Associations between Two Polymorphisms (FokI and BsmI) of Vitamin D Receptor Gene and Type 1 Diabetes Mellitus in Asian Population: A Meta-Analysis

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Associations between Two Polymorphisms (FokI and BsmI) of Vitamin D Receptor Gene and Type 1 Diabetes Mellitus in Asian Population: A Meta-Analysis 1 2 1 2 2 2 2 * Guofeng Wang, Qingqing Zhang, Ning Xu, Kuanfeng Xu, Jian Wang, Wei He, Tao Yang 1 Department of Endocrinology Medicine, Lianyungang First People s Hospital, Affiliated Hospital of Xuzhou Medical College, Lianyungang, China, 2 Department of Endocrinology Medicine, The Fist Affiliated Hospital of Nanjing Medical University, Nanjing, China Abstract Background: Vitamin D receptor (VDR) gene polymorphisms are possibly involved in the development of type 1 diabetes mellitus (T1DM). However, the results to date have been inconclusive. We performed a meta-analysis to examine the association between 2 polymorphisms (FokI and BsmI) of the VDR gene and T1DM in the Asian population. Methods: Literature was retrieved from PubMed, Web of Science, CBM, Embase and Chinese databases. Pooled odds ratios (ORs) with 95% confidence intervals (CIs) were calculated using a random or fixed effect model. Results: In total, 20 papers (BsmI: 13 studies; FokI: 13 studies) were included. In contrast to the FokI polymorphism, the BsmI polymorphism was associated with an increased risk of T1DM in the Asian population (OR = 1.47, 95% CI = 1.13 1.91, P = 0.004 for B vs. b). Upon stratification by regional geography, an increased risk of T1DM in association with the BsmI polymorphism was observed in the East Asian population (OR = 1.97, 95% CI = 1.38 2.83, P,0.001 for B vs. b), whereas the FokI polymorphism was associated with an increased risk of T1DM in the West Asian population (OR = 1.45, 95% CI = 1.12 1.88, P = 0.004 for F vs. f). Conclusions: Our meta-analysis suggests that the BsmI polymorphism may be a risk factor for susceptibility to T1DM in the East Asian population, and the FokI polymorphism is associated with an increased risk of T1DM in the West Asian population. However, because the study size was limited, further studies are essential to confirm our results. Citation: Wang G, Zhang Q, Xu N, Xu K, Wang J, et al. (2014) Associations between Two Polymorphisms (FokI and BsmI) of Vitamin D Receptor Gene and Type 1 Diabetes Mellitus in Asian Population: A Meta-Analysis. PLoS ONE 9(3): e89325. doi:10.1371/journal.pone.0089325 Editor: Junwen Wang, The University of Hong Kong, Hong Kong Received October 4, 2013; Accepted January 19, 2014; Published March 6, 2014 Copyright: ß 2014 Wang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: The authors have no support or funding to report. Competing Interests: The authors have declared that no competing interests exist. * E-mail: yangt@njmu.edu.cn Introduction Type 1 diabetes mellitus (T1DM) is a T-cell-mediated autoimmune disease, resulting from autoimmune destruction of b-cells of the pancreas. Although the complicated mechanisms involved in T1DM remain unclear, it is well known that T1DM is caused by complex interactions between many genetic and environmental factors. So far, several gene polymorphisms have been demonstrated to be associated with the risks of T1DM, including the human lymphocyte antigen (HLA) gene, the regulatory region of the insulin gene and the interleukin-1 receptor type 1 (IL1R1) gene, cytotoxic T lymphocyte associated-4 (CTLA- 4) gene and the vitamin D receptor (VDR) gene. Among these susceptibility genes, the VDR gene is one of the most widely studied and increasing evidence suggests that vitamin D and its receptor are possibly related to T-cell-mediated autoimmune disease and influence susceptibility to T1DM. The VDR is found in almost all cells of the immune system, especially the antigen-presenting cells (macrophages and dendritic cells) and activated