Real-Time the Monitoring Mitophagy Process by A Photostable. Fluorescent Mitochondrion-Specific Bioprobe with AIE. Characteristic

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Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2015 Electronic Supplementary Information Real-Time the Monitoring Mitophagy Process by A Photostable Fluorescent Mitochondrion-Specific Bioprobe with AIE Characteristic Weijie Zhang, a,b, Ryan T. K. Kwok, b,c, Yilong Chen, b,c Sijie Chen, b,c Engui Zhao, b,c Chris Y. Y. Yu, b,c, Jacky W. Y. Lam, b,c Qichang Zheng a,* and Ben Zhong Tang b,c,d,* a Department of Hepatobiliary Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430022, China. b Department of Chemistry, Institute for Advanced Study, Division of Biomedical Engineering, Division of Life Science, State Key Laboratory of Molecular Neuroscience, Institute of Molecular Functional Materials, State Key Laboratory of Molecular Functional Materials, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China. c HKUST Shenzhen Research Institute, No. 9 Yuexing 1 st RD, South Area, Hi-tech Park, Nanshan, Shenzhen 518057, China. d Guangdong Innovative Research Team, SCUT-HKUST Joint Research Laboratory, State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou 510640, China *Corresponding authors: qc_zheng@mail.hust.edu.cn (Q. Z.) and tangbenz@ust.hk (B.Z.T) S1

Experimental Section Table of Contents S3 Scheme S1 Synthetic route to TPE-Py-NCS. Fig. S1 (A) 1 H and (B) 13 C NMR spectra of TPE-Py-NCS in DMSO-d 6. Fig. S2 High resolution mass spectrum of TPE-Py-NCS. Fig. S3 Absorption and PL spectra of TPE-Py-NCS in DMSO. Concentration: 10 μm. Fig. S4 PL spectra of TPE-Py-NCS in DMSO/PBS mixtures with different PBS S6 S6 S7 S7 S8 fractions (f p ) (B) Plot of PL intensity at 598 nm versus the composition of the DMSO/PBS mixture of TPE-Py-NCS. Concentration: 10 μm; excitation wavelength: 405 nm. Fig. S5 Size distribution of TPE-Py-NCS aggregates in (A) DMSO/water S8 mixtures with 99% water fraction and (B) DMSO/PBS mixtures with 99% PBS fraction. Concentration: 10 M. Fig. S6 Cell viability of HeLa cells incubated with different concentration of TPE-Py-NCS. Fig. S7Molecular structure of MitoTracker Red CMCRos. Fig. S8 Fluorescent images of HeLa cell stained with TPE-Py-NCS (5 μm) for S9 S9 S10 15min. The stained cells (A) are without any treatment, (B) are fixed with 4% PFA and (C) are fixed with 4% PFA followed by washing three times with DMSO. scale bar: 20 μm. Fig. S9 Fluorescent images of HeLa cells stained with TPE-Py-NCS (A) S10 untreated and (B) treated with CCCP after dye staining. Concentration: 5 μm (TPE-Py-NCS) and 10 μm (CCCP); excitation wavelength: 330 385 nm. All the images share the same scale bar: 20 μm. Fig. S10 (A and C) Bright-field and (B and D) fluorescent images of HeLa cells S11 stained with LysoTracker Red DND-99 for 30 min after incubated in (A and B) PBS and (C and D) PBS with rapamycin for 1 h. Concentration: 150 nm S2

(LysoTracker Red DND-99), 50 g/ml (rapamycin). Excitation wavelength: 540 580 nm. All the images share the same scale bar = 20 μm. Fig. S11 Confocal images of HeLa cells co-stained with (A) MTR (50 nm) and S11 LysoTracker Green DND-26 (150 nm), and (B) TPE-Py-NCS (5 μm) and LysoTracker Red (150 nm) in the presence of rapamycin (50 mg/ml). Scale bar: 20 μm. S3

Experimental Section Materials Triphenylphosphine (PPh 3 ), carbon disulfide (CS 2 ) and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich and used as received. Minimum essential medium (MEM), fetal bovine serum (FBS), penicillin, streptomycin, LysoTracker Red DND-99 (LTR), LysoTracker Green DND-26 (LTG), MitoTracker Red CMXRos (MTR) and rapamycin were purchased from Life Technologies. Carbonyl cyanide m-chlorophenylhydrazone (CCCP) was bought from Sigma. Tetrahydrofuran (THF) and dichloromethane (DCM) were distilled from sodium benzophenone ketyl or calcium hydride, respectively under nitrogen immediately prior to use. Milli-Q water was supplied by Milli-Q Plus System (Millipore Corporation, United States). Instruments 1 H and 13 C NMR spectra were measured on a Bruker ARX 400 NMR spectrometer using DMSO-d 6 as a solvent and tetramethylsilane (TMS; δ = 0) was chosen as an internal reference. High-resolution mass spectra (HRMS) were recorded on a Finnigan MAT TSQ 7000 mass spectrometer system operating in a MALDI-TOF mode. Absorption spectra were measured on a Milton Roy Spectronic 3000 Array spectrophotometer. Photoluminescence (PL) spectra were recorded on a Perkin-Elmer LS 55 spectrofluorometer with a xenon discharge lamp excitation. Particle size analysis was determined at room temperature on a ZetaPlus Potential Analyzer (Brookhaven Instruments Corporation, USA). Synthesis of TPE-Py-NCS TPE-Py-N 3 was synthesized according to our previous literature method. 1 Into a 100 ml two-necked round bottom flask equipped a condenser were added a dry DCM solution (10 ml) of TPE-Py-N 3 (200 mg, 0.30 mmol), PPh 3 (160 mg, 0.6 mmol) and CS 2 (17.4 ml, 10 mmol) under nitrogen. After reflux for 24 h, the mixture was cooled to room temperature and the solvent was evaporated under reduced pressure. The residue was purified by a silica gel column chromatography using DCM/acetone mixtures (5:1 v/v) as eluent to furnish a yellow powder in a yield of 84%. 1 H NMR S4

(400 MHz, DMSO-d 6 ), δ (ppm): 8.92 (d, 2H), 8.20 (d, 2H), 7.91 (d, 1H), 7.51 (d, 2H), 7.43 (d, 1H), 7.18 (m, 9H), 7.07 (d, 2H), 7.00 (m, 6H), 4.52 (t, 2H), 3.73 (t, 2H), 1.99 (m, 2H), 1.66 (m, 2H). 13 C NMR (100 MHz, DMSO-d 6 ), δ (ppm): 152.9, 145.6 144.2, 143.0, 142.9, 142.7, 141.6, 140.4, 139.9, 133.3, 131.4, 130.7, 130.6, 128.0, 127.8, 127.8, 126.9, 126.8, 123.8, 123.2, 58.9, 44.2, 27.7, 25.8. HRMS (MALDI-TOF): m/z 549.2360 (M +, calcd. 549.2364). Cell culture Human cervical cancer cell (HeLa) line was provided by American Type Culture Collection. The HeLa cells were cultured in MEM containing 10% heat-inactivated FBS, 100 U/mL penicillin and 100 μg/ml streptomycin, at 37 C in a humidified incubator with 5% CO 2. Before experiment, the cells were pre-cultured until confluence was reached. Cytotoxicity studies MTT assays were used to evaluate the cytotoxicity of TPE-Py-NCS. The cells were seeded in a 96-well plate at a density of 5000 cells/well. After 24 h incubation, TPE-Py-NCS with a concentration varying form 0 7.5 μm was added into the 96-well plate. After 24 h treatment, 10 μl of freshly prepared MTT solution (5 mg/ml in PBS) was added into the each well. After 4 h incubation, 100 μl of solubilization solution containing 10% SDS and 0.01 M HCl were added to dissolve the purple crystals. After 8 h incubation, the absorbance of MTT at 595 nm was recorded using a Perkin-Elmer Victor plate reader. The cell viability was expressed by the ratio of absorbance of the cells incubated with TPE-Py-NCS to that of the cells incubated with culture medium only. Each of the experiments was performed at least 6 times. Cell imaging The HeLa cells were grown overnight on a 35 mm petri dish with a cover slip. The live cells were incubated with 5 μm of TPE-Py-NCS solution (by adding 2 μl of a 5 mm stock solution of TPE-Py-NCS in DMSO to 2 ml of MEM) or 50 nm of MTR solution (by adding 0.5 μl of a 200 μm stock solution of MT in DMSO to 2 ml of MEM) for 15 min. The dye-labelled cells were rinsed with freshly PBS 3 times and S5

then fixed by using 4% formaldehyde in PBS for 20 min. After fixation, the cells were washed with acetone 3 times. The cells were imaged under a fluorescence microscope (BX41 Microscope) using different combination of excitation and emission filters for each dye. For TPE-Py-NCS: excitation filter = 330 385 nm, dichroic mirror = 400 nm, and emission filter = 420 nm long pass. For MTR: excitation filter = 540 580 nm, dichroic mirror = 600 nm, and emission filter = 610 nm long pass. Cell imaging with CCCP treatment The HeLa cells were grown overnight on a 35 mm petri dish with a cover slip. The cells were incubated with 5 μm of TPE-Py-NCS for 30 min. The dye-labelled cells were then treated with 10 μm of CCCP (by adding 1 μl of a 200 mm stock solution of CCCP in DMSO to 2 ml of MEM) for 30 min. Photostability test The dye-labelled HeLa cells were imaged by confocal microscope (Zeiss laser scanning confocal microscope LSM7 DUO). Conditions: excitation wavelength = 405 nm and emission filter = 560 620 nm (TPE-Py-NCS); excitation wavelength = 560 nm and emission filter = 580 680 nm (MTR). Laser powers were unified as 50 μw. Mitophagy induction and monitoring The HeLa cells were grown overnight on a 35 mm petri dish with a cover slip. The cells were incubated either in TPE-Py-NCS (5 μm) and LTR (150 nm) mixtures or MTR (50 nm) and LTG (150 nm) mixtures for 15 min. The cells were rinsed with PBS for 3 times. Rapamycin (50 μg/ml) was then added to induce mitophagy. Time-dependent confocal images were collected on a laser scanning confocal microscopy. Excitation wavelength: 405 nm (TPE-Py-NCS), 488 nm (LTG) and 560 nm (MTR and LTR); emission filter: 490 580 nm (LTG), 560 620 nm (TPE-Py-NCS and LTR) and 580 620 nm (MTR). S6

