Facile t-boc and FMOC Amino Acid Chiral Separations by HPLC

Size: px
Start display at page:

Download "Facile t-boc and FMOC Amino Acid Chiral Separations by HPLC"

Transcription

1 Facile t-bc and FMC Amino Acid Chiral Separations by PLC J. T. Lee, T. E. Beesley Advanced Separation Technologies 37 Leslie Court, P.. Box 297 Whippany, NJ USA Poster PLC 2002

2 Abstract Macrocyclic glycopeptide-based chiral stationary phases (CSPs) have become more popular due to their multimodal capability, broad selectivity and ruggedness. wing to their unique chiral ionic character, the enantiomer resolution of a wide variety of acids, bases and amphoteric racemates has been an easier task. Recently, with the advances of genomics/proteomics a huge demand for amino acids and peptides analysis has evolved. Specifically, the chiral analysis of N-blocked amino acids, i.e. t- BC and FMC, has become essential. There are three types of macrocyclic stationary phases suitable for this type of analysis. The unique phenomenon of complementary separations among these chiral stationary phases (vancomycin, teicoplanin, ristocetin A) renders them very effective tools for separating a wide variety of amino acids and N-blocked amino acids. A large number of t-bc and FMC amino acids have been tested, and baseline resolution is easily achieved for every racemate tested. In some cases, the selectivity/resolution can be greater than 5. The method development protocol and optimization methods are very straightforward in two mobile phase types, the polar organic phase and the reversed phase mode. The polar organic and reversed phase systems with the use of volatile buffers like ammonium trifluoroacetate and/or ammonium acetate are very compatible with LC/MS and LC/MS/MS platforms. The chiral recognition mechanisms involved in this type of chromatography will be proposed along with the rationale for optimization.

3 Proposed Structures of Glycopeptide CSPs 3 C N N 2 N N A Cl N N B Cl C 3 N 2 C 3 C N N C 2 N C 3 N N N CC 3 A B N C N C 3 D N C 3 N 2 Vancomycin Ristocetin A

4 Proposed Structures of Glycopeptide CSPs NR C 2 NCC 3 N C C 2 Cl N B N A N C Cl N N D N 2 C 2 Teicoplanin

5 N-FMC (9-Fluorenylmethyl Chlorophormate) Amino Acids Column: CIRBITIC T in Reversed Phase Mode Peak 1: 6.77 Peak 2: Peak 1: 5.55 Peak 2: 6.73 Peak 1: 7.87 Peak 2: Alanine Aspartic Acid Glutamic Acid Mobile Phase: 40/60: Me/0.1% TEAA, p=4.1

6 N-FMC (9-Fluorenylmethyl Chloroformate) Amino Acids Column: CIRBITIC T in Reversed Phase Mode Peak 1: 6.60 Peak 2: Peak 1: 5.98 Peak 2: Peak 1: 5.87 Peak 2: Norleucine Norvaline Methionine Mobile Phase: 40/60: Me/0.1% TEAA, p=4.1

7 N-FMC (9-Fluorenethylmethyl Chloroformate) Amino Acids Column: CIRBITIC R in Polar rganic Mode Peak 1: 2.95 Peak 2: 4.40 Peak 1: 8.11 Peak 2: Peak 1: 4.05 Peak 2: 5.16 Alanine Glutamine Isoleucine Mobile Phase: 100/0.1%: Me/N4TFA (LC/MS Compatible)

8 N-FMC (9-Fluorenethylmethyl Chloroformate) Amino Acids Column: CIRBITIC R in Polar rganic Mode Peak 1: 4.20 Peak 2: 5.61 Peak 1: 4.51 Peak 2: 7.17 Peak 1: 5.4 Peak 2: 9.90 Norleucine Norvaline Methionine Mobile Phase: 100/0.1%: Me/N4TFA (LC/MS Compatible)

9 N-FMC (9-Fluorenylmethyl Chloroformate) Amino Acids Column: CIRBITIC R in Reversed Phase Mode Peak 1: 7.66 Peak 2: 9.95 Peak 1: 5.79 Peak 2: 9.87 Peak 1: 6.22 Peak 2: 8.78 Asparagine Glutamine Serine Mobile Phase: 30/70: Me/20mM N4Ac (LC/MS Compatible)

10 N-FMC (9-Fluorenethylmethyl Chloroformate) Amino Acids Column: CIRBITIC R in Reversed Phase Mode Peak 1: 4.13 Peak 2: 7.44 Peak 1: 3.80 Peak 2: 7.68 Peak 1: 3.35 Peak 2: 6.07 Alanine Methionine Phenylalanine Mobile Phase: 50/50: Me/20mM N4Ac (LC/MS Compatible)

11 p Effect Column: CIRBITIC T FMC Methionine FMC Peak 1: 6.65 Peak 2: FMC Peak 1: 4.57 Peak 2: FMC + FMC-L-Methionine Peak 1: 3.68 Peak 2: 9.67 p 4.1 p 5.0 p 5.5 Mobile phase: 40/60: Me/20mM N4Ac

12 p Effect Column:CIRBITIC T FMC Aspartic acid Peak 1: 4.41 Peak 2: 5.38 Peak 1: 3.14 Peak 2: 3.60 FMC FMC p 4.1 p 5.0 Mobile Phase: 40/60: Me/20mM N4Ac

13 CIRBITIC T (Reversed Phase Mode) LC LC/MS Compatible Mobile Phase Example: FMC Alanine Mobile Phase: Me/Buffer*, 40/60 Peak 1: 6.77 Peak 2: Peak 1: 6.56 Peak 2: 9.41 *Buffer: 0.1% TEAA, p=4.1 *Buffer: 20mM N4Ac, p=4.1

14 CIRBITIC T (Reversed Phase Mode) LC LC/MS Compatible Mobile Phase Example: FMC Leucine Me/ Buffer*, 40/60 Peak 1: 6.10 Peak 2: Peak 1: 6.97 Peak 2: *Buffer: 0.1% TEAA, p=4.1 *Buffer: 20mM N4Ac, p=4.1