T lymphocytes. It is increasing acknowledged that vitamin D is a potent modulator of the immune system and is involved in regulating cell proliferation and differentiation, lymphocyte activation and cytokine production [1,2], and it plays a central role in the pathogenesis and progression of T1DM. Previous epidemiologic and experimental data indicate that taking vitamin D supplements in early childhood and high vitamin D intake may be inversely associated with the risk of T1DM incidence, and treatment with large doses of vitamin D over long periods in non-obese diabetic NOD mice has been known to prevent the disease [3]. Because vitamin D exerts it action at a cellular level through binding to the VDR, which is an intracellular hormone receptor belonging to the steroid hormone receptor superfamily, the VDR gene has become a candidate gene for T1DM. The human VDR gene is located on chromosome 12q12 q14. It has at least 5 promoter regions, 8 protein-coding exons and 6 untranslated exons, which are alternatively spliced into FokI (in exon 2), BsmI and ApaI (both in intron 8) and TaqI (in exon 9). In the past decades, a series of studies have investigated the association between FokI (rs10735810) and BsmI (rs1544410) common single nucleotide polymorphisms (SNPs) and T1DM risk but the findings have been conflicting. In 2006, Guo et al [4] did PLOS ONE www.plosone.org 1 March 2014 Volume 9 Issue 3 e89325

not identify any genetic variant associated with T1DM in either case-control studies or family transmission. But subsequent reanalysis of this data by Ponsonby et al [5] in 2008, incorporating adjustment for regional ultraviolet(uv) radiation, supported an association between VDR gene polymorphisms and T1DM risk. In 2012, Zhang et al [6] further explored the association between VDR gene polymorphisms and T1DM by ethnical subgroup and confirmed that the BsmI polymorphism was associated with an increased risk of T1DM in the Asian subgroup, with no significant association found in other populations for FokI polymorphisms. However these results were still inconclusive and did not report the regional geography-specific effects on the risk of T1D, In addition, data from a number of Asian studies published in the past few years [7 10], should also be included. To confirm the association between 2 common polymorphisms (FokI and BsmI) in the VDR gene and T1DM susceptibility in Asian population, and to investigate regional geography-specific effects with T1DM, we performed an updated meta-analysis. Materials and Methods Literature and Search Strategy To identify studies that investigated the association between T1DM susceptibility and VDR polymorphisms, the databases PubMed, Web of Science, CBM, Embase, Chinese Biomedical Literature Database, Chinese National Knowledge Infrastructure (CNKI) and Chinese Wanfang Data were searched independently by 2 reviewers. The last updated search was performed on March 29, 2013. The following search terms were used: (vitamin D receptor or VDR) AND (polymorphism or variation or mutation) AND (type 1 diabetes mellitus or IDDM or autoimmune diabetes). Studies published in English and Chinese were considered in our meta-analysis. Inclusion Criteria and Data Extraction The studies were included only if they met all the following inclusion criteria: (1) evaluation of 2 polymorphisms in the VDR gene and T1DM risk; (2) a case-control study design and (3) genotype distributions in both cases and controls available for estimating an odds ratio (OR) with 95% confidence interval (CI). Studies were excluded if they were case-only reports or review papers or the study was based on pedigree data. When the data were duplicated and had been published more than once, only the most recent and complete study was used. The following information was extracted from each study: (1) name of first author; (2) year of publication; (3) country of origin; (4) ethnicity