Tables e1a-d. Diagnostic and drug codes for the identification of the multiple sclerosis population, DMT exposures, and study outcomes

Transcription

1 Appendix

2 Tables e1a-d. Diagnostic and drug codes for the identification of the multiple sclerosis population, DMT exposures, and study outcomes Table e-1a Multiple sclerosis and demyelinating disease related codes and drug identification numbers of the disease-modifying therapies ICD-9 1 ICD-10 Drug identification number Multiple sclerosis Multiple sclerosis 340 G35 Demyelinating disease Optic neuritis H46 Acute transverse myelitis G Acute disseminated 323 G36.9 encephalomyelitis Demyelinating disease of CNS G37.8 unspecified Other acute disseminated G36 demyelination Neuromyelitis optica G36.0 Disease-modifying therapy Betaseron (IFNB-1b) Extavia (IFNB-1b) Avonex (IFNB-1a) Rebif (IFNB-1a) Copaxone (glatiramer acetate) Tysabri (natalizumab) Gilenya (fingolimod) Tecfidera (dimethyl fumarate) Aubagio (teriflunomide) Lemtrada (alemtuzumab) Key: The DMTs listed represented all those available (approved) for use in MS by Health Canada at some point during the study

3 Table e-1b ICD-9-CM and ICD-10-CA codes for identification of infection-related physician claims and hospital admissions Infection ICD-9 ICD-10 Intestinal infectious diseases 001.xx 009.xx A00.xx -A09.xx Tuberculosis 010.xx 018.xx A15.xx -A19.xx Zoonotic bacterial diseases 020.xx 027.xx A20.xx -A28.xx Other bacterial disease (eg. leprosy, diseases due to 030.xx 041.xx A30.xx -A49.xx other mycobacteria, diphtheria, whooping cough, septicemia) Human immunodeficiency virus 042.xx B20.xx Poliomyelitis and other non-arthropod-borne viral 045.xx 049.xx A80.xx -A81.xx, disease of central nervous system Viral diseases accompanied by exanthem (eg. smallpox; cowpox and paravaccinia, chickenpox, herpes zoster, herpes simplex, measles, rubella) 050.xx -059.xx A85.xx -A89.xx B00.xx -B09.xx Arthropod-borne viral diseases 060.xx 066.xx A83.xx -A85.xx, A90.xx -A99.xx Other disease due to viruses and chlamydiae 070.xx 079.xx B15.xx -B19.xx, A70.xx -A74.xx, A82.xx, B25.xx -B34.xx, B07.xx Rickettsioses and other arthropod-borne disease 080.xx 088.xx A75.xx -A79.xx, B50.xx -B57.xx Syphilis and other venereal diseases 090.xx 099.xx A50.xx -A64.xx Other spirochetal diseases 100.xx 104.xx A65.xx -A69.xx Mycoses 110.xx 118.xx B35.xx -B49.xx Helminthiasis 120.xx 129.xx B65.xx -B83.xx Other infections and parasitic diseases 130.xx 136.xx B58.xx -B64.xx, B85.xx -B89.xx Late effects of infectious and parasitic diseases 137.xx 139.xx B90.xx -B94.xx Bacterial meningitis 320.xx G00.xx, G01.xx, G04.2x Meningitis due to other organisms 321.xx B45.1x, G02.xx, Meningitis of unspecified cause 322.xx G03.0x G03.8x, G03.1x, G03.9x Intracranial and intraspinal abscess 324.xx G06.xx Late effects of intracranial abscess or pyogenic 326.xx G09.xx infection Blepharitis 373.0x H01.0x Infective dermatitis of eyelid of types resulting in 373.4x H01.8x deformity Other infective dermatitis of eyelid 373.5x H01.8x Parasitic infection of eyelid 373.6x B89.xx Acute inflammation of orbit 376.0x H05.0x

