Biology. Lectures winter term st year of Pharmacy study
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1 Biology Lectures winter term st year of Pharmacy study
2 3 rd Lecture Chemical composition of living matter chemical basis of life. Atoms, molecules, organic compounds carbohydrates, lipids, proteins, nucleic acids
3
4 Atoms -protons,neutrons,electrons electrons electrons
5 Macroelements H,O,C,N,P,S,Na,K,Cl,Fe,Mg Microelements I,Mn,F,Zn,Cu,Co,Se,...
6 Bonds of atoms
7 Molecules Bond ionic, covalent, polar and non-polar metán Sodík Chlór NaCl
8 H2O
9 ATP - energy - Structure of Nucleic acides - signal molecule
10 Macromolecules - sugars -saccharides -lipids -proteins - nucleic acids
11 Sugars - saccharides Monosaccharides - pentose ribose, deoxyribose - hexose glucose, fructose, galactose
12 Sugars - saccharides disascharides - saccharum, maltose, lactose
13 Sugars - saccharides Polysaccharides - starch, glycogen, cellulose glucose glucogen
14 Proteins
15 Proteins
16 Proteins biogenic amino acids, names a codes Aspartic Acid Asp D Glutamic Acid Glu E Phenylanine Phe F Glycine Gly G Alanine Ala A Cystine Cys C Histidine His H Isoleucine Ile I Lysine Lys K Leucine Leu L Methionine Met M Asparagine Asn N Proline Pro P Glutamine Gln Q Arginine Arg R Serine Ser S Threonine Thr T Valine Val V Tryptophan Trp W Tyrosine Tyr Y
17 Amino acids
18 Amino acids sequence 3-D structure Function of protein
19 Genetic code
20 Peptide bond Proteins
21 Proteins
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23
24
25
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27 Folding of proteins
28 Amino Acid Sequence 3-D Structure Protein Function
29
30 α, β Helix pleadted sheet
31 3-D structure of proteins 1. Primary structure amino acids sequence (determine by mrna) 2. secondary α-or β-helix; pleated sheet (H-bonds) 3. Tertiary 3-D protein structure (S-S bonds) 4. Quaternary the final structure of proteins (subunits, prostetic units and etc.)
32
33 3-D Structure of proteins
34 Three ways of proteins bonds
35 Proteins are hungry
36 Amino Acid Sequence 3-D Structure Protein Function
37
38 Nucleic acids DNA-RNA
39 Nucleic acids DNA
40 Chromosome Nucleus consists one or more molecules DNA organized into chromosomes Human: 22 pars autozomes 1 par sex chromosome Human karyotypes
41 Human and mouse chromosomes:
42 DNA chemical structure
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44 Double helix of DNA
45 Double helix Two complementary DNA strains Spring will be 52th anniversary of its discovery
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47
48 Detection of DNA
49 Detection of DNA
50 Red increase of sample transcripts Green increase of sample transcripts Yellow equal abundance Limit of Detection: 1 in 30,000 transcripts ~ 20 transcripts/cell
51 Affymetrix GeneChip Limits: 1: 100,000 transcripts ~ 5 transcripts/cell Affymetrix GeneChip
52 3-D Structure of DNA in nucleus Nuclear membrane Chromatin fiber Chromatin fiber (30 nm dia.) H1 Nucleosomes H1 Nuclear pore DNA } Other Chromatin factors Nuclear matrix
53 DNA-protein complex
54 DNA folding
55 Chromatin structure
56 DNA is wrapped Chromatin around histone structure proteins as chromatin
57
58 The Obstacles are Regulated: Histone Modifications A Histone Code? Bromo Domain Chromo Domain regulation of transcription complex of genes to the DNA locus protection of specific genes
59 All cells the same DNA - different reading of DNA - differentiation of cells
60 Histones play Key role in Regulation of gene expression
61 Transcription and Processing DNA in blue PolyA+RNA in red PolyA+RNA in red (a spliceosomal component) in green Overlap (red + green) = yellow
62 RNA Ribonucleic Similar as DNA Tymine (T) is substituted by uracile (U) RNA can be: One-strain helix Double strains helix Hybridisated with DNA
63 RNA RNA is usually one strain It forms the 3-D secondary and tertiary structure The most important is extreme variability of the RNA molecules - sequence
64 trna: sequence, 3-D structure
65 mrna Messenger RNA Linear molecule coded genetic information copy from DNA Transcription: process of copy mrna from DNA
66 mrna modification Eukaryotic genes are built: Exons: coding regions Introns: non-coding regions splicing: cut of introns from molecule of mrna and link the exons After this modification of mrna is translated to sequence of protein
67 mrna modification Image source:
68 trna Transfer RNA Precise 3-D structure The translation process of protein
69 trna structure
70 trna Specific trna for each amino acid Determine by 3 nucleotide - anticodone (complementary with mrna) Translation: process of prescription of codons of mrna to sequence of amino acids to protein
71 trna
72 trna: sequence, 3-D structure
73 trna structure
74 rrna secondary structure
75 16S ribosomal RNA
76 T. thermophilus - Ramakrishnan et al., Cell, 2002
77 Lipids
78 Schematic Diagram of a phospholipid molecule (phosphatidylcholine)
79 Phospholipids Membranes of mammalian cells contain 3 major phospholipids Classified according to the polar headgroup
80 Choline head-group Polar Saturated fatty acid Unsaturated fatty acid Phosphatidylcholine Nonpolar Differences in the length and degree of saturation of fatty acids affect their ability to pack & hence the fluidity of the bilayer
81
82 Amphipathic A, formula B, schematic drawing C, space-filling model
83 Cholesterol is oriented in the membrane between phospholipid molecules with its polar end towards the outside surface of the monolayer and its hydrophobic end projecting into the interior of the membrane
84
85 Lodish et al, Fig 5-30
86
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