplementary Figure 1 (Mu) SBP (mmhg) 2 18 16 p

More information

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14-

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14- 1 Supplemental Figure Legends Figure S1. Mammary tumors of ErbB2 KI mice with 14-3-3σ ablation have elevated ErbB2 transcript levels and cell proliferation (A) PCR primers (arrows) designed to distinguish

More information

Nature Medicine: doi: /nm.4322

Nature Medicine: doi: /nm.4322 1 2 3 4 5 6 7 8 9 10 11 Supplementary Figure 1. Predicted RNA structure of 3 UTR and sequence alignment of deleted nucleotides. (a) Predicted RNA secondary structure of ZIKV 3 UTR. The stem-loop structure

More information

Supplementary Figure 1: Expression of NFAT proteins in Nfat2-deleted B cells (a+b) Protein expression of NFAT2 (a) and NFAT1 (b) in isolated splenic

Supplementary Figure 1: Expression of NFAT proteins in Nfat2-deleted B cells (a+b) Protein expression of NFAT2 (a) and NFAT1 (b) in isolated splenic Supplementary Figure 1: Expression of NFAT proteins in Nfat2-deleted B cells (a+b) Protein expression of NFAT2 (a) and NFAT1 (b) in isolated splenic B cells from WT Nfat2 +/+, TCL1 Nfat2 +/+ and TCL1 Nfat2

More information

Nature Immunology: doi: /ni.3412

Nature Immunology: doi: /ni.3412 Supplementary Figure 1 Gata1 expression in heamatopoietic stem and progenitor populations. (a) Unsupervised clustering according to 100 top variable genes across single pre-gm cells. The two main cell

More information

Supplementary Figure S1 Targeted disruption and overexpression of Gpr43 in mice. (a) A targeting vector was constructed by ligation of 3 fragments:

Supplementary Figure S1 Targeted disruption and overexpression of Gpr43 in mice. (a) A targeting vector was constructed by ligation of 3 fragments: Supplementary Figure S1 Targeted disruption and overexpression of Gpr43 in mice. (a) A targeting vector was constructed by ligation of 3 fragments: the 5' and 3' homology recombination arms and a fragment

More information

Supplemental Figure 1. Western blot analysis indicated that MIF was detected in the fractions of

Supplemental Figure 1. Western blot analysis indicated that MIF was detected in the fractions of Supplemental Figure Legends Supplemental Figure 1. Western blot analysis indicated that was detected in the fractions of plasma membrane and cytosol but not in nuclear fraction isolated from Pkd1 null

More information

Supplementary Figure 1. Prevalence of U539C and G540A nucleotide and E172K amino acid substitutions among H9N2 viruses. Full-length H9N2 NS

Supplementary Figure 1. Prevalence of U539C and G540A nucleotide and E172K amino acid substitutions among H9N2 viruses. Full-length H9N2 NS Supplementary Figure 1. Prevalence of U539C and G540A nucleotide and E172K amino acid substitutions among H9N2 viruses. Full-length H9N2 NS nucleotide sequences (a, b) or amino acid sequences (c) from

More information

Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures

Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures Type of file: MOV Title of file for HTML: Supplementary Movie 1 Description: NLRP3 is moving along

More information

Supplementary Information

Supplementary Information Supplementary Information Supplementary s Supplementary 1 All three types of foods suppress subsequent feeding in both sexes when the same food is used in the pre-feeding test feeding. (a) Adjusted pre-feeding

More information

Fetal gene upregulation by 1-wk TAC is significantly increased in mice lacking RGS2.

Fetal gene upregulation by 1-wk TAC is significantly increased in mice lacking RGS2. 3562-RG-1 Supplementary Figure 1 Fetal gene upregulation by 1-wk is significantly increased in mice lacking RGS2. ANP(Nppa) /BNP(Nppb) A-type and B-type natriuretic peptide; β-mhc (Myh7) beta myosin heavy

More information

Electron micrograph of phosphotungstanic acid-stained exosomes derived from murine

Electron micrograph of phosphotungstanic acid-stained exosomes derived from murine 1 SUPPLEMENTARY INFORMATION SUPPLEMENTARY FIGURES Supplementary Figure 1. Physical properties of murine DC-derived exosomes. a, Electron micrograph of phosphotungstanic acid-stained exosomes derived from

More information

Supplementary Figure 1. PD-L1 is glycosylated in cancer cells. (a) Western blot analysis of PD-L1 in breast cancer cells. (b) Western blot analysis