4 Table e-1b ICD-9-CM and ICD-10-CA codes for identification of infection-related physician claims and hospital admissions (continued) Infection ICD-9 ICD-10 Infective otitis externa 380.1x H60.0x, H60.1x, H60.2x, H60.3x, H62.4x Suppurative and unspecified otitis media 382.xx H66.xx Acute mastoiditis 383.0x H70.0x Acute nasopharyngitis (common cold) 460.xx J00.xx Acute sinusitis 461.xx J01.xx Acute pharyngitis 462.xx J02.xx Acute tonsillitis 463.xx J03.xx Acute laryngitis and tracheitis 464.xx J04.xx, J05.xx Acute upper respiratory tract infection of multiple or 465.xx J06.xx unspecified sites Acute bronchitis and bronchiolitis 466.xx J20.xx, J21.xx Chronic sinusitis 473.xx J32.xx Chronic disease of tonsils and adenoids 474.xx J35.xx Chronic laryngitis and laryngotracheitis 476.xx J37.xx Viral pneumonia 480.xx J12.xx Pneumococcal pneumonia 481.xx J13.xx, J18.1x Other bacterial pneumonia 482.xx J15x, J14x Pneumonia due to other specified organism 483.xx J16.xx Pneumonia in infectious diseases classified elsewhere 484.xx J17.xx Bronchopneumonia, organism unspecified 485.xx J18.0x Pneumonia, organism unspecified 486.xx J18.xx Influenza 487.xx J11.xx, J10.xx, J09.xx Bronchitis, not specified as acute or chronic 490.xx J40.xx Infections of the kidney 590.xx N10.xx, N11. xx, N12.xx,, N15.1x, N28.84, N28.85, N28.86, N16.xx Cystitis 595.xx N30.xx Urethritis not sexually transmitted 597.xx N34.xx Urinary tract infection, site not specified 599.0x N39.0x Inflammatory disease of prostate (prostatitis) 601.xx N41.xx Carbuncle and furuncle 680.xx L02.xx Cellulitis and abscess of finger and toe 681.xx L03.xx Other cellulitis and abscess 682.xx L03.xx Acute lymphadenitis 683.xx L04.xx Impetigo 684.xx L01.xx Other local infections of skin and subcutaneous tissue 686.xx L08.xx, L88.xx, L98.0x, Septic arthritis 711.0x M00.xx, M01.xx

5 Table e-1b ICD-9-CM and ICD-10-CA codes for identification of infection-related physician claims and hospital admissions (continued) Infection ICD-9 ICD-10 Osteomyelitis periostitis and other infections involving bone 730.xx M86.xx, M46.2x M46.3x, M89.6x Bacteremia 790.7x R78.81 Viremia 790.8x B34.9x Key: ICD-9-CM=International Classification of Diseases, Ninth Revision, Clinical Modification; ICD-10-CA= International Classification of Diseases, Tenth Revision, Canada. ICD10 was only used to identify infection -related hospitalizations.

6 Table e-1c ICD-9-CM and ICD-10-CA codes for identification of the five most common infection groups Infection type ICD-9 ICD-10 Upper respiratory tract infections xx-465.xx J00.xx- J06.xx Infections of urinary system xx; 590.xx; 597.xx; 599.0x N10.xx, N11.xx, N12.xx,, N15.1x, N16.xx. N28.84, N28.85, N28.86, N30.xx, N34.xx, N39.0x, Bronchitis and bronchiolitis xx; 490.xx J20.xx, J21.xx, J40.xx Infections of the skin and subcutaneous tissue 680.xx-686.xx L01.xx-L08.xx, L88.xx, L98.0x Pneumonia xx 486.xx J12.xx- J18.xx Key: ICD-9-CM=International Classification of Diseases, Ninth Revision, Clinical Modification; ICD-10-CA= International Classification of Diseases, Tenth Revision, Canada. ICD-10 was only used to identify infection-related hospitalizations. Groups were created based on prior literature (as shown) or by combining related ICD sub-chapters (e.g. as for infections of the skin and subcutaneous tissue) Source references 1. Mueller EL, Walkovich KJ, Mody R, Gebremariam A and Davis MM. Hospital discharges for fever and neutropenia in pediatric cancer patients: United States, BMC Cancer. 2015; 15: Nelson RE, Xie Y, DuVall SL, et al. Multiple Sclerosis and Risk of Infection-Related Hospitalization and Death in US Veterans. Int J MS Care. 2015; 17: Chang LY, Lai CC, Chen CJ, et al. Recent trends in prescribing antibiotics for acute tonsillitis in pediatric ambulatory care in Taiwan, : A nationwide population-based study. J Microbiol Immunol Infect. 2015: Wang EE, Einarson TR, Kellner JD and Conly JM. Antibiotic prescribing for Canadian preschool children: evidence of overprescribing for viral respiratory infections. Clin Infect Dis. 1999; 29:

7 Table e-1d The first and second generation disease modifying drugs for MS approved in Canada by the end of 2013 Health Canada Approval data Generation Date of first prescription filled in the current study Betaseron (IFNB-1b) July 1995 first July 1996 Extavia (IFNB-1b) January 2010 first N/A Avonex (IFNB-1a) April 1998 first October 1998 Rebif (IFNB-1a) February 1998 first June 1998 Copaxone (glatiramer October 1997 first February 1998 acetate) Tysabri (natalizumab) October 2006 second March 2007 Gilenya (fingolimod) March 2011 second July 2011 Tecfidera (dimethyl fumarate) Aubagio (teriflunomide) Lemtrada (alemtuzumab) April 2013 second June 2013 November 2013 second N/A December 2013 second N/A Key: N/A = not applicable; no individual filled a prescription for this DMT during the study All approval dates were obtained from Health Canada (available at:

8 Table e-1e ICD-9-CM and ICD-10-CA codes for identification of comorbidities in the multiple sclerosis population Comorbidity ICD-9 ICD-10 Diabetes 250.xx E10.xx -E14.xx Malignancies 140.xx-209.xx 235.xx-239.xx C00.xx-C96.xx D37.xx-D49.xx Rheumatoid arthritis 714.xx M05.xx -M06.xx Psoriasis 696.0x, 696.1x L40.xx, M07.0x- M07.3x Inflammatory bowel disease 555.xx, 556.xx K50.xx, K51.xx Chronic lung disease 493.xx, 491.xx, 492.xx, 496.xx J45.xx, J46.xx, J40.xx, J42.xx, J43.xx, J44.xx Key: ICD-9-CM=International Classification of Diseases, Ninth Revision, Clinical Modification; ICD-10-CA= International Classification of Diseases, Tenth Revision, Canada. Comorbidities were identified using health administrative data ( 1 hospital admission or 2 physician claims for the relevant diagnostic code) based on data in the 5 years prior to the index date (for pre-index date comorbidities) as well as over the entire study period. Once a comorbidity was identified, an individual was considered affected from the date of the first relevant claim and thereafter. ICD-10 was only used to identify hospitalizations.

9 Table e-2 Characteristics of the multiple sclerosis study population at the index date by subsequent disease-modifying treatment exposure Characteristics Unexposed 1 DMT Any betainterferon Glatiramer acetate Natalizumab Any oral DMT 1 st and 2 nd 1 st generation 1 st generation 2 nd generation 2 nd generation generation combined N=5077 N=1716 N=1386 N=656 N=100 N=98 Age (yrs), mean (SD) 47.8 (13.5) 38.2 (9.4) 38.0 (9.4) 37.7 (9.2) 34.5 (9.6) 35.3 (9.1) Women, N (%) 3712 (73.1) 1287 (75.0) 1039 (75.0) 500 (76.2) 71 (71.0) 76 (77.6) Index year, N (%) (35.0) 642 (37.4) 569 (41.1) 189 (28.8) 23 (23.0) 12 (12.2) (36.6) 659 (38.4) 541 (39.0) 278 (42.4) 60 (60.0) 38 (38.8) (28.4) 415 (24.2) 276 (19.9) 189 (28.8) 17 (17.0) 48 (49.0) SES, N (%) 1 (lowest income quintile) 891 (17.5) 308 (17.9) 253 (18.3) 126 (19.2) 19 (19.0) 13 (13.3) (19.4) 319 (18.6) 257 (18.5) 118 (18.0) 18 (18.0) 18 (18.4) (20.7) 359 (20.9) 296 (21.4) 142 (21.6) 19 (19.0) 19 (19.4) (21.6) 371 (21.6) 288 (20.8) 144 (22.0) 27 (27.0) 22 (22.4) 5 (highest income quintile) 1028 (20.2) 357 (20.8) 290 (20.9) 126 (19.2) 17 (17.0) 26 (26.5) Unknown 25 (0.5) <6 <6 <6 <6 <6