Scheme S1 Synthetic route to TPE-Py-NCS. A 10 8 6 4 2 0 Chemical shift (ppm) B 160 140 120 100 80 60 40 20 0 Chemical shift (ppm) Fig. S1 (A) 1 H and (B) 13 C NMR spectra of TPE-Py-NCS in DMSO-d 6. S7

PL intensity (au) % cyl-tpe-py-ncs, MW=549/144, DCTB, LP20 tan121121_2 12 (0.400) Cn (Cen,4, 50.00, Ar); Sb (15,10.00 ); Sm (SG, 2x3.00); Cm (6:15) 100 549.2360 TOF LD+ 160 550.2363 551.2395 552.2424 664.8649 694.1785 479.6761 87.9727 196.7458 311.5199 429.7497 541.9932 913.3053 709.0138 768.3362 232.2543 349.8452 854.2133 99.3421 962.9129 0 m/z 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 Fig. S2 High resolution mass spectrum of TPE-Py-NCS. 3.2x10 4 2.4x10 4 (M -1 cm -1 ) 1.6x10 4 8.0x10 3 0.0 300 450 600 750 900 Wavelength (nm) Fig. S3 Absorption and PL spectra of TPE-Py-NCS in DMSO. Concentration: 10 μm. S8

Intensity (au) PL intensity PL intensity A 99% B 0% 60% 500 600 700 800 0 20 40 60 80 100 Wavelength(nm) % PBS fraction (f p ) Fig. S4 PL spectra of TPE-Py-NCS in DMSO/PBS mixtures with different PBS fractions (f p ) (B) Plot of PL intensity at 598 nm versus the composition of the DMSO/PBS mixture of TPE-Py-NCS. Concentration: 10 μm; excitation wavelength: 405 nm. A B 10 100 1000 Particle size (nm) 10 100 1000 10000 Particle size (nm) Fig. S5 Size distribution of TPE-Py-NCS aggregates in (A) DMSO/water mixtures with 99% water fraction and (B) DMSO/PBS mixtures with 99% PBS fraction. Concentration: 10 M. S9

Cell viability (%) 100 80 60 40 20 0 0.0 2.5 5.0 7.5 [TPE-Py-NCS] ( M) Fig. S6 Cell viability of HeLa cells incubated with different concentration of TPE-Py-NCS. Fig. S7 Molecular structure of MitoTracker Red CMCRos. S10

Fig. S8 Fluorescent images of HeLa cell stained with TPE-Py-NCS (5 μm) for 15min. The stained cells (A) are without any treatment, (B) are fixed with 4% PFA and (C) are fixed with 4% PFA followed by washing three times with DMSO. scale bar: 20 μm. Fig. S9 Fluorescent images of HeLa cells stained with TPE-Py-NCS (A) untreated and (B) treated with CCCP after dye staining. Concentration: 5 μm (TPE-Py-NCS) and 10 μm (CCCP); excitation wavelength: 330 385 nm. All the images share the same scale bar: 20 μm. S11

Fig. S10 (A and C) Bright-field and (B and D) fluorescent images of HeLa cells stained with LysoTracker Red DND-99 for 30 min after incubated in (A and B) PBS and (C and D) PBS with rapamycin for 1 h. Concentration: 150 nm (LysoTracker Red DND-99), 50 g/ml (rapamycin); excitation wavelength: 540 580 nm. All the images share the same scale bar = 20 μm. Fig. S11 Confocal images of HeLa cells co-stained with (A) MTR (50 nm) and LysoTracker Green DND-26 (150 nm), and (B) TPE-Py-NCS (5 μm) and LysoTracker Red DND-99 (150 nm) in the presence of rapamycin (50 mg/ml). Scale bar: 20 μm. Reference 1 H. Shi, N. Zhao, D. Ding, J. Liang, B. Z. Tang, B. Liu, Org. Biomol. Chem., 2013, 11, 7289. S12