Analysis, feature extraction and compression of ECG signal with DWT technique using NI-BIOMEDICAL WORKBENCH & LABVIEW

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1 Analysis, feature extraction and compression of ECG signal with DWT technique using NI-BIOMEDICAL WORKBENCH & LABVIEW Anju Malik Department of Electronics & communication Engineering BPSMV Khanpur Kalan, Sonipat, Haryana Rajender Kumar Department of Electronics & communication Engineering BPSMV Khanpur Kalan, Sonipat, Haryana Abstract - Lab VIEW and the signal processing-related toolkits can provide a robust and efficient environment and tools for resolving ECG (Electrocardiogram) signal dispensation difficulty. This term paper demonstrate how to use these advance powerful tools in denoising, extracting, analyzing, ECG signals simply and suitably not only in heart illness diagnosis but also in ECG signal processing research. This paper presents study and analysis of ECG signal using LABVIEW (Advance signal processing toolkit as well as biomedical workbench 2014). This paper also discuss on Heart rate monitoring and ECG signal compression using DWT (discrete wavelet transform) technique. Data is imported from online data bank files, such as Physio bank MIT-BIH record to the application in this tool kit for examination. The proposed algorithm is executed in two steps. In the first stage, ECG indication is acquired which is after that followed by filtering the raw ECG signal to remove unwanted noises. Then the next stage focuses on extracting the features from the acquired ECG indication then it detects heart rate, heart rate standard deviation, QRS amplitude, QRS standard deviation, QRS width, PR-interval, QT-interval their onsets and offsets, as well as at last visualize and analyze the extraction outcome. Keywords: - ECG Signal, Feature Extraction, Discrete wavelet transform, NI-Biomedical workbench 2014 and LABVIEW. I. INTRODUCTION Human heart is divided into four main chambers called atria and ventricles both with their left as well as right instances. Those chambers together form a biological pump for propelling the blood throughout the body. Moreover those four observable sections there are several other parts of the heart In various cases we moreover use another peak called U. The normal heart rate is beats per minute. Heart rate slower than 60 beats per minute is called bradycardia as well as a heart rate faster than 100 beats per minute is called tachycardia. for very specialized functions like separating atria From ventricles, slow inclination circulation, Very fast impulse propagation etc. all of them performing particular tasks, ensuring that blood flows suitably and efficiently all the way through the body. When electrical impulse propagates during heart and all these particular cells, ECG electrodes pick up that Impulse in various directions and speed. In this way ECG waveforms are formed [1-2]. The ECG signal is characterized Figure 1.1: ECG signal representation [4] by five peaks and valleys labelled by the letters P, Q, R, S, T. RES Publication 2012 Page 29

2 An ECG signal representation is shown in Fig.1.1. [4] The main objective of data compression is to reduce the number of bits so that it reduces the cost of conduction and increases storage capability. The various sections of this paper are as follows. Section 2 analysis of ECG signal. This is followed by NI-Biomedical workbench ECG signal analysis and compression in section 3. In last section, conclusion is drawn about the result. II. ANALYSIS OF ECG SIGNAL The Lab VIEW Wavelet Analysis Tools give a collection of Wavelet Analysis VIs that assists you in dispensation signals in the LabVIEW environment. You can use the Continuous Wavelet VIs, Discrete Wavelet Vis and Wavelet Packet VIs to execute the continuous wavelet transform, the discrete wavelet transform, the integer wavelet transform. The Wavelet Analysis Tools contain Express VIs that provides interfaces for signal processing and analysis. This Express VIs enables you to identify parameters and settings for an analysis and observe the results without delay. For illustration, the Wavelet Denoise Express VI graphs both the original as well as denoised signals. You can see the denoised signal instantly as you choose a wavelet, identify a threshold, and set other parameters. Analysis of ECG signal includes ECG signal generation, feature extraction and pre-processing in ECG signals. Noise Removal for Pre-processing A. Pre-processing Pre-processing Electrocardiogram signals helps to eliminate contaminants starting the ECG signals. Electrocardiogram contaminants are confidential into the subsequent categories [6]: Power line interference Patient electrode motion artefacts Electrode pop or contact noise Baseline wandering Electromyography (EMG) noise Removing Baseline Wandering The wavelet transform is an effectual way to remove signals inside specific sub-bands. The Lab view ASPT provides the WA Detrend VI which can take away the low frequency trend of a signal. Fig 2.2 Using the WA Detrend VI to remove baseline wandering This process uses the Daubechies6 (db06) wavelet because this wavelet is similar to the real ECG signal. Detection of Peaks Detection of onset offset of Individual peaks Estimation of ECG clinical signatures Fig 2.3 ECG Signal before and after removing baseline wandering Clinical diagnosis by physician Fig 2.1General steps for ECG Signal Analysis RES Publication 2012 Page 30