10 Table e-2 Characteristics of the multiple sclerosis study population at the index date by subsequent disease-modifying treatment exposure (continued) Characteristics Unexposed 1 DMT Any betainterferon Glatiramer acetate Natalizumab Any oral DMT 1 st and 2 nd 1 st generation 1 st generation 2 nd generation 2 nd generation generation combined N=5077 N=1716 N=1386 N=656 N=100 N=98 Diabetes 310 (6.1) 54 (3.1) 46 (3.3) 26 (4.0) <6 <6 Malignancies 408 (8.0) 67 (3.9) 54 (3.9) 26 (4.0) <6 <6 Chronic lung diseases 497 (9.8) 131 (7.6) 106 (7.6) 59 (9.0) 7 (7) <6 Inflammatory bowel disease 56 (1.1) 16 (0.9) 10 (0.7) 7 (1.1) <6 <6 Rheumatoid arthritis 140 (2.8) 20 (1.2) 16 (1.2) 8 (1.2) <6 <6 Psoriasis 15 (0.3) 7 (0.4) 7 (0.5) <6 <6 <6 Number of comorbidities, N (%) None 3857 (76.0) 1449 (84.4) 1170 (84.4) 542 (82.6) 84 (84.0) 89 (90.8) (20.4) 242 (14.1) 195 (14.1) 99 (15.1) 16 (16.0) 9 (9.2) 2 or more 185 (3.6) 25 (1.5) 21 (1.5) 15 (2.3) 0 0 The oral DMTs included fingolimod and dimethyl fumarate. No person filled a prescription for teriflunomide, alemtuzumab, or the generic beta-interferon-1b (extavia ) during the study period. As some persons filled a prescription for more than one DMT during the study period, the sum of the subgroups exceeds the total number of people ever exposed (n=1716). Comorbidities identified during the 5 years prior to index date (diabetes, malignancies, chronic lung disease, inflammatory bowel disease, rheumatoid arthritis and psoriasis); all were included to generate the number of comorbidities. Due to privacy regulations, and as required by the data custodians (stewards), cells with less than 6 cases were not be reported.

11 Table e-3 Adjusted hazard ratios of physician claims for specific infections by multiple sclerosis disease modifying treatment Infection Model DMT exposure status Infection-related physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Unexposed , ( ) reference 1 Any DMT ( ) 0.96 ( ) 2 Any 1 st generation DMT ( ) 0.94 ( ) 2 Any 2 nd generation DMT ( ) 1.58 ( ) Upper respiratory 3 Beta-interferon ( ) 0.92 ( ) tract infection 3 Glatiramer acetate ( ) 1.00 ( ) 3 Natalizumab ( ) 1.77 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.68 ( ) Unexposed ( ) reference 1 Any DMT ( ) 1.09 ( ) 2 Any 1 st generation DMT ( ) 1.09 ( ) 2 Any 2 nd generation DMT ( ) 1.14 ( ) Infections of the 3 Beta-interferon ( ) 1.06 ( ) urinary system 3 Glatiramer acetate ( ) 1.16 ( ) 3 Natalizumab ( ) 1.21 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.05 ( )

12 Table e-3 Adjusted hazard ratios of physician claims for specific infections by multiple sclerosis disease modifying treatment (continued) Infection Model DMT exposure status Infection-related physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Unexposed ( ) reference 1 Any DMT ( ) 1.03 ( ) 2 Any 1 st generation DMT ( ) 1.03 ( ) Infections of the 2 Any 2 nd generation DMT ( ) 1.04 ( ) skin and 3 Beta-interferon ( ) 1.09 ( ) subcutaneous 3 Glatiramer acetate ( ) 0.85 ( ) tissue 3 Natalizumab ( ) 0.92 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.01 ( ) Unexposed ( ) reference 1 Any DMT ( ) 0.93 ( ) 2 Any 1 st generation DMT ( ) 0.91 ( ) 2 Any 2 nd generation DMT ( ) 1.38 ( ) Bronchitis and 3 Beta-interferon ( ) 0.92 ( ) bronchiolitis 3 Glatiramer acetate ( ) 0.89 ( ) 3 Natalizumab ( ) 1.45 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.52 ( )

13 Table e-3 Adjusted hazard ratios of physician claims for specific infections by multiple sclerosis disease modifying treatment (continued) Infection Model DMT exposure status Infection-related Pneumonia physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Unexposed ( ) Reference 1 Any DMT ( ) 0.75 ( ) 2 Any 1 st generation DMT ( ) 0.72 ( ) 2 Any 2 nd generation DMT ( ) 1.66 ( ) 3 Beta-interferon ( ) 0.74 ( ) 3 Glatiramer acetate ( ) 0.64 ( ) 3 Natalizumab < ( ) Any 1st generation DMT ( ) Reference 2 Any 2 nd generation DMT ( ) 2.33( ) Key: ahr=adjusted Hazard Ratio; CI= Confidence Interval; DMT= disease modifying treatment; PY=person -years. Models were adjusted for sex, age (continuous), index year (continuous), SES (quintiles), number of comorbidities (none, 1, 2). Due to privacy regulations, and as required by the data custodians (stewards), cells with less than 6 cases were not be reported, nor were the corresponding crude rates. Oral DMTs were assessed only as part of the second generation drugs, i.e not as a separate class, due to the limited number of eve nts.