of the study population; (5) gender distribution and mean age of subjects in cases and controls; (6) mean age of onset in cases; (7) genotype distributions in cases and controls; (8) P values for the test of Hardy Weinberg equilibrium (HWE) in controls; (9) diagnostic criteria and (10) manner in which the controls were selected. Two authors independently assessed the articles for compliance with the inclusion criteria, and disagreement was followed by discussion or a third reviewer was asked to assess those articles until consensus was reached. When further information was required from a potentially relevant manuscript, the corresponding authors were contacted by the reviewers. Quality Assessment of Included Studies The quality of the included studies was also independently assessed by 2 authors using the procedure known as extended quality score, which was used in the study by Xu et al [11] and based on the recommendations of the MOOSE guidelines and other related meta-analytic studies. The procedure with 11 items stems from epidemiological and genetic considerations and the full score is 14 points. Studies were categorized as high quality if the score was $11 points, medium if the score was,11 and $7 points and poor if the score was,7 points. Statistical Analysis The strength of association between VDR polymorphisms and T1DM risk was assessed by ORs with a 95% CI. The HWE of the genotype distribution of controls was assessed via the x2 goodnessof-fit test. The genetic models evaluated for pooled ORs of these polymorphisms were the additive model (A vs. G), the codominant model (AA vs. AG and AA vs. GG), the dominant model (GG vs. AA+AG) and the recessive model (AA vs. AG+GG). Statistical analysis was conducted by subgroup divisions on the basis of regional geography. The significance of the pooled ORs was determined using Z tests (with P,0.05 considered statistically significant). The heterogeneity among studies was evaluated by the Q statistic test and I 2 statistic test. P values,0.05 or I 2.50% indicated that heterogeneity existed among studies, and the pooled OR of each study was calculated by the random effects model (REM), because it is more appropriate when there is significant heterogeneity. Otherwise, the fixed effects model FEM was used. If heterogeneity existed among studies, we used meta-regression to explore the source. The potential publication bias was estimated using Begg s funnel plot and Egger s test (with P,0.05 considered statistically significant). If publication bias existed, the Duval and Tweedie nonparametric trim and fill method was used to adjust the findings. Sensitivity analysis was performed to evaluate quality and consistency of the results. Data analysis was performed using STATA version 11.0 software. Results Eligible Studies and their Characteristics The detailed steps of our literature search are shown in Figure 1. Based on the search strategy and inclusion criteria, 20 papers were included in the meta-analysis of the association between polymorphisms in the VDR gene and T1DM risk between 1996 and March 29, 2013[7 10,12 27]. There were 13 studies (1,973 cases and 1,986 controls) for the BsmI polymorphism and 13 studies (2,538 cases and 2.679 controls) for the FokI polymorphism. The characteristics of the studies are listed in Table S1. Genotype and allele distributions for each study are listed in Table 1. Among these studies, T1DM was diagnosed according to different criteria. World Health Organization criteria were used in 10 studies; American Diabetes Association criteria were used in 4 studies; National Diabetes Data Group & International Work Group 1997 criteria were used in 1 study and 2 studies did not note the diagnostic criteria. All the included studies contained analysis of the VDR gene polymorphism by polymerase chain reaction restriction fragment length polymorphism (PCR RFLP). At the same time, all studies categorized the score as medium or high quality, with the exception of 2 studies. [14,23], in which the detailed quality assessment criterion and quality score are listed in Tables S2 and S3. Quantitative Synthesis A summary of the meta-analysis of the association between VDR gene polymorphisms and T1DM risk is provided in Table 2. BsmI Polymorphism A total of 1,973 T1DM cases and 1,986 controls in 13 casecontrol studies were included in the meta-analysis for the relationship between the BsmI polymorphism and T1DM risk. PLOS ONE www.plosone.org 2 March 2014 Volume 9 Issue 3 e89325