15 CIRBITIC T vs R FMC Aspartic acid FMC Peak 1: 3.14 Peak 2: 3.60 Peak 1: 7.36 Peak 2: 9.62 Mobile phase: 40/60: Me/20mM N4Ac, p=5.0

16 N-t-BC Amino Acids Column: CIRBITIC R Peak 1: 6.26 Peak 2: 8.74 Peak 1: 7.79 Peak 2: 8.32 Peak 1: 6.13 Peak 2: 7.55 Alanine Asparagine Glutamine Mobile Phase: 20/80: Me/0.1 % TEAA, p=4.1

17 N-t-BC Amino Acids Column:CIRBITIC R Peak 1: 8.01 Peak 2: 9.24 Peak 1: 5.64 Peak 2: 6.42 Peak 1: 7.33 Peak 2: 8.43 Isoleucine Serine Valine Mobile Phase: 20/80: Me/0.1% TEAA, p=4.1

18 N-t-BC Amino Acids Column: CIRBITIC R Peak 1: 5.43 Peak 2: 6.32 Peak 1: 6.06 Peak 2: Peak 1: 4.84 Peak 2: istidine Phenylalanine Tryptophan Mobile Phase: 20/80: Me/0.1% TEAA, p=6.0

19 N-t-BC Amino Acids Column: CIRBITIC T Peak 1: 4.36 Peak 2: 5.10 Peak 1: 8.66 Peak 2: Peak 1: 4.23 Peak 2: 4.69 Alanine Phenylalanine Glutamine Mobile Phase: 10/90: Me/0.1% TEAA, p=4.1

20 N-t-BC Amino Acids Column: CIRBITIC T Peak 1: 4.43 Peak 2: 8.62 Peak 1: 4.87 Peak 2: Methionine Phenylglycine Mobile Phase: 20/80: Me/0.1% TEAA, p=4.1

21 Conclusions 1. f the three macrocyclic glycopeptides (CSPs) investigated, CIRBITIC T (Teicoplanin) and CIRBITIC R (Ristocetin A) are the best choices for FMC and t-bc amino acids. 2. For FMC amino acids, both reversed phase and polar organic mode work pretty well in most cases on CIRBITIC R while reversed phase is the best choice for CIRBITIC T. 3. For t-bc amino acids, reversed phase mode is the viable choice for both CIRBITIC T and R. 4. Both reversed phase and polar organic phase systems can be converted to LC/MS platforms. 5. It appears that carboxylate group of the analytes is the key interaction site with chiral amino group of the CSPs.

Level and activity of D-amino acids in mouse brain tissue and blood

Level and activity of D-amino acids in mouse brain tissue and blood 1 2 3 4 5 6 7 8 9 10 11 12 13 14 SUPPLEMENTARY INFORMATION Level and activity of D-amino acids in mouse brain tissue and blood Choyce A. Weatherly 1, Siqi Du 1, Curran Parpia 1, Polan T. Santos 2, Adam

More information

LC-MS Analysis of Amino Acids on a Novel Mixed-Mode HPLC Column

LC-MS Analysis of Amino Acids on a Novel Mixed-Mode HPLC Column Liquid Chromatography Mass Spectrometry SSI-LCMS-022 LC-MS Analysis of Amino Acids on a ovel Mixed-Mode PLC Column LCMS-8040 Background There are four established methods for analyzing amino acids: prelabeled,

More information

Lecture 3: 8/24. CHAPTER 3 Amino Acids

Lecture 3: 8/24. CHAPTER 3 Amino Acids Lecture 3: 8/24 CHAPTER 3 Amino Acids 1 Chapter 3 Outline 2 Amino Acid Are Biomolecules and their Atoms Can Be Visualized by Two Different Ways 1) Fischer projections: Two dimensional representation of

More information

Analysis of Amino Acids Derived Online Using an Agilent AdvanceBio AAA Column

Analysis of Amino Acids Derived Online Using an Agilent AdvanceBio AAA Column Application Note Pharmaceutical and Food Testing Analysis of Amino Acids Derived Online Using an Agilent AdvanceBio AAA Column Author Lu Yufei Agilent Technologies, Inc. Abstract A liquid chromatographic

More information

Chemical Nature of the Amino Acids. Table of a-amino Acids Found in Proteins

Chemical Nature of the Amino Acids. Table of a-amino Acids Found in Proteins Chemical Nature of the Amino Acids All peptides and polypeptides are polymers of alpha-amino acids. There are 20 a- amino acids that are relevant to the make-up of mammalian proteins (see below). Several

More information

Amino acids. (Foundation Block) Dr. Essa Sabi

Amino acids. (Foundation Block) Dr. Essa Sabi Amino acids (Foundation Block) Dr. Essa Sabi Learning outcomes What are the amino acids? General structure. Classification of amino acids. Optical properties. Amino acid configuration. Non-standard amino

More information

Amino Acids. Amino Acids. Fundamentals. While their name implies that amino acids are compounds that contain an NH. 3 and CO NH 3

Amino Acids. Amino Acids. Fundamentals. While their name implies that amino acids are compounds that contain an NH. 3 and CO NH 3 Fundamentals While their name implies that amino acids are compounds that contain an 2 group and a 2 group, these groups are actually present as 3 and 2 respectively. They are classified as α, β, γ, etc..