Supplementary Figure 1. PD-L1 is glycosylated in cancer cells. (a) Western blot analysis of PD-L1 in breast cancer cells. (b) Western blot analysis Supplementary Figure 1. PD-L1 is glycosylated in cancer cells. (a) Western blot analysis of PD-L1 in breast cancer cells. (b) Western blot analysis of PD-L1 in ovarian cancer cells. (c) Western blot analysis

More information

Supplementary Figure 1

Supplementary Figure 1 Supplementary Figure 1 Supplementary Figure 1 Schematic depiction of the tandem Fc GDF15. Supplementary Figure 2 Supplementary Figure 2 Gfral mrna levels in the brains of both wild-type and knockout Gfral

More information

Table S1. Sequence of human and mouse primers used for RT-qPCR measurements.

Table S1. Sequence of human and mouse primers used for RT-qPCR measurements. Table S1. Sequence of human and mouse primers used for RT-qPCR measurements. Ca9, carbonic anhydrase IX; Ndrg1, N-myc downstream regulated gene 1; L28, ribosomal protein L28; Hif1a, hypoxia inducible factor

More information

pplementary Figur Supplementary Figure 1. a.

pplementary Figur Supplementary Figure 1. a. pplementary Figur Supplementary Figure 1. a. Quantification by RT-qPCR of YFV-17D and YFV-17D pol- (+) RNA in the supernatant of cultured Huh7.5 cells following viral RNA electroporation of respective

More information

supplementary information

supplementary information DOI:.38/ncb1963 a wild 5.3kb 11.2kb targeting vector stop PCR primer KKpn NNhe targeted allele 5.7kb 6.8kb probe b d (g) 35 3 25 2 genomic Southern blot Kpn I digest Nhe I digest / / / / / / 11.2 kb 5.7

More information

Supplementary Figure 1. Deletion of Smad3 prevents B16F10 melanoma invasion and metastasis in a mouse s.c. tumor model.

Supplementary Figure 1. Deletion of Smad3 prevents B16F10 melanoma invasion and metastasis in a mouse s.c. tumor model. A B16F1 s.c. Lung LN Distant lymph nodes Colon B B16F1 s.c. Supplementary Figure 1. Deletion of Smad3 prevents B16F1 melanoma invasion and metastasis in a mouse s.c. tumor model. Highly invasive growth

More information

Supplementary Figure 1. Dynamic Response of WT and mir-21 -/- mice to caerulein. (a) Representative histological sections of mouse pancreas stained

Supplementary Figure 1. Dynamic Response of WT and mir-21 -/- mice to caerulein. (a) Representative histological sections of mouse pancreas stained Supplementary Figure 1. Dynamic Response of WT and mir-21 -/- mice to caerulein. (a) Representative histological sections of mouse pancreas stained with hematoxylin from caerulein-treated WT and mir-21

More information

Cells and reagents. Synaptopodin knockdown (1) and dynamin knockdown (2)

Cells and reagents. Synaptopodin knockdown (1) and dynamin knockdown (2) Supplemental Methods Cells and reagents. Synaptopodin knockdown (1) and dynamin knockdown (2) podocytes were cultured as described previously. Staurosporine, angiotensin II and actinomycin D were all obtained

More information

Supplemental Fig. 1. Relative mrna Expression. Relative mrna Expression WT KO WT KO RT 4 0 C

Supplemental Fig. 1. Relative mrna Expression. Relative mrna Expression WT KO WT KO RT 4 0 C Supplemental Fig. 1 A 1.5 1..5 Hdac11 (ibat) n=4 n=4 n=4 n=4 n=4 n=4 n=4 n=4 WT KO WT KO WT KO WT KO RT 4 C RT 4 C Supplemental Figure 1. Hdac11 mrna is undetectable in KO adipose tissue. Quantitative

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Supplementary Figure 1. Long-term protection studies. 45 minutes of ischemia was induced in wild type (S1pr2 +/+ ) and S1pr2 -/- by MCAO. A) 5 days later brains were harvested

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION 1. Supplementary Figures and Legends Supplementary Fig. 1. S1P-mediated transcriptional regulation of integrins expressed in OP/monocytoid cells. Real-time quantitative PCR analyses of mrna for two integrins,

More information

S1a S1b S1c. S1d. S1f S1g S1h SUPPLEMENTARY FIGURE 1. - si sc Il17rd Il17ra bp. rig/s IL-17RD (ng) -100 IL-17RD