Figure 1. Selection of articles for inclusion in the meta-analysis. doi:10.1371/journal.pone.0089325.g001 Of these, 8 case-control studies were from the East Asian population, 1 was from the South Asian population and 4 were from the West Asian population. Our meta-analysis showed a significant overall association between the BsmI polymorphism and T1DM risk in all models (additive REM: OR = 1.47, 95% CI = 1.13 1.91, P = 0.004(Figure 2); dominant REM: OR = 0.44, 95% CI = 0.29 0.65, P,0.001; recessive FEM: OR = 1.72, 95% CI = 1.16 2.57, P = 0.004; codominant FEM: OR = 1.45, 95% CI = 1.09 1.91, P = 0.01 for BB vs. Bb; OR = 2.23, 95% CI = 1.62 3.07, P,0.001 for BB vs. bb). Upon stratification by regional geography, significantly increased risks were found among the East Asian population (additive REM: OR = 1.97, 95% CI = 1.38 2.83, P,0.001; dominant REM: OR = 0.36, 95% CI = 0.20 0.63, P,0.001; recessive FEM: OR = 3.20, 95% CI = 1.39 7.33, P#0.001;codominant FEM: OR = 1.75, 95% CI = 1.09 2.82, P = 0.022 for BB vs. Bb; OR = 4.71, 95% CI = 2.44 9.08, P,0.001 for BB vs. bb). However, there were no statistically significant correlations between BsmI polymorphisms and the South or West Asian populations. Thus, the East Asian variant allele B carriers may have a higher risk of T1DM. A summary of the results of the genetic model comparisons is shown in Table 2. FokI Polymorphism A total of 2,538 cases and 2,679 controls were included in the meta-analysis for the relationship between the FokI polymorphism and T1DM risk. Of these, 5 studies were from the West Asian population, 7 were from the East Asian population and 1 was from the South Asian population. Overall, the FokI polymorphism was not associated with the risk of T1DM (additive REM: OR = 1.14, 95% CI = 0.92 1.41, P = 0.234 (Figures 3); dominant REM: OR = 0.77, 95% CI = 0.49 1.22, P = 0.271; recessive REM: OR = 1.16, 95% CI = 0.90 1.51, P = 0.26; codominant REM: OR = 1.16, 95% CI = 0.91 1.48, P = 0.226 for FF vs. Ff; OR = 1.11, 95% CI = 0.91 1.36, P = 0.31 for FF vs. ff). However, upon stratification by regional geography, the FokI polymorphism was associated with the risk of T1DM in the West Asian population (additive REM: OR = 1.45, 95% CI = 1.12 1.88, P = 0.004; dominant REM:OR = 0.24, 95% CI = 0.06 1.02, P = 0.0271; recessive REM: OR = 1.46, 95% CI = 1.11 1.92, P = 0.006;codominant REM: OR = 1.44, 95% CI = 1.06 1.96, P = 0.019 for FF vs. Ff; OR = 1.45, 95% CI = 1.12 1.88, P = 0.004 for FF vs. ff). A summary of the genetic model comparisons is shown in Table 2. PLOS ONE www.plosone.org 3 March 2014 Volume 9 Issue 3 e89325

Table 1. Distribution of VDR genotype and the allele among T1DM patients and controls. First author Country Year Case Control HWE BsmI BB Bb bb B b BB Bb bb B b Chang [12] China 2000 4 16 137 24 290 1 16 231 18 478 Yes Motohashi [15] Japan 2003 12 64 127 88 318 1 49 172 51 393 Yes Liu [21] China 2003 31 103 91 165 285 110 305 403 525 1111 No Shen [22] China 2004 0 11 24 11 59 0 7 45 7 97 Yes Xiao [26] China 2006 1 4 49 6 102 0 1 81 1 163 No Shi [24] China 2007 1 20 22 22 64 1 18 177 20 372 Yes Shimada [25] Japan 2008 32 165 577 229 1319 7 121 471 135 1063 Yes Israni [18] India 2009 79 120 37 278 194 56 94 47 206 188 Yes Kocabas [19] Turkey 2010 1 14 75 16 164 0 16 70 16 156 Yes Cheng [27] China 2010 43 11 0 97 11 82 19 1 183 