More information

Impact of Reversed-Phase Chiral Chromatography on the LC-MS Analysis of Drugs in Biological Fluids

Impact of Reversed-Phase Chiral Chromatography on the LC-MS Analysis of Drugs in Biological Fluids Impact of Reversed-Phase Chiral Chromatography on the LC-MS Analysis of Drugs in Biological Fluids David S. Bell, Carmen T. Santasania, Jennifer Claus, Wayne K. Way, and Craig R. Aurand Supelco, Div. of

More information

So where were we? But what does the order mean? OK, so what's a protein? 4/1/11

So where were we? But what does the order mean? OK, so what's a protein? 4/1/11 So where were we? We know that DNA is responsible for heredity Chromosomes are long pieces of DNA DNA turned out to be the transforming principle We know that DNA is shaped like a long double helix, with

More information

AMINO ACIDS STRUCTURE, CLASSIFICATION, PROPERTIES. PRIMARY STRUCTURE OF PROTEINS

AMINO ACIDS STRUCTURE, CLASSIFICATION, PROPERTIES. PRIMARY STRUCTURE OF PROTEINS AMINO ACIDS STRUCTURE, CLASSIFICATION, PROPERTIES. PRIMARY STRUCTURE OF PROTEINS Elena Rivneac PhD, Associate Professor Department of Biochemistry and Clinical Biochemistry State University of Medicine

More information

Fundamentals of Organic Chemistry CHEM 109 For Students of Health Colleges

Fundamentals of Organic Chemistry CHEM 109 For Students of Health Colleges Fundamentals of Organic Chemistry CHEM 109 For Students of Health Colleges Credit hrs.: (2+1) King Saud University College of Science, Chemistry Department CHEM 109 CHAPTER 9. AMINO ACIDS, PEPTIDES AND

More information

Activities for the α-helix / β-sheet Construction Kit

Activities for the α-helix / β-sheet Construction Kit Activities for the α-helix / β-sheet Construction Kit The primary sequence of a protein, composed of amino acids, determines the organization of the sequence into the secondary structure. There are two

More information

Amino acids. Dr. Mamoun Ahram Summer semester,

Amino acids. Dr. Mamoun Ahram Summer semester, Amino acids Dr. Mamoun Ahram Summer semester, 2017-2018 Resources This lecture Campbell and Farrell s Biochemistry, Chapters 3 (pp.66-76) General structure (Chiral carbon) The amino acids that occur in

More information

Analysis of free amino acids in tobacco with a new LC/MS/MS. procedure. S. C. Moldoveanu R.J. Reynolds Tobacco Co.

Analysis of free amino acids in tobacco with a new LC/MS/MS. procedure. S. C. Moldoveanu R.J. Reynolds Tobacco Co. Analysis of free amino acids in tobacco with a new LC/MS/MS procedure S. C. Moldoveanu R.J. Reynolds Tobacco Co. Jeff Zhu Eurofins Background A considerable number of analytical methods are reported in

More information

Quantitative Analysis of Underivatized Amino Acids in Plant Matrix by Hydrophilic Interaction Chromatography (HILIC) with LC/MS Detection

Quantitative Analysis of Underivatized Amino Acids in Plant Matrix by Hydrophilic Interaction Chromatography (HILIC) with LC/MS Detection Application Note Food Testing, Metabolomics, Agricultural Chemistry, Environmental Quantitative Analysis of Underivatized Amino Acids in Plant Matrix by Hydrophilic Interaction Chromatography (HILIC) with

More information

Proteins consist in whole or large part of amino acids. Simple proteins consist only of amino acids.

Proteins consist in whole or large part of amino acids. Simple proteins consist only of amino acids. Today we begin our discussion of the structure and properties of proteins. Proteins consist in whole or large part of amino acids. Simple proteins consist only of amino acids. Conjugated proteins contain

More information

PHAR3316 Pharmacy biochemistry Exam #2 Fall 2010 KEY

PHAR3316 Pharmacy biochemistry Exam #2 Fall 2010 KEY 1. How many protons is(are) lost when the amino acid Asparagine is titrated from its fully protonated state to a fully deprotonated state? A. 0 B. 1 * C. 2 D. 3 E. none Correct Answer: C (this question

More information

Gentilucci, Amino Acids, Peptides, and Proteins. Peptides and proteins are polymers of amino acids linked together by amide bonds CH 3

Gentilucci, Amino Acids, Peptides, and Proteins. Peptides and proteins are polymers of amino acids linked together by amide bonds CH 3 Amino Acids Peptides and proteins are polymers of amino acids linked together by amide bonds Aliphatic Side-Chain Amino Acids - - H CH glycine alanine 3 proline valine CH CH 3 - leucine - isoleucine CH

More information

Analysis of L- and D-Amino Acids Using UPLC Yuta Mutaguchi 1 and Toshihisa Ohshima 2*

Analysis of L- and D-Amino Acids Using UPLC Yuta Mutaguchi 1 and Toshihisa Ohshima 2* Analysis of L- and D-Amino Acids Using UPLC Yuta Mutaguchi 1 and Toshihisa Ohshima 2* 1 Department of Biotechnology, Akita Prefectural University, Akita City, Japan; 2 Department of Biomedical Engineering,

More information

1. Describe the relationship of dietary protein and the health of major body systems.

1. Describe the relationship of dietary protein and the health of major body systems. Food Explorations Lab I: The Building Blocks STUDENT LAB INVESTIGATIONS Name: Lab Overview In this investigation, you will be constructing animal and plant proteins using beads to represent the amino acids.

More information

9/6/2011. Amino Acids. C α. Nonpolar, aliphatic R groups

9/6/2011. Amino Acids. C α. Nonpolar, aliphatic R groups Amino Acids Side chains (R groups) vary in: size shape charge hydrogen-bonding capacity hydrophobic character chemical reactivity C α Nonpolar, aliphatic R groups Glycine (Gly, G) Alanine (Ala, A) Valine

More information

Biomolecules: amino acids

Biomolecules: amino acids Biomolecules: amino acids Amino acids Amino acids are the building blocks of proteins They are also part of hormones, neurotransmitters and metabolic intermediates There are 20 different amino acids in

More information

Metabolic Classification of the Amino Acids

Metabolic Classification of the Amino Acids Metabolic Classification of the Amino Acids *Essential and Non-essential * Glucogenic and Ketogenic 1 Essential Amino Acids Of the 20 amino acids that make up proteins 10 of them can be synthesized by

More information

1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids

1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids Amino acids 1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids 5-To understand amino acids synthesis Amino

More information

1. (38 pts.) 2. (25 pts.) 3. (15 pts.) 4. (12 pts.) 5. (10 pts.) Bonus (12 pts.) TOTAL (100 points)

1. (38 pts.) 2. (25 pts.) 3. (15 pts.) 4. (12 pts.) 5. (10 pts.) Bonus (12 pts.) TOTAL (100 points) Moorpark College Chemistry 11 Spring 2010 Instructor: Professor Torres Examination #5: Section Five May 4, 2010 ame: (print) ame: (sign) Directions: Make sure your examination contains TWELVE total pages

More information

Amino acids. You are required to know and identify the 20 amino acids : their names, 3 letter abbreviations and their structures.