3 B. Feature Extraction For the intention of diagnosis, often we need to take out various features from the preprocessed ECG data, including QRS intervals, PR intervals, QRS amplitudes and QT intervals, etc. These features give information about the heart rate, the conduction velocity, the circumstance of tissues within the heart as well as a variety of abnormalities [8]. Fig 2.7 Front Panel for Heart Rate Monitoring III. NI- BIOMEDICAL WORKBENCH ECG SIGNAL ANALYSIS AND COMPRESSION Fig 2.4 Implementation of QRS Detection Fig 3.1 LABVIEW Biomedical Workbench 2014 Fig 2.5 Original ECG, ECG after Detrending, Denoising and QRS parameters detection The pre-processed ECG signal is used to identify position of R impression. After that, all extra features determination is extracted using innovative signal, because the signal enhancement may transform these features [10]. Heart Rate monitoring The LABVIEW Biomedical Toolkit has the ability for generate ECG signals from exterior files that (ECG data) can be taken from MIT-BIH Arrhythmia Database. 1. ECG Feature Extractor a. Imports ECG signals from different file types. See Biosignal Viewer for file formats supported. b. Imports ECG signals from phsiobank ATM (MIT- BIH ECG database). c. Integrates robust extraction algorithms to identify ECG features, such as the QRS Complex, T wave and P wave. d. Saves ECG features to TDMS file. e. Transfers RR distance data to HRV Analysis application. f. Exports ECG features reports for printing. Fig 2.6 Back Panel for Heart Rate Monitoring RES Publication 2012 Page 31

4 Fig 3.2 ECG Feature Extractor Fig 3.5 Heart Rate Variability Analyzer Fig 3.3 ECG Feature Extractor with HR Histogram Fig 3.6 HRV Report ECG Compression ECG compression techniques can be categorized into: 1) direct time-domain techniques, 2) transformed frequency domain techniques and 3) parameters optimization techniques [11] Fig 3.4 ECG Feature Extractor Report 2. Heart Rate Variability (HRV) Analyzer a. Imports RR intervals from an electrocardiogram (ECG) file that the ECG Feature Extractor application generates or from a text file that contains RR intervals. b. Provides a variety of analysis methods for HRV analysis including Statistics (histogram), Poincare plot, FFT (Fast Fourier Transform) spectrum etc. c. Supports user-defined analysis methods. d. Exports heart rate variability measurements report for printing. A. Direct Signal Compression Techniques A direct technique performs the compression immediately on the ECG signal. These are besides known as time domain techniques. To obtain a high performance time domain compression algorithm, intellectual sample collection criteria should be used. This group includes AZTEC, TP and CORTES, modified AZTEC algorithms. [11] B. Transformed ECG Compression Methods Transform method, changes the time domain signal to the frequency or other domains and analyzes the power circulation. This group includes dissimilar transform techniques such as the Fourier transform, Cosine transform and further newly the wavelet transform. [12] RES Publication 2012 Page 32