14 Table e-4 Adjusted hazard ratios of infection-related physician claims by multiple sclerosis disease modifying treatment stratified by sex and age at the index date Stratified by sex and age Men Women Age 44 Age 45+ Men Women Age 44 Age 45+ Model DMT exposure status Infection-related physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Unexposed 6,724 12, ( ) reference 1 Any DMT ( ) 0.91 ( ) Unexposed 27,225 37, ( ) reference 1 Any DMT 3, ( ) 1.00 ( ) Unexposed 17,479 2, ( ) reference 1 Any DMT ( ) 0.99 ( ) Unexposed 16,470 2, ( ) reference 1 Any DMT ( ) 0.92 ( ) Unexposed 6,724 12, ( ) reference 2 Any 1 st generation DMT ( ) 0.86 ( ) Unexposed 27,225 37, ( ) reference 2 Any 1 st generation DMT ( ) 0.99 ( ) Unexposed 17,479 2, ( ) reference 2 Any 1 st generation DMT ( ) 0.97 ( ) Unexposed 16,470 2, ( ) reference 2 Any 1 st generation DMT ( ) 0.92 ( )

15 Table e-4 Adjusted hazard ratios of infection-related physician claims by multiple sclerosis disease modifying treatment stratified by sex and age at the index date (continued) Stratified by sex and age Men Women Age 44 Age 45+ Men Women Age 44 Age 45+ Model DMT exposure status Infection-related physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Unexposed 6,724 12, ( ) reference 2 Any 2 nd generation DMT ( ) 2.09 ( ) Unexposed 27,225 37, ( ) Reference 2 Any 2 nd generation DMT ( ) 1.32 ( ) Unexposed 17,479 2, ( ) Reference 2 Any 2 nd generation DMT ( ) 1.52 ( ) Unexposed 16,470 2, ( ) Reference 2 Any 2 nd generation DMT ( ) 1.25 ( ) Unexposed 6,724 12, ( ) reference 3 Beta-interferon ( ) 0.81 ( ) Unexposed 27,225 37, ( ) reference 3 Beta-interferon ( ) 0.97 ( ) Unexposed 17,479 2, ( ) reference 3 Beta-interferon ( ) 0.95 ( ) Unexposed 16,470 2, ( ) reference 3 Beta-interferon ( ) 0.88 ( )

16 Table e-4 Adjusted hazard ratios of infection-related physician claims by multiple sclerosis disease modifying treatment stratified by sex and age at the index date (continued) Stratified by sex and age Men Women Age 44 Age 45+ Men Women Age 44 Age 45+ Model DMT exposure status Infection-related physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Unexposed 6,724 12, ( ) reference 3 Glatiramer acetate ( ) 0.99 ( ) Unexposed 27,225 37, ( ) reference 3 Glatiramer acetate ( ) 1.07 ( ) Unexposed 17,479 2, ( ) reference 3 Glatiramer acetate ( ) 1.03 ( ) Unexposed 16,470 2, ( ) reference 3 Glatiramer acetate ( ) 1.07 ( ) Unexposed 6,724 12, ( ) Reference 3 Natalizumab ( ) 2.17 ( ) Unexposed 27,225 37, ( ) reference 3 Natalizumab ( ) 1.41 ( ) Unexposed 17,479 2, ( ) reference 3 Natalizumab ( ) 1.63 ( ) Unexposed 16,470 2, ( ) reference 3 Natalizumab ( ) 1.48 ( )

17 Table e-4 Adjusted hazard ratios of infection-related physician claims by multiple sclerosis disease modifying treatment stratified by sex and age at the index date (continued) Stratified by sex and age Men Women Age 44 Age 45+ Model DMT exposure status Infection-related physician claims Person-years Crude rate per 1000 PY (95%CI) ahr (95%CI) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 2.42 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.32 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.57 ( ) Any 1 st generation DMT ( ) reference 2 Any 2 nd generation DMT ( ) 1.36 ( ) Key: ahr=adjusted Hazard Ratio; CI= Confidence Interval; DMT= disease modifying treatment; PY= person -years. Models were adjusted for sex (except for the sex-specific models), age (continuous, except for the age-specific models), index year (continuous), SES (quintiles), and number of comorbidities (none, 1, 2). Due to privacy regulations, and as required by the data custodians (stewards), cells with less than 6 cases were not be reported, nor were the corresponding crude rates. Oral DMTs were assessed only as part of the second generation drugs, i.e not as a separate class, due to the limited number of events.