Amino acids. You are required to know and identify the 20 amino acids : their names, 3 letter abbreviations and their structures. Amino acids You are required to know and identify the 20 amino acids : their names, 3 letter abbreviations and their structures. If you wanna make any classification in the world, you have to find what

More information

FRAMINGHAM HEART STUDY CODING MANUAL Metabolomics (Hilic - installment 1)

FRAMINGHAM HEART STUDY CODING MANUAL Metabolomics (Hilic - installment 1) FRAMINGHAM HEART STUDY CODING MANUAL Metabolomics (Hilic - installment 1) COHORT: Offspring TIME INTERVAL: Exam 5 DATASET NAME: l_mtbli1_ex05_1_0610s # OBSERVATIONS: 1075 High throughput metabolite profiling

More information

Properties of amino acids in proteins

Properties of amino acids in proteins Properties of amino acids in proteins one of the primary roles of DNA (but far from the only one!!!) is to code for proteins A typical bacterium builds thousands types of proteins, all from ~20 amino acids

More information

Tomoko Tanahashi 1, Yasushi Tsuchihashi 3*, Akiyo K. Sakamiya 1 1, 2. and Takeo Yano

Tomoko Tanahashi 1, Yasushi Tsuchihashi 3*, Akiyo K. Sakamiya 1 1, 2. and Takeo Yano Metabolomic approach using ultra-high-performance liquid chromatography-mass spectrometry: Quantitative amino acid analysis and characterization of four species of marine fish, and a cuttlefish Tomoko

More information

COO - l. H 3 N C a H l R 1

COO - l. H 3 N C a H l R 1 COO - l + H 3 N C a H l R 1 Amino acids There are 20 standard amino acids. All proteins are built from the same amino acids. The most important criteria for classification is affinity to water: hydrophilic

More information

A Chemical Look at Proteins: Workhorses of the Cell

A Chemical Look at Proteins: Workhorses of the Cell A Chemical Look at Proteins: Workhorses of the Cell A A Life ciences 1a Lecture otes et 4 pring 2006 Prof. Daniel Kahne Life requires chemistry 2 amino acid monomer and it is proteins that make the chemistry

More information

Protein Folding LARP

Protein Folding LARP Protein Folding LARP Version: 1.0 Release: April 2018 Amplyus 2018 minipcr TM Protein Folding LARP (Live Action Role Play) Summary Materials In this activity, students will role play to make a folded protein

More information

For questions 1-4, match the carbohydrate with its size/functional group name:

For questions 1-4, match the carbohydrate with its size/functional group name: Chemistry 11 Fall 2013 Examination #5 PRACTICE 1 ANSWERS For the first portion of this exam, select the best answer choice for the questions below and mark the answers on your scantron. Then answer the

More information

SeQuant ZIC -HILIC For all who expect more...

SeQuant ZIC -HILIC For all who expect more... SeQuant ZIC -ILIC For all who expect more... The better choice for PLC and LC/MS of all types of polar and hydrophilic compounds EMD Millipore Corp. is a subsidiary of Merck KGaA, Darmstadt, Germany Poor

More information

Lecture 4. Grouping Amino Acid 7/1/10. Proteins. Amino Acids. Where Are Proteins Located. Nonpolar Amino Acids

Lecture 4. Grouping Amino Acid 7/1/10. Proteins. Amino Acids. Where Are Proteins Located. Nonpolar Amino Acids Proteins Lecture 4 Proteins - Composition of Proteins (Amino Acids) Chapter 21 ection 1-6! Proteins are compounds of high molar mass consisting almost entirely of amino acid chain(s)! Molar masses range

More information

Amino Acid Analyzer AAA400

Amino Acid Analyzer AAA400 Amino Acid Analyzer AAA400 Determination of amino acid of hydrolyzates (food and feed) Column: LG ANB OSTION 3.6x340 12μm Eluents: sodium-citrate buffers, 0.2 M NaOH Aspartic Acid, Threonine, Serine, Glutamic

More information

Amino acids. Dr. Mamoun Ahram and Dr. Diala Abu-Hassan Summer semester,

Amino acids. Dr. Mamoun Ahram and Dr. Diala Abu-Hassan Summer semester, Amino acids Dr. Mamoun Ahram and Dr. Diala Abu-Hassan Summer semester, 2017-2018 dr.abuhassand@gmail.com Resources This lecture Campbell and Farrell s Biochemistry, Chapters 3 (pp.66-76) General structure

More information

CS612 - Algorithms in Bioinformatics

CS612 - Algorithms in Bioinformatics Spring 2016 Protein Structure February 7, 2016 Introduction to Protein Structure A protein is a linear chain of organic molecular building blocks called amino acids. Introduction to Protein Structure Amine

More information

Introduction to Peptide Sequencing

Introduction to Peptide Sequencing Introduction to Peptide equencing Quadrupole Ion Traps tructural Biophysics Course December 3, 2014 12/8/14 Introduction to Peptide equencing - athan Yates 1 Why are ion traps used to sequence peptides?