5 C. Optimization Methods for ECG Compression Optimization technique minimizes the renovation factual error given a bound on the numeral of samples to be extracted or the class of the reconstructed signal toward is achieved [11]. ECG Compression using Discrete Wavelet Transform: Wavelets permit both time as well as frequency analysis of signals at the same time because of the reality that power of wavelet is determined in time and still possesses the signal like characteristics [12-13]. Compression Algorithm: Step 1: Downloading of ECG signal from MIT-BIH arrhythmia data base from Physiobank ATM. Step 2: Transform the original ECG signal using DWT. Step 3: To achieve an adaptive threshold compute the maximum value of the transformed coefficients. Step 4: Apply the threshold of a fix noise based on absolute maximum values of the transform coefficients. Step 5: Apply inverse discrete wavelet transform to get the reconstruct signal. Step 6: Calculation of Signal to Noise ratio (SNR). Fig 3.7 Block Diagram for ECG Compression using DWT Technique Fig 3.8 Front Panel for ECG Compression using DWT Technique IV. CONCLUSION The advanced analysis scheme accessible on the workstation is attractive invaluable to the practicing physician as well as researchers. Clinical applications and investigate studies simultaneously apply heart rate variability analysis results for statistical and frequency methods. From the results it can be concluded that as for by using the LABVIEW WA De trend virtual instrument and Wavelet Denoise express VI, wandering and all the irrelevant noise has been successfully removed from raw ECG signal. The advantage of LABVIEW (GPL) graphical programming language is that, it provides a vigorous along with well-organized environment and tool for generating very quick, less complex as well as useful algorithms. From the ECG compression results it can be concluded that as (SNR) signal to noise ratio is calculated to compress error which yields high data reduction and poor signal fidelity. For the future work the same data compression algorithm is to be implemented in FPGA using Verilog HDL. REFERENCES [1] G. D. Clifford, F. Azuaje, and P. McSharry, Advanced Methods And Tools for ECG Data Analysis. Norwood, MA, USA: Artech House, Inc., [2] A. Camm, T. L uscher, and P. Serruys, The ESC Textbook of Cardiovascular Medicine. OUP Oxford, [3] Fozzard HA, Haber E, Jennings RB, Katz AM, Morgan HI (eds.) (1991): The Heart and Cardiovascular System, 2193 Total excitation of the isolated human heart. Circulation 41 :( 6) [4] Sumi Thomas, Soniya Peter Study of Different ECG Signal Compression Techniques International Journal of Science and Research (IJSR) ISSN (Online): Index Copernicus Value (2013): 6.14 Impact Factor (2013): [5] Deepa Annamalai, S.Muthukrishnan Study and analysis of ECG signal using LABVIEW and Multisim International Journal of pure applied research in engineering and technology Research Article ISSN: X, IJPRET, 2014; Volume 2 (7): [6] Juan Pablo Martinez, Rute Almeida, Salvador Olmos,, A Wavelet Based ECG Delinator: Evaluation on standard data bases, IEEE RES Publication 2012 Page 33

6 Transactions on Biomedical Engineering. 2004, Vol 51, No (4), [7] Channappa Bhyri*, Kalpana.V, S.T.Hamde, and L.M.Waghmare Estimation of ECG features using LabVIEW technia International Journal of Computing Science and Communication Technologies, VOL. 2, NO. 1, July (ISSN ) [8] Mahmoodabadi, S.Z., Ahmadian, A., Abolhasani, M.D., Eslami, M. and Bidgoli, J.H ECG Feature Extraction Based on Multiresolution Wavelet Transform. Proceedings of the 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference (Shanghai, China, September 1-4, 2005) /05/$ IEEE. [9] LabVIEW 2014 Biomedical Toolkit Help Edition Date: June 2014 Part Number: B-01»View Product Info June 2014, B-01 [10] Jigar D. Shah, M. S. Panse, EEG purging using LABVIEW based wavelet analysis, National Conference on Computational Instrumentation CSIO Chandigarh, INDIA, pp.19-20, March,2010 [11] Prof. Mohammed Abo-Zahhad, ECG Signal Compression Using Discrete Wavelet Transform, Vice-Dean for Graduate Studies, Faculty of Engineering, University of Assiut, Egypt [12] Mrs.S.O.Rajankar and Dr. S.N. Talbar, An Optimized Transform for ECG Signal Compression, ACEEE Int. J. on Signal & Image Processing, Vol. 01, No. 03, Dec 2010 [13] Ruqaiya Khanam and Syed Naseem Ahmad, ECG Signal Compression for Diverse Transforms, ISSN (Paper) ISSN X (Online, Vol 2, No.5, 2012 RES Publication 2012 Page 34