21 Yes Gogas Yavuz [17] Turkey 2011 20 57 40 97 137 14 59 61 87 181 Yes Mohammadnejad [8] Iran 2012 11 36 40 58 116 9 45 46 63 137 Yes Bonakdaran [7] Iran 2012 14 26 29 54 84 16 11 40 43 91 Yes FokI FF Ff ff F f FF Ff ff F f HWE Ban [13] Japan 2001 52 52 6 156 64 82 138 30 302 198 No Yokota [14] Japan 2002 50 46 12 146 70 41 59 20 141 99 Yes Shen [22] China 2004 5 14 16 24 46 18 24 10 60 44 Yes Liao [20] China 2005 18 49 18 85 85 64 74 28 202 130 Yes Du [16] China 2008 64 130 47 258 224 123 189 68 435 325 Yes Sheng [23] China 2009 39 36 5 114 46 25 41 14 91 69 Yes Israni [18] India 2009 142 79 15 363 109 116 76 5 308 86 Yes Kocabas [19] Turkey 2010 32 57 1 121 59 18 52 16 88 88 Yes Xie [9] China 2012 125 211 101 461 413 135 209 86 479 388 Yes Sahin [10] Iran 2012 54 31 0 139 31 43 28 9 114 46 No Gogas Yavuz [17] Turkey 2011 61 46 10 168 66 60 63 11 183 85 Yes Mohammadnejad [8] Iran 2012 49 33 5 131 43 55 40 5 150 50 Yes Bonakdaran [7] Iran 2012 38 25 6 101 37 18 20 7 56 34 Yes doi:10.1371/journal.pone.0089325.t001 Sensitivity Analysis and Publication Bias Sensitivity analysis was performed to assess the influence of each individual study on the pooled OR by repeating the meta-analysis sequentially excluding 1 study at a time; the analysis results suggested that the pooled ORs were not significantly affected (data not shown), indicating a statistically robust result. The funnel plots were inspected for geometry and were found to be symmetrical, and no publication bias was detected by either Begg s funnel plot (Figure S1) or the Egger s test in each meta-analysis. Tabel 2. Summary ORs and 95% CIs of the association between VDR gene polymorphism and type 1 diabetes mellitus risk. SNPs Regional geograph A vs a AA vs Aa+aa aa vs AA+Aa AA vs Aa AA vs aa OR(95%CI) P OR(95%CI) P OR(95%CI) P OR(95%CI) P OR(95%CI) P BsmI overall 1.47(1.13,1.91) 0.004 1.72(1.16,2.57) 0.004 0.44(0.29,0.65),0.001 1.45(1.09,1.91) 0.01 2.23(1.62,3.07),0.001 East Asian 1.97(1.38,2.83),0.001 3.20(1.39,7.33),0.001 0.36(0.20,0.63),0.001 1.72(0.91,3.26) 0.022 4.71(2.44,9.08) 0.038 West Asian 0.90(0.52,1.56) 0.704 1.32(0.83,2.10) 0.704 0.52(0.20,1.36) 0.185 1.75(1.09,2.82) 0.097 1.75(1.07,2.85) 0.027 FokI overall 1.14(0.92,1.41) 0.234 1.16(0.90,1.51) 0.26 0.77(0.49,1.22) 0.271 1.16(0.91,1.48) 0.226 1.11(0.91,1.36) 0.789 East Asian 1.00(0.74,1.35) 0.995 0.99(0.65,1.51) 0.961 0.99(0.65,1.50) 0.947 0.90(0.69,1.43) 0.967 0.96(0.73,1.26) 0.657 West Asian 1.45(1.12,1.88) 0.004 1.46(1.11,1.92) 0.006 0.24(0.06,1.02) 0.052 1.44(1.06,1.96) 0.019 1.45(1.12,1.88) 0.004 SNPs: single nucleotide polymorphisms. A represent B allele and a represent b allele for BsmI, A present F allele and a represent f allele for FokI, respectively. doi:10.1371/journal.pone.0089325.t002 PLOS ONE www.plosone.org 4 March 2014 Volume 9 Issue 3 e89325

Figure 2. Meta-analysis for the association between T1DM risk and the VDR BsmI polymorphism (B vs b). Each study was shown by a point estimate of the effect size (OR) (size inversely proportional to its variance) and its 95% confidence interval (95%CI) (horizontal lines). The white diamond denotes the pooled OR. doi:10.1371/journal.pone.0089325.g002 Heterogeneity Analyses Significant heterogeneity was observed in most genetic model analyses (Table S4). We observed the pattern of heterogeneity: for BsmI, 9 out of 13 studies showed a positive result, and for FokI, 8 out of 13 studies showed a positive result. Thus, the heterogeneity in this meta-analysis may have resulted from the inclusion of a mixture of studies showing positive, null and inverse associations. To investigate this further, we used meta-regression analysis to determine the source of heterogeneity in publication year, ratio of males in cases and controls, mean age or onset age in cases, sample size in cases and controls, diagnostic criterion and quality scoring. Univariate meta-regression analysis showed that none of the tested covariates could explain the observed heterogeneity. Moreover, when the data were stratified by regional geography, the heterogeneity was not significantly decreased or eliminated. Discussion The two polymorphisms (BsmI, FokI) in the VDR gene have been suggested as potential genetic factors for T1DM. However, the results from published studies are still inconsistent. The discrepancies may be partly attributed to differing genetic backgrounds and environment among various populations. To adjust for potential confounding factors in this meta-analysis, we examined the data by regional stratification across Asian populations. Our meta-analysis found that allele B was significantly associated with T1DM in the East Asian population, whereas FokI polymorphisms were associated with an increased T1DM risk in the West Asian population. Therefore, the BsmI polymorphism may increase the risk of T1DM in the East Asian population and the FokI polymorphism may increase the risk of T1DM in the West Asian population. However, considering the heterogeneity and the limited size of included studies, these results should be interpreted cautiously. Undoubtedly, further large scale case-control studies should be performed. In the present study, the heterogeneity was significant under some genetic models. Moreover, the heterogeneity was not remarkably decreased after stratified analysis or upon exclusion of the studies that deviated from the HWE. These findings were different from those of Zhang et al. [6]. We used the metaregression analysis to attempt to identify sources of heterogeneity; however, we could not find the source among ethnicity, HWE, sample sizes, quality scoring, diagnosis and publication date. Because of the incomplete data, we could not further explore the source of heterogeneity and the impact of these features on the results even by contacting the corresponding authors. However, we hypothesize that the pattern of heterogeneity in this metaanalysis may have resulted from the inclusion of a mixture of studies showing positive, null and inverse associations instead of all studies showing the same association between VDR gene and T1DM. In addition, the sensitivity analysis proved the robustness of our meta-analysis. Considering that environmental factors PLOS ONE www.plosone.org 5 March 2014 Volume 9 Issue 3 e89325

Figure 3. Meta-analysis for the association between T1DM risk and the VDR FokI polymorphism(f vs f). Each study was shown by a point estimate of the effect size (OR) (size inversely proportional to its variance) and its 95% confidence interval (95%CI) (horizontal lines). The white diamond denotes the pooled OR. doi:10.1371/journal.pone.0089325.g003 influence the circulating levels of active vitamin D forms and may modulate genotype-related risk, gene environment interaction may be the cause of heterogeneity in this meta-analysis. Present study has some limitations that require consideration. First, studies have shown that the association between VDR polymorphisms and disease can vary by either past sun exposure or vitamin D level. Our meta-analysis was based on estimates without adjusting for sun exposure or dietary vitamin D intake, which may be one of the potential limitations. Second, lack of further adjustments of environmental risk factors, other covariables, the potential gene environment interactions might bias the present results. Third, because we only searched papers in English or Chinese, the completeness of evidence is impeded by language bias. Fourth, in the stratified analysis by regional geography, only 2 studies concerning the relationship between the BsmI polymorphism and the West Asian population were included; with such a small size, the possibility of finding a reliable association is limited. Thus, the conclusion on the relationship between the BsmI polymorphism and the West Asian population requires further confirmation. Moreover, only 