More information

Section 1 Proteins and Proteomics

Section 1 Proteins and Proteomics Section 1 Proteins and Proteomics Learning Objectives At the end of this assignment, you should be able to: 1. Draw the chemical structure of an amino acid and small peptide. 2. Describe the difference

More information

Reactions and amino acids structure & properties

Reactions and amino acids structure & properties Lecture 2: Reactions and amino acids structure & properties Dr. Sameh Sarray Hlaoui Common Functional Groups Common Biochemical Reactions AH + B A + BH Oxidation-Reduction A-H + B-OH + energy ª A-B + H

More information

(a) (i) Describe how the production and action of interferon differs from the production and action of lysozyme. (3)

(a) (i) Describe how the production and action of interferon differs from the production and action of lysozyme. (3) 1 Histamine and the proteins interferon and lysozyme are involved in the non-specific responses to infection. (a) (i) escribe how the production and action of interferon differs from the production and

More information

[NOTE The relative retention times for calcitonin salmon and calcitonin salmon related compound A Change to read:

[NOTE The relative retention times for calcitonin salmon and calcitonin salmon related compound A Change to read: . Mode: Revision Bulletin Official April 1, 2012 Calcitonin Salmon 1 LC Calcitonin Salmon Detector: UV 220 nm Column: 4.6-mm 25-cm; packing L1 Column temperature: 65 Flow rate: 1 ml/min Injection volume:

More information

The LC Column Playbook

The LC Column Playbook The LC Column Playbook Mark Powell Applications Engineer Technical Support 1 Overview How do we achieve our goal: Resolution? Efficiency Particle size Column length Selectivity Bonded phase Mobile phase

More information

Objective: You will be able to explain how the subcomponents of

Objective: You will be able to explain how the subcomponents of Objective: You will be able to explain how the subcomponents of nucleic acids determine the properties of that polymer. Do Now: Read the first two paragraphs from enduring understanding 4.A Essential knowledge:

More information

PROTEIN. By: Shamsul Azahari Zainal Badari Department of Resource Management and Consumer Studies Faculty of Human Ecology UPM

PROTEIN. By: Shamsul Azahari Zainal Badari Department of Resource Management and Consumer Studies Faculty of Human Ecology UPM PROTEIN By: Shamsul Azahari Zainal Badari Department of Resource Management and Consumer Studies Faculty of Human Ecology UPM OBJECTIVES OF THE LECTURE By the end of this lecture, student can: Define

More information

0010 Amino Acid Analysis - 40 Plasma

0010 Amino Acid Analysis - 40 Plasma 770.446.5483 770.441.2237 This report contains reference range adjustments from routine revalidation procedures. It also contains the following three upgrades: 1) The amino acids have been reorganized

More information

Investigating GCxGC separations using selective column chemistry and compound derivatization pairings for common metabolomics chemical compounds

Investigating GCxGC separations using selective column chemistry and compound derivatization pairings for common metabolomics chemical compounds Investigating GCxGC separations using selective column chemistry and compound derivatization pairings for common metabolomics chemical compounds Julie Kowalski, Michelle Misselwitz and Jack Cochran Restek

More information

H 2 C H 2 N C CH O N C CH 3 CH 2 H O. aspartame

H 2 C H 2 N C CH O N C CH 3 CH 2 H O. aspartame 1 The addition of sucrose, table sugar, to food and drink has been linked to the increased risk of obesity and insulin resistance. Aspartame is used as an alternative to sugar. The structure of aspartame

More information

For questions 1-4, match the carbohydrate with its size/functional group name:

For questions 1-4, match the carbohydrate with its size/functional group name: Chemistry 11 Fall 2013 Examination #5 PRACTICE 1 For the first portion of this exam, select the best answer choice for the questions below and mark the answers on your scantron. Then answer the free response

More information

Practice Problems 3. a. What is the name of the bond formed between two amino acids? Are these bonds free to rotate?

Practice Problems 3. a. What is the name of the bond formed between two amino acids? Are these bonds free to rotate? Life Sciences 1a Practice Problems 3 1. Draw the oligopeptide for Ala-Phe-Gly-Thr-Asp. You do not need to indicate the stereochemistry of the sidechains. Denote with arrows the bonds formed between the

More information

Moorpark College Chemistry 11 Fall Instructor: Professor Gopal. Examination # 5: Section Five May 7, Name: (print)

Moorpark College Chemistry 11 Fall Instructor: Professor Gopal. Examination # 5: Section Five May 7, Name: (print) Moorpark College Chemistry 11 Fall 2013 Instructor: Professor Gopal Examination # 5: Section Five May 7, 2013 Name: (print) Directions: Make sure your examination contains TEN total pages (including this

More information

SeQuant ZIC -HILIC For all who expect more...

SeQuant ZIC -HILIC For all who expect more... SeQuant ZIC -ILIC For all who expect more... The better choice for PLC and LC/MS of all types of polar and hydrophilic compounds EMD Millipore is a division of Merck KGaA, Darmstadt, Germany Poor retention

More information

CHAPTER 29 HW: AMINO ACIDS + PROTEINS

CHAPTER 29 HW: AMINO ACIDS + PROTEINS CAPTER 29 W: AMI ACIDS + PRTEIS For all problems, consult the table of 20 Amino Acids provided in lecture if an amino acid structure is needed; these will be given on exams. Use natural amino acids (L)

More information

Quantitative analysis of hydrophilic metabolite using ion-paring chromatography with a high-speed triple quadrupole mass spectrometer

Quantitative analysis of hydrophilic metabolite using ion-paring chromatography with a high-speed triple quadrupole mass spectrometer Quantitative analysis of hydrophilic metabolite using ion-paring chromatography with a high-speed triple ASMS 2012 ThP11-251 Zanariah Hashim 1 ; Yudai Dempo1; Tairo Ogura 2 ; Ichiro Hirano 2 ; Junko Iida

More information

Annual Report ERNDIM-EQAS Quantitative Amino Acids 2004

Annual Report ERNDIM-EQAS Quantitative Amino Acids 2004 Annual Report ERNDIM-EQAS Quantitative Amino Acids 2004 1. Purpose The purpose of the ERNDIM External Quality Assurance Scheme for Quantitative Organic Acids is the monitoring of the analytical quality

More information

THE UNIVERSITY OF MANITOBA. DATE: Oct. 22, 2002 Midterm EXAMINATION. PAPER NO.: PAGE NO.: 1of 6 DEPARTMENT & COURSE NO.: 2.277/60.