S1a S1b S1c. S1d. S1f S1g S1h SUPPLEMENTARY FIGURE 1. - si sc Il17rd Il17ra bp. rig/s IL-17RD (ng) -100 IL-17RD SUPPLEMENTARY FIGURE 1 0 20 50 80 100 IL-17RD (ng) S1a S1b S1c IL-17RD β-actin kda S1d - si sc Il17rd Il17ra rig/s15-574 - 458-361 bp S1f S1g S1h S1i S1j Supplementary Figure 1. Knockdown of IL-17RD enhances

More information

Supplementary information. The proton-sensing G protein-coupled receptor T-cell death-associated gene 8

Supplementary information. The proton-sensing G protein-coupled receptor T-cell death-associated gene 8 1 Supplementary information 2 3 The proton-sensing G protein-coupled receptor T-cell death-associated gene 8 4 (TDAG8) shows cardioprotective effects against myocardial infarction 5 Akiomi Nagasaka 1+,

More information

SUPPLEMENTARY RESULTS

SUPPLEMENTARY RESULTS SUPPLEMENTARY RESULTS Supplementary Table 1. hfpr1- Flpln-CHO hfpr2-flpln-cho pec 50 E max (%) Log( /K A) Log( /K A) N pec 50 E max (%) Log( /K A) Log( /K A) n ERK1/2 phosphorylation fmlp 9.0±0.6 80±7

More information

Supplementary Figure 1. Expression of phospho-sik3 in normal and osteoarthritic articular cartilage in the knee. (a) Semiserial histological sections

Supplementary Figure 1. Expression of phospho-sik3 in normal and osteoarthritic articular cartilage in the knee. (a) Semiserial histological sections Supplementary Figure 1. Expression of phospho-sik3 in normal and osteoarthritic articular cartilage in the knee. (a) Semiserial histological sections of normal cartilage were stained with safranin O-fast

More information

Nature Methods: doi: /nmeth.4257

Nature Methods: doi: /nmeth.4257 Supplementary Figure 1 Screen for polypeptides that affect cellular actin filaments. (a) Table summarizing results from all polypeptides tested. Source shows organism, gene, and amino acid numbers used.

More information

hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This

hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This SUPPLEMENTAL FIGURE LEGEND Fig. S1. Generation and characterization of. (A) Coomassie staining of soluble hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This protein was expressed

More information

Figure S1 Generation of γ-gt DTR transgenic mice. (A) Schematic construct of the transgene. (B)

Figure S1 Generation of γ-gt DTR transgenic mice. (A) Schematic construct of the transgene. (B) Figure S1 Generation of γ-gt DTR transgenic mice. (A) Schematic construct of the transgene. (B) PCR identified expected hhb-egf band (left panel) and HA tag band (right) in kidneys of transgenic (TG) mice

More information

SUPPLEMENTARY FIGURES

SUPPLEMENTARY FIGURES SUPPLEMENTARY FIGURES 1 Supplementary Figure 1, Adult hippocampal QNPs and TAPs uniformly express REST a-b) Confocal images of adult hippocampal mouse sections showing GFAP (green), Sox2 (red), and REST

More information

Supplementary Fig. 1. The Brown Norway rat has higher coronary flow compared to other rat strains. Publically available data for coronary flow

Supplementary Fig. 1. The Brown Norway rat has higher coronary flow compared to other rat strains. Publically available data for coronary flow Supplementary Fig. 1. The Brown Norway rat has higher coronary flow compared to other rat strains. Publically available data for coronary flow measured ex vivo on Langendorff apparatus under intrinsic

More information

Supplementary Figure 1

Supplementary Figure 1 VO (ml kg - min - ) VCO (ml kg - min - ) Respiratory exchange ratio Energy expenditure (cal kg - min - ) Locomotor activity (x count) Body temperature ( C) Relative mrna expression TA Sol EDL PT Heart

More information

SUPPLEMENTARY MATERIALS. IL-4 as a Repurposed Biological Drug for Myocardial Infarction through. Augmentation of Reparative Cardiac Macrophages:

SUPPLEMENTARY MATERIALS. IL-4 as a Repurposed Biological Drug for Myocardial Infarction through. Augmentation of Reparative Cardiac Macrophages: 1 SUPPLEMENTARY MATERIALS IL-4 as a Repurposed Biological Drug for Myocardial Infarction through Augmentation of Reparative Cardiac Macrophages: Proof-of-Concept Data in Mice Yusuke Shintani MD PhD, Tomoya

More information

SUPPLEMENTARY INFORMATION. Rett Syndrome Mutation MeCP2 T158A Disrupts DNA Binding, Protein Stability and ERP Responses

SUPPLEMENTARY INFORMATION. Rett Syndrome Mutation MeCP2 T158A Disrupts DNA Binding, Protein Stability and ERP Responses SUPPLEMENTARY INFORMATION Rett Syndrome Mutation T158A Disrupts DNA Binding, Protein Stability and ERP Responses Darren Goffin, Megan Allen, Le Zhang, Maria Amorim, I-Ting Judy Wang, Arith-Ruth S. Reyes,

More information

m 6 A mrna methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer

m 6 A mrna methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer SUPPLEMENTARY INFORMATION Articles https://doi.org/10.1038/s41556-018-0174-4 In the format provided by the authors and unedited. m 6 A mrna methylation regulates AKT activity to promote the proliferation

More information

Supplementary Figure (OH) 22 nanoparticles did not affect cell viability and apoposis. MDA-MB-231, MCF-7, MCF-10A and BT549 cells were

Supplementary Figure (OH) 22 nanoparticles did not affect cell viability and apoposis. MDA-MB-231, MCF-7, MCF-10A and BT549 cells were Supplementary Figure 1. Gd@C 82 (OH) 22 nanoparticles did not affect cell viability and apoposis. MDA-MB-231, MCF-7, MCF-10A and BT549 cells were treated with PBS, Gd@C 82 (OH) 22, C 60 (OH) 22 or GdCl

More information

p = formed with HCI-001 p = Relative # of blood vessels that formed with HCI-002 Control Bevacizumab + 17AAG Bevacizumab 17AAG

p = formed with HCI-001 p = Relative # of blood vessels that formed with HCI-002 Control Bevacizumab + 17AAG Bevacizumab 17AAG A.. Relative # of ECs associated with HCI-001 1.4 1.2 1.0 0.8 0.6 0.4 0.2 0.0 ol b p < 0.001 Relative # of blood vessels that formed with HCI-001 1.4 1.2 1.0 0.8 0.6 0.4 0.2 0.0 l b p = 0.002 Control IHC:

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 1.138/ncb3355 a S1A8 + cells/ total.1.8.6.4.2 b S1A8/?-Actin c % T-cell proliferation 3 25 2 15 1 5 T cells Supplementary Figure 1 Inter-tumoral heterogeneity of MDSC accumulation in mammary tumor

More information

SUPPLEMENTARY FIGURES

SUPPLEMENTARY FIGURES SUPPLEMENTARY FIGURES Supplementary Figure 1: Chemokine receptor expression profiles of CCR6 + and CCR6 - CD4 + IL-17A +/ex and Treg cells. Quantitative PCR analysis of chemokine receptor transcript abundance

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Pleiotrophin Regulates the Expansion and Regeneration of Hematopoietic Stem Cells Heather A Himburg 1, Garrett G Muramoto 1 *, Pamela Daher 1*, Sarah K Meadows 1, J. Lauren Russell

More information

7SK ChIRP-seq is specifically RNA dependent and conserved between mice and humans.

7SK ChIRP-seq is specifically RNA dependent and conserved between mice and humans. Supplementary Figure 1 7SK ChIRP-seq is specifically RNA dependent and conserved between mice and humans. Regions targeted by the Even and Odd ChIRP probes mapped to a secondary structure model 56 of the

More information

Supplementary Figure S1 Enlarged coronary artery branches in Edn1-knockout mice. a-d, Coronary angiography by ink injection in wild-type (a, b) and

Supplementary Figure S1 Enlarged coronary artery branches in Edn1-knockout mice. a-d, Coronary angiography by ink injection in wild-type (a, b) and Supplementary Figure S1 Enlarged coronary artery branches in Edn1-knockout mice. a-d, Coronary angiography by ink injection in wild-type (a, b) and Edn1-knockout (Edn1-KO) (c, d) hearts. The boxed areas

More information

Supplementary Table 1. The primers used for quantitative RT-PCR. Gene name Forward (5 > 3 ) Reverse (5 > 3 )

Supplementary Table 1. The primers used for quantitative RT-PCR. Gene name Forward (5 > 3 ) Reverse (5 > 3 ) 770 771 Supplementary Table 1. The primers used for quantitative RT-PCR. Gene name Forward (5 > 3 ) Reverse (5 > 3 ) Human CXCL1 GCGCCCAAACCGAAGTCATA ATGGGGGATGCAGGATTGAG PF4 CCCCACTGCCCAACTGATAG TTCTTGTACAGCGGGGCTTG

More information