Protocol Synopsis. Administrative information

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Protocol Synopsis Item (SPIRIT item no.) Administrative information Title (1) Introduction Description of research question (6a) Description An optimal schedule for the post-polio eradication era: multicentre international randomised placebo-controlled trial to assess the effect of different vaccination schedules on childhood mortality and morbidity. Hypothesis: Researchers have advanced that vaccines can have beneficial or detrimental effects on child morbidity and mortality other than through preventing the target aetiology. Existing knowledge: A systematic review on heterologous effects of childhood vaccination examined the effects of vaccination on all-cause mortality. Most data were considered of poor quality, few randomized controlled trials existed, and many studies were done by one set of researchers and largely in one country. The available data did not allow any breakdown of the underlying causes of the all-cause mortality endpoint and of the 32 birth cohorts identified the greater portion of evidence was from short-term follow up in clinical trials or observational studies at high risk of bias. With these limitations, study authors reported that Bacille-Calmette-Guérin (BCG) and standard-titre measles vaccines may reduce risk of all-cause mortality by as much as 50%; the systematic review authors and a WHO working group considered it possible that real effects existed but the magnitude and mechanism were not known. Similar claims were reported for DTP-containing vaccines but the systematic review authors and WHO working group considered these data to be too weak to draw any conclusions. A systematic review of immunological heterologous effects of BCG, tetanus toxoid, diphtheria, and measles containing vaccines in children showed in some cases there were patterns of heterologous immunological responses to vaccination. For example, groups who had received BCG vaccination, compared with those who had not (or had received it later), had higher in vitro production of the pro-inflammatory cytokine interferongamma following stimulation with unrelated bacterial, fungal, and viral components. Although a collection of immunological patterns could be found the data do not describe any link to clinical outcomes, whether mortality or other non-fatal outcomes. This limitation prevents development of a biological mechanism for any nonspecific effect, thereby limiting the ability to extrapolate results for BCG and measles vaccine to other vaccines. Page 1 of 6

Need for a trial: The existing epidemiological and immunological data on heterologous effects of vaccination are drawn from studies with a high risk of bias, use vaccine schedules that are no longer implemented, and have no causal linkage. As such, randomised trials using vaccines relevant to the EPI schedule and which provide insight into casual mechanisms are needed. Due to the high risk of bias in the epidemiological data, the potentially beneficial effects of measles vaccine observed need to be confirmed in robust clinical trials before changes can be made to global immunisation schedules. In addition, a 2+1 schedule has been recommended as beneficial for immunogenicity outcomes in some vaccines, such as pneumococcal vaccines, however, its use in LMICs is currently still limited, in part because most of the evidence is from industrialised countries. An immunisation schedule which removes one immunisation visit in infancy, whilst still retaining or improving current levels of immunogenicity, has substantial cost-saving implications. Explanation for choice of comparators (6b) Objectives (7) The comparator arm is the current EPI infant vaccine schedule which includes the first dose of DTwP-HBV/Hib at 6 weeks of age and has subsequent visits at a minimum 4-week interval (3+0 schedule). 1. What is the effect on childhood mortality of an infant schedule with an additional early dose of measles vaccine at 14 weeks of age? 2. What is the effect on childhood mortality of an infant schedule with 2 priming doses and 1 booster dose (2+1 schedule), compared with 3 priming doses and no booster (3+0 schedule)? Secondary research questions: A. What is the effect of the primary research objectives on cause-specific mortality? B. What is the effect of the primary research objectives on morbidity outcomes such as all cause-hospitalization or hospitalization for acute febrile illness? C. Is there a sex-differential effect for the primary research questions? D. Do the effects for the primary research questions vary according to other covariates such as malaria status, nutritional status, and vitamin A co-administration? E. What are the additional programmatic and financial implications? Immunological research questions (nested study): Page 2 of 6