THE UNIVERSITY OF MANITOBA. DATE: Oct. 22, 2002 Midterm EXAMINATION. PAPER NO.: PAGE NO.: 1of 6 DEPARTMENT & COURSE NO.: 2.277/60. PAPER NO.: PAGE NO.: 1of 6 GENERAL INSTRUCTIONS You must mark the answer sheet with pencil (not pen). Put your name and enter your student number on the answer sheet. The examination consists of multiple

More information

Improved Pirkie Type 1 Amide Type: Asymmetric carbon atoms are bonded directly with CONH group

Improved Pirkie Type 1 Amide Type: Asymmetric carbon atoms are bonded directly with CONH group 1 sur 6 26/06/2013 14:16 Special Merits of SUMICHIRAL OA 1.The large number of theoretical plates of the columns offer high resolution. 2.The packing materials have chemical stability and the columns have

More information

بسم هللا الرحمن الرحيم

بسم هللا الرحمن الرحيم بسم هللا الرحمن الرحيم Biochemistry Lec #1 Dr. Nafith AbuTarboush- (30.6.2014) Amino Acids 1 Campbell and Farrell s Biochemistry, Chapter 3 (pp.66-76) Introduction: Biochemistry is two courses; one is

More information

Biological systems interact, and these systems and their interactions possess complex properties. STOP at enduring understanding 4A

Biological systems interact, and these systems and their interactions possess complex properties. STOP at enduring understanding 4A Biological systems interact, and these systems and their interactions possess complex properties. STOP at enduring understanding 4A Homework Watch the Bozeman video called, Biological Molecules Objective:

More information

LC/MS Analysis of Various Hydrophilic Compounds Using a Polymer-Based Amino Column - Shodex TM HILICpak TM VG-50 2D

LC/MS Analysis of Various Hydrophilic Compounds Using a Polymer-Based Amino Column - Shodex TM HILICpak TM VG-50 2D LC/MS Analysis of Various Hydrophilic Compounds Using a Polymer-Based Amino Column - Shodex TM HILICpak TM VG-50 2D Introduction Components of pharmaceutical products and food products often include high

More information

0010 Amino Acids 40 Profile - Plasma

0010 Amino Acids 40 Profile - Plasma Accession #: Order #: G1234567 Date Collected: Date Received: 01/22/2013 Reference #: Patient: Date of Birth: 02/05/1962 Date of Report: Telephone: 7704464583 Ordering Physician: 1234 Main St. Anywhere,

More information

Amino acids. Ing. Petrová Jaroslava. Workshop on Official Controls of Feed AGR 46230, , Ankara. Turkey ÚKZÚZ - NRL RO Praha 1

Amino acids. Ing. Petrová Jaroslava. Workshop on Official Controls of Feed AGR 46230, , Ankara. Turkey ÚKZÚZ - NRL RO Praha 1 Amino acids Ing. Petrová Jaroslava Workshop on Official Controls of Feed AGR 46230, 6. 7. 12. 2011, Ankara. Turkey 6.12.2011 ÚKZÚZ - NRL RO Praha 1 Content of this presentation 1. Function of amino acids

More information

[ APPLICATION NOTE ] UPLC-MS/MS Analysis of 45 Amino Acids Using the Kairos Amino Acid Kit for Biomedical Research INTRODUCTION APPLICATION BENEFITS

[ APPLICATION NOTE ] UPLC-MS/MS Analysis of 45 Amino Acids Using the Kairos Amino Acid Kit for Biomedical Research INTRODUCTION APPLICATION BENEFITS UPLC-MS/MS Analysis of 45 Amino Acids Using the Kairos Amino Acid Kit for Biomedical Research Padhraic Rossiter, 1 Jaime Salcedo Dominguez, 1 Jennifer Warren, 1 Norma Breen, 1 Lisa Calton 2 1 Waters Corporation,

More information

Amino acids-incorporated nanoflowers with an

Amino acids-incorporated nanoflowers with an Amino acids-incorporated nanoflowers with an intrinsic peroxidase-like activity Zhuo-Fu Wu 1,2,+, Zhi Wang 1,+, Ye Zhang 3, Ya-Li Ma 3, Cheng-Yan He 4, Heng Li 1, Lei Chen 1, Qi-Sheng Huo 3, Lei Wang 1,*

More information

1.E+07 1.E+07 1.E+07 8.E+06 6.E+06 4.E+06 2.E+06

1.E+07 1.E+07 1.E+07 8.E+06 6.E+06 4.E+06 2.E+06 Wang et al., Metabolite Profiles and the Risk of Developing Diabetes Supplementary Figure 1 Mass Spec Intensity (a.u.) 2.E+07 2.E+07 1.E+07 5.E+06 x Leucine R=0.998 1.E+07 1.E+07 1.E+07 8.E+06 6.E+06 4.E+06

More information

I) Choose the best answer: 1- All of the following amino acids are neutral except: a) glycine. b) threonine. c) lysine. d) proline. e) leucine.

I) Choose the best answer: 1- All of the following amino acids are neutral except: a) glycine. b) threonine. c) lysine. d) proline. e) leucine. 1- All of the following amino acids are neutral except: a) glycine. b) threonine. c) lysine. d) proline. e) leucine. 2- The egg white protein, ovalbumin, is denatured in a hard-boiled egg. Which of the

More information

Application of a new capillary HPLC- ICP-MS interface to the identification of selenium-containing proteins in selenized yeast

Application of a new capillary HPLC- ICP-MS interface to the identification of selenium-containing proteins in selenized yeast Application of a new capillary HPLC- ICP-MS interface to the identification of selenium-containing proteins in selenized yeast Application note Food supplements Authors Juliusz Bianga and Joanna Szpunar

More information

Biomolecular Mass Spectrometry

Biomolecular Mass Spectrometry Lipids ot different than other organic small molecules Carbohydrates Polymers of monosaccharides linked via glycosidic bonds (acetals/ ketals) many different combinationsvery interesting no time ucleic

More information

Chapter 3: Amino Acids and Peptides

Chapter 3: Amino Acids and Peptides Chapter 3: Amino Acids and Peptides BINF 6101/8101, Spring 2018 Outline 1. Overall amino acid structure 2. Amino acid stereochemistry 3. Amino acid sidechain structure & classification 4. Non-standard

More information

Biochemistry - I. Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture 1 Amino Acids I

Biochemistry - I. Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture 1 Amino Acids I Biochemistry - I Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture 1 Amino Acids I Hello, welcome to the course Biochemistry 1 conducted by me Dr. S Dasgupta,

More information

Molecular Biology. general transfer: occurs normally in cells. special transfer: occurs only in the laboratory in specific conditions.