1 study on the South Asia population was currently available for our meta-analysis, and stratified analysis for the South Asian population was not available. Thus, additional studies are needed to evaluate the effect of these functional polymorphisms on T1DM risk in West and South Asian population. In conclusion, the current meta-analysis indicates that the BsmI polymorphism may contribute to T1DM pathogenesis and may help to explain individual differences in the susceptibility to T1DM in the East Asian population. Furthermore, it shows that the FokI polymorphism may confers susceptibility to T1DM in the West Asian population. However, the power is not enough, and large, well-designed epidemiological studies are necessary to carefully explore the roles of VDR gene polymorphisms in the pathogenesis of T1DM in the Asian population. Supporting Information Figure S1 Begg s funnel plot analysis for the comparison of the FokI (A), BsmI (B) alleles. Each point represents an independent study for the indicated association. p value of PLOS ONE www.plosone.org 6 March 2014 Volume 9 Issue 3 e89325

Begg s test was 0.695 and 0.225, respectively (continuity corrected). (TIF) Table S1 Characteristics of the studies included in the meta-analysis. NA means that the data were not available. (DOC) Table S2 Extended quality assessment criteria. Note: the full score is 14 points, if an original study has a quality score greater than or equal to 11 points, it is high-quality designed; and if a quality score less than 7 points, poor-quality designed; and if a quality score greater than or equal to 7 points and less than 11 points, medium-quality designed. References 1. Zhou W, Heist RS, Liu G, Neuberg DS, Asomaning K, et al. (2006) Polymorphisms of vitamin D receptor and survival in early-stage non-small cell lung cancer patients. Cancer Epidemiol Bio-markers Prev 15: 2239 2245. 2. Lee YH, Choi SJ, Ji JD, Song GG. (2012) Vitamin D receptor ApaI, TaqI, BsmI, and FokI polymorphisms and psoriasis susceptibility: a meta-analysis. Mol Biol Rep 39: 6471 6478. 3. Lemos MC, Fagulha A, Coutinho E, Gomes L, Bastos M, E., et al., 2008. Lack of association of vitamin D receptor gene polymorphisms with susceptibility to type 1 diabetes mellitus in the Portuguese population. Hum. Immunol. 69, 134 138. 4. Guo SW, Magnuson VL, Schiller JJ, Wang XJ, Wu Y, et al. (2006) Metaanalysis of vitamin D receptor polymorphisms and type 1 diabetes: a HuGE review of genetic association studies. Am J Epidemiol 164:711 724. 5. Ponsonby AL, Pezic A, Ellis J, Morley R, Cameron F, et al. (2008:) Variation in associations between allelic variants of the vitamin D receptor gene and onset of type 1 diabetes mellitus by ambient winter ultraviolet radiation levels: a metaregression analysis. Am J Epidemiol168: 358 365. 6. Zhang J, Li W, Liu J, Wu W, Ouyang H, et al.(2012) Polymorphisms in the vitamin D receptor gene and type 1 diabetes mellitus risk: An update by metaanalysis. Molecular and Cellular Endocrinology 355: 135 142. 7. Bonakdaran S, Abbaszadegan MR, Dadkhah E, Khajeh-Dalouie M. (2012) Vitamin D receptor gene polymorphisms in type 1 diabetes mellitus: a new pattern from Khorasan province, Islamic Republic of Iran. MHJ 18: 614 619. 8. Mohammadnejad Z, Ghanbari M, Ganjali R, Afshari JT, Heydarpour M, et al.(2011) Association between vitamin D receptor gene polymorphisms and type 1 diabetes mellitus in Iranian population. Mol Biol Rep 39: 831 837. 9. Xie YT, Zhou ZG, Hu F.(2012) Associations of Vitamin D Receptor and Vitamin D Binding Protein Gene Polymorphisms with Type 1 Diabetes in Hunan Hans. Doctor s Thesis of ZhongNan Medical University 1 66. 10. Sahin SB, Cetinkalp S, Erdogan M, Yilmaz C, Berdeli A.(2012)Fas, Fas Ligand, and Vitamin D Receptor FokI Gene Polymorphisms in Patients with Type 1 Diabetes Mellitus in the Aegean Region of Turkey. Genetic testing and molecular biomarkers, 16, 1179 1183. 