F. Which immunological measures correlate with morbidity outcomes? Trial design (8) Individually randomised, multi-centre, international, placebocontrolled, 2 x 2 factorial clinical trial, with nested immunological sub-study. See Table 1 for description of study arms Methods: Participants, interventions, and outcomes Study setting Countries with high mortality/morbidity, with a vaccination schedule in line with WHO recommendations Eligibility criteria Inclusion criteria: Participants meeting all of the following criteria will be enrolled in the study aged less than 14 weeks in good health as judged by medical history and physical exam has received birth dose and DTP1 vaccinations as per EPI schedule parent or caregiver willing and able to give informed consent Exclusion criteria: Participants meeting any of the following criteria will not be enrolled in the study fever > 38 degrees requiring immediate hospitalisation known allergy to any vaccine receipt of other investigational vaccine prior to enrolment participant s family plans to move outside study area Interventions (11a) Outcomes (12) Experimental group: Participants will be randomised to receive either their EPI vaccination in a 2+1 or 3+0 schedule, and, additionally, either a measles or placebo vaccine at approximately 14 weeks of age See Table 1 for description of study arms Primary outcome: all-cause mortality by 2 years of age Secondary outcomes: cause-specific mortality all-cause morbidity defined as health seeking behaviour such as hospitalisation, consultation with health clinic, or other health professional; consideration of other endpoints such as hospitalization for acute febrile illness all-cause and cause-specific hospitalisations Page 3 of 6

mortality and morbidity up until 5 years of age in a subset of children Immunological sub-study: immunogenicity to vaccine antigens immune cell phenotyping of a subset of participants in each arm correlated with non-specific outcomes transcriptome of a subset of participants in each arm correlated with non-specific outcomes Participant timeline (13) See Figure 1 Sample size (14) Sample size calculations: For mortality from 14 weeks to 2 years of age; a sample size of 21,863 per arm (total study size 87,344) will be sufficient to detect a minimum relative difference of RR=0.8 with 90% power and two-sided alpha of 0.025, assuming mortality in the EPI arm of 2.5%. This sample size is sufficient to detect an interaction between vaccine group and sex of at least OR: 1.7 (See Table 2). Immunogenicity sub study: Samples from 250 participants per arm provide 90% power to detect a 35% increase in antibody following the 9-month booster. Sub-studies will be conducted in Africa and Asia separately. Methods: Intervention assignment Allocation sequence generation Block randomisation with randomly varying block size, (16a) stratified by sex and geographic location. Blinding/masking (17a) Placebo: saline (IM) and oral Methods: Data collection, management, and analysis Data assessment and collection (18a) Accurate recording of admission and discharge diagnoses (including death) at hospitals Passive disease surveillance for EPI diseases, with laboratory confirmation as appropriate Verbal autopsies Blood samples: 18 weeks, 9, 10, 12, and 24 months Statistical methods for analysing primary and secondary outcomes (20a) For mortality outcomes proportional hazards models will be used adjusted for sex, randomised group and include a group by sex interaction term. Participants who are lost to follow up will be censored in the analysis at the time of last known contact. For the analysis of morbidity outcomes, Poisson or negative Page 4 of 6

binomial regression models will be used, depending on data over-dispersion. For each participant, the number of events during the follow up period will be the outcome of interest. Models will adjust for geographic region, sex, randomised group, and include a group by sex interaction. The length of follow up time available for each participant will be included as an offset in the model. Statistical methods for any additional analyses (20b) Methods: Monitoring Data monitoring (21a) Adverse events (22) Immunology sub-study: Banked blood samples will be analysed to determine which immunological measures correlate with differences in the epidemiological outcomes. A multidisciplinary DSMB will be convened which will meet at least yearly to monitor interim safety and outcome data, and review assumptions underlying sample size calculations. Health status of participants will be monitored and reported as study outcomes. Ethics and dissemination (omitted) Appendices Informed consent (32) Written informed consent signed or fingerprint Biological specimens (33) Blood (Sera, +/- PBMC and RNA) at: 18 weeks, 9, 10, 12, and 24 months Page 5 of 6

Appendix Table 1: Schedule of administration RANDOMISATION Schedule DTP2 visit DTP3 visit 9-12 months ARM A 3+0 schedule D D M M ARM B 3+0 schedule D D M ARM C 2+1 schedule D M M D ARM D 2+1 schedule D M D D Standard EPI vaccination schedule containing: DTwP-HBV/Hib: Diphtheria, tetanus, pertussis (whole cell formulation), hepatitis B, and Haemophilus influenzae type b; and pneumococcal conjugate vaccine. Placebo versions of standard vaccination schedule M Measles and rubella vaccine Placebo version of measles and rubella vaccine Table 2: Sample size calculations Assumptions Mortality* in EPI arm (ARM A) Diff % (RR 0.8) N per arm Total study size 4 arms OR for sex diff detectable with this sample size Alpha = 0.025 1.5% 0.3% 36,729 146,916 1.7 (two-sided), 2.0% 0.4% 27,421 109,684 1.7 90% power 2.5% 0.5% 21,836 87,344 1.7 * from randomisation (~10 weeks) to 2 years of age Page 6 of 6