Molecular Biology. general transfer: occurs normally in cells. special transfer: occurs only in the laboratory in specific conditions. Chapter 9: Proteins Molecular Biology replication general transfer: occurs normally in cells transcription special transfer: occurs only in the laboratory in specific conditions translation unknown transfer:

More information

Midterm 1 Last, First

Midterm 1 Last, First Midterm 1 BIS 105 Prof. T. Murphy April 23, 2014 There should be 6 pages in this exam. Exam instructions (1) Please write your name on the top of every page of the exam (2) Show all work for full credit

More information

AMINO ACIDS NON-ESSENTIAL ESSENTIAL

AMINO ACIDS NON-ESSENTIAL ESSENTIAL Edith Frederika Introduction A major component of food is PROTEIN The protein ingested as part of our diet are not the same protein required by the body Only 40 to 50 gr of protein is required by a normal

More information

Two chiral centres (diastereoisomers)

Two chiral centres (diastereoisomers) 1 Two chiral centres (diastereoisomers) Mirror N S N Two enantiomers differ by absolute configuration N N 2 N 2 N A molecule with 1 stereogenic centre exists as 2 stereoisomers or enantiomers Enantiomers

More information

Amino Acid Methods: Present and Future. Claire Hart Sheffield Children s Hospital

Amino Acid Methods: Present and Future. Claire Hart Sheffield Children s Hospital Amino Acid Methods: Present and Future Claire Hart Sheffield Children s Hospital The Status Quo Questionnaire shows everybody using HPLC or ion-exchange amino acid analysers for routine quantitative services

More information

Amino Acids. Lecture 4: Margaret A. Daugherty. Fall Swiss-prot database: How many proteins? From where?

Amino Acids. Lecture 4: Margaret A. Daugherty. Fall Swiss-prot database: How many proteins? From where? Lecture 4: Amino Acids Margaret A. Daugherty Fall 2004 Swiss-prot database: How many proteins? From where? 1986 Use http://us.expasy.org to get to swiss-prot database Proteins are the workhorses of the

More information

Introduction to Biochemistry Midterm exam )ومن أحياها(

Introduction to Biochemistry Midterm exam )ومن أحياها( Introduction to Biochemistry Midterm exam 2016-2017 )ومن أحياها( 1. Which of the following amino (in a peptide chain) would probably be found at a beta bend or turn? a. lysine * b. Gly c. arg d. asn 2.

More information

CH 2 CO 2. The structures of the naturally occurring amino acids are given on page 3 of this chapter.

CH 2 CO 2. The structures of the naturally occurring amino acids are given on page 3 of this chapter. 6.11 Amino Acids, roteins and DA There are about 20 naturally occurring amino acids. The human body can synthesise some of these amino acids. The ones the body cannot synthesise are called essential amino

More information

Methionine (Met or M)

Methionine (Met or M) Fig. 5-17 Nonpolar Fig. 5-17a Nonpolar Glycine (Gly or G) Alanine (Ala or A) Valine (Val or V) Leucine (Leu or L) Isoleucine (Ile or I) Methionine (Met or M) Phenylalanine (Phe or F) Polar Trypotphan (Trp

More information

From sugar unit A From sugar unit B From sugar unit C

From sugar unit A From sugar unit B From sugar unit C ame 215 F12-Exam o. Page 2 I. (26 points) Raffinose is a trisaccharide occurring in cottonseed meal. Answer the following questions as directed in the boxes. (1) ( points) Label each of the glycosidic

More information

Proteins are sometimes only produced in one cell type or cell compartment (brain has 15,000 expressed proteins, gut has 2,000).

Proteins are sometimes only produced in one cell type or cell compartment (brain has 15,000 expressed proteins, gut has 2,000). Lecture 2: Principles of Protein Structure: Amino Acids Why study proteins? Proteins underpin every aspect of biological activity and therefore are targets for drug design and medicinal therapy, and in

More information

Page 8/6: The cell. Where to start: Proteins (control a cell) (start/end products)

Page 8/6: The cell. Where to start: Proteins (control a cell) (start/end products) Page 8/6: The cell Where to start: Proteins (control a cell) (start/end products) Page 11/10: Structural hierarchy Proteins Phenotype of organism 3 Dimensional structure Function by interaction THE PROTEIN

More information

What Are Proteins? Lecture 9: Proteins. Proteins: large complex molecules composed of amino acids. Nutrition 150 Shallin Busch, Ph.D.

What Are Proteins? Lecture 9: Proteins. Proteins: large complex molecules composed of amino acids. Nutrition 150 Shallin Busch, Ph.D. What Are Proteins? Lecture 9: Proteins Nutrition 150 Shallin Busch, Ph.D. Proteins: large complex molecules composed of amino acids. Contain carbon, hydrogen, oxygen, nitrogen Primary source of nitrogen

More information

Chemistry 121 Winter 17

Chemistry 121 Winter 17 Chemistry 121 Winter 17 Introduction to Organic Chemistry and Biochemistry Instructor Dr. Upali Siriwardane (Ph.D. Ohio State) E-mail: upali@latech.edu Office: 311 Carson Taylor Hall ; Phone: 318-257-4941;

More information

PROTEINS. Amino acids are the building blocks of proteins. Acid L-form * * Lecture 6 Macromolecules #2 O = N -C -C-O.

PROTEINS. Amino acids are the building blocks of proteins. Acid L-form * * Lecture 6 Macromolecules #2 O = N -C -C-O. Proteins: Linear polymers of amino acids workhorses of the cell tools, machines & scaffolds Lecture 6 Macromolecules #2 PRTEINS 1 Enzymes catalysts that mediate reactions, increase reaction rate Structural

More information

(65 pts.) 27. (10 pts.) 28. (15 pts.) 29. (10 pts.) TOTAL (100 points) Moorpark College Chemistry 11 Spring Instructor: Professor Gopal

(65 pts.) 27. (10 pts.) 28. (15 pts.) 29. (10 pts.) TOTAL (100 points) Moorpark College Chemistry 11 Spring Instructor: Professor Gopal Moorpark College Chemistry 11 Spring 2012 Instructor: Professor Gopal Examination # 5: Section Five May 1, 2012 Name: (print) GOOD LUCK! Directions: Make sure your examination contains TWELVE total pages

More information

Human Biochemistry Option B

Human Biochemistry Option B Human Biochemistry Option B A look ahead... Your body has many functions to perform every day: Structural support, genetic information, communication, energy supply, metabolism Right now, thousands of

More information

Introduction. and aryl-α-amino ketones, 11

Introduction. and aryl-α-amino ketones, 11 Enantiomeric Resolution of γ-amino Acids Bull. Korean Chem. Soc. 2011, Vol. 32, No. 8 3017 DOI 10.5012/bkcs.2011.32.8.3017 Liquid Chromatographic Resolution of Vigabatrin and Its Analogue γ-amino Acids

More information

LAB#23: Biochemical Evidence of Evolution Name: Period Date :

LAB#23: Biochemical Evidence of Evolution Name: Period Date : LAB#23: Biochemical Evidence of Name: Period Date : Laboratory Experience #23 Bridge Worth 80 Lab Minutes If two organisms have similar portions of DNA (genes), these organisms will probably make similar

More information

If you like us, please share us on social media. The latest UCD Hyperlibrary newsletter is now complete, check it out.

If you like us, please share us on social media. The latest UCD Hyperlibrary newsletter is now complete, check it out. Sign In Forgot Password Register username username password password Sign In If you like us, please share us on social media. The latest UCD Hyperlibrary newsletter is now complete, check it out. ChemWiki

More information

NABIL KILLINY ASSISTANT PROFESSOR PLANT PATHOLOGY UNIVERSITY OF FLORIDA. Citrus responses to huanglongbing

NABIL KILLINY ASSISTANT PROFESSOR PLANT PATHOLOGY UNIVERSITY OF FLORIDA. Citrus responses to huanglongbing NABIL KILLINY ASSISTANT PROFESSOR PLANT PATHOLOGY UNIVERSITY OF FLORIDA Citrus responses to huanglongbing HLB is Vector-borne Disease! Vector psyllids Pathogen Ca. Liberibacter asiaticus. Host Citrus spp.

More information

CHM333 LECTURE 6: 1/25/12 SPRING 2012 Professor Christine Hrycyna AMINO ACIDS II: CLASSIFICATION AND CHEMICAL CHARACTERISTICS OF EACH AMINO ACID:

CHM333 LECTURE 6: 1/25/12 SPRING 2012 Professor Christine Hrycyna AMINO ACIDS II: CLASSIFICATION AND CHEMICAL CHARACTERISTICS OF EACH AMINO ACID: AMINO ACIDS II: CLASSIFICATION AND CHEMICAL CHARACTERISTICS OF EACH AMINO ACID: - The R group side chains on amino acids are VERY important. o Determine the properties of the amino acid itself o Determine

More information

Annual Report ERNDIM-EQAS Quantitative Amino Acids 2002

Annual Report ERNDIM-EQAS Quantitative Amino Acids 2002 Annual Report ERNDIM-EQAS Quantitative Amino Acids 2002 1. Purpose The purpose of the ERNDIM External Quality Assurance Scheme for Quantitative Organic Acids is the monitoring of the analytical quality

More information

Introduction to Proteomics Dr. Sanjeeva Srivastava Department of Biosciences and Bioengineering Indian Institute of Technology - Bombay

Introduction to Proteomics Dr. Sanjeeva Srivastava Department of Biosciences and Bioengineering Indian Institute of Technology - Bombay Introduction to Proteomics Dr. Sanjeeva Srivastava Department of Biosciences and Bioengineering Indian Institute of Technology - Bombay Lecture 01 Introduction to Amino Acids Welcome to the proteomic course.

More information

BODY CHEMISTRY TEST. Sample Report

BODY CHEMISTRY TEST. Sample Report BODY CHEMISTRY TEST * Sample Report Ver. 1.0, Date created: Nov 5, 2017 Disclaimer: VitaminLab is for informational purposes only. lease discuss your results or concerns with your health care professional

More information

Moorpark College Chemistry 11 Fall Instructor: Professor Gopal. Examination #5: Section Five December 7, Name: (print) Section:

Moorpark College Chemistry 11 Fall Instructor: Professor Gopal. Examination #5: Section Five December 7, Name: (print) Section: Moorpark College Chemistry 11 Fall 2011 Instructor: Professor Gopal Examination #5: Section Five December 7, 2011 Name: (print) Section: alkene < alkyne < amine < alcohol < ketone < aldehyde < amide

More information

Table 1. Gas chromatographic and mass spectrometric data of the identified hydrophilic

Table 1. Gas chromatographic and mass spectrometric data of the identified hydrophilic Table 1. Gas chromatographic and mass spectrometric data of the identified hydrophilic compounds. Compound RT a RRT b RI c Quantification ion d Other characteristic ions Amino acids Alanine 9.109 0.499

More information

Lecture 11 AMINO ACIDS AND PROTEINS

Lecture 11 AMINO ACIDS AND PROTEINS Lecture 11 AMINO ACIDS AND PROTEINS The word "Protein" was coined by J.J. Berzelius in 1838 and was derived from the Greek word "Proteios" meaning the first rank. Proteins are macromolecular polymers composed

More information