11. Xu M, Sham P, Ye Z, Lindpaintner K, He L. (2010) A1166C genetic variation of the angiotensin II type I receptor gene and susceptibility to coronary heart disease: collaborative of 53 studies with 20,435 cases and 23,674 controls. Atherosclerosis 213: 191 199. 12. Chang TJ, Lei HH, Yeh JI, Chiu KC, Lee KC, et al.(2000) Vitamin D receptor gene polymorphisms influence susceptibility to type 1 diabetes mellitus in the Taiwanese population. Clin Endocrinol 52: 575 580. 13. Ban Y, Taniyama M, Yanagawa T, Yamada S, Maruyama T, et al.(2001) Vitamin D receptor initiation codon polymorphism influences genetic susceptibility to type 1 diabetes mellitus in the Japanese population. BMC Med Genet 2: 7. (DOC) Table S3 Quality score of included study. HWE: Hardy- Weinberg equilibrium. (DOC) Author Contributions Conceived and designed the experiments: GW TY. Performed the experiments: GW TY QZ. Analyzed the data: GW KX QZ. Contributed reagents/materials/analysis tools: GW JW KX. Wrote the paper: GW KX QZ. 14. Yokota I, Satomura S, Kitamura S, Taki Y, Naito E, et al. (2002)Association between vitamin D receptor genotype and age of onset in juvenile Japanese patients with type 1 diabetes. Diabetes Care 25: 1244. 15. Motohashi Y, Yamada S, Yanagawa T, Maruyama T, Suzuki R, et al.(2003)vitamin D receptor gene polymorphism affects onset pattern of type 1 diabetes. J Clin Endocrinol Metab 88: 3137 3140. 16. Du T, Zhou ZG. (2008) Association of Vitamin D-mediated immunoregulation and VDR gene polymorphism with Autoimmune Diabetes. and type 1 diabetes. Doctor s Thesis of ZhongNan Medical University 1 70. 17. Gogas Yavuz D, Keskin L, Kıyıcı S, Sert M, Yazici D, et al.(2011) Vitamin D receptor gene BsmI, FokI, ApaI, TaqI polymorphisms and bone mineral density in a group of Turkish type 1 diabetic patients. Acta Diabetologica 48: 329 336. 18. Israni N, Goswami R, Kumar A, Rani R. (2009) Interaction of vitamin D receptor with HLA DRB1 0301 in type 1 diabetes patients from North India. PLoS One 4: e8023. 19. Kocabas A, Karagüzel G, Imir N, Yavuzer U, Akcurin S.(2010) Effects of vitamin D receptor gene polymorphisms on susceptibility to disease and bone mineral density in Turkish patients with type 1 diabetes mellitus. J Pediatr Endocrinol Metab 23: 1289 1297. 20. Liao L, Zhou ZG. (2005) The association of vitamin D status with latent autoimmune diabetes in adults. Doctor s Thesis of Central South University 1 128. 21. Liu JL, Wang H. (2003)Vitamin D receptor gene polymorphism and autoantibodies in patients with type 1 diabetes. Doctor s Thesis of Xiehe Medical University 1 62. 22. Shen BS, Qiu MC. (2004)The association of vitamin D receptor gene polymorphism with diabetes mellitus in the Han nationality of Tianjin area. Master s Thesis of Tianjin Medical University 2004; 1 49. Available from: http://d.wanfangdata.com.cn/thesis_y627633.aspx. 23. Sheng ZY, Zhang WW, You L, Cheng JY, Wang YF.(2009) The association of vitamin D receptor gene polymorphism with type 1 diabetes mellitus in Han nationality of Shanghai area. Zhong Guo Tang Niao Bing Za Zhi 17: 666 668. 24. Shi YJ, Shen Y, Cai LQ, Hu F, Yang YY. (2007)Relationship between vitamin D receptor gene polymorphism and diabetes mellitus. Zhong Guo Tang Niao Bing Za Zhi 15: 219 221. 25. Shimada A, Kanazawa Y, Motohashi Y, Yamada S, Maruyama T, et al. (2008) Evidence for association between vitamin D receptor BsmI polymorphism and type 1 diabetes in Japanese. J. Autoimmun 30: 207 211. 26. Xiao XH, Liu ZL, Wang H, Sun Q, Li WH, et al. (2006) Effects of vitamin D receptor gene polymorphisms on susceptibility to type 1 diabetes mellitus. Chin Med Sci J 21: 95 98. 27. Cheng J, Zhai MX, Jiang HW.(2010) Effect of parathyroid hormone and vitamin D receptor gene polymorphisms on bone mineral density in the subjects with diabetes mellitus (Chinese). Zhong Guo Gu Zhi Shu Song Za Zhi 16, 9 12. PLOS ONE www.plosone.org 7 March 2014 Volume 9 Issue 3 e89325