Efficacy of larotrectinib in adolescents and young adults with TRK fusion cancer

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Efficacy of larotrectinib in adolescents and young adults with TRK fusion cancer Soledad Gallego, 1 Valentina Boni, 2 Ulrik Lassen, 3 Anna Farago, 4 Wafik El-Deiry, 5 David Hong, 6 Blanca López-Ibor, 2 Scott Cruickshank, 7 Michael C. Cox, 7 Nora Ku, 7 Deborah Morosini, 8 Alexander Drilon, 9 Shivaani Kummar 10 1 Hospital Universitario Vall d'hebron, Barcelona, Spain; 2 Centro Integral Oncologico Clara Campal, Madrid, Spain; 3 Rigshospitalet, Copenhagen, Denmark; 4 Massachusetts General Hospital, Boston, MA, USA; 5 Fox Chase Cancer Center, Philadelphia, PA, USA; 6 MD Anderson Cancer Center, Houston, TX, USA; 7 Loxo Oncology, South San Francisco, CA, USA; 8 Loxo Oncology, Stamford, CT, USA; 9 Memorial Sloan Kettering Cancer Center, New York, NY, USA 10 Stanford Cancer Center, Stanford University, Palo Alto, CA, USA

Larotrectinib is a selective, CNS-active TRK inhibitor NTRK gene fusions are rare but recurrent oncogenic drivers TRKA/B/C Promoter NTRK1/2/3 5 partner LBD kinase domain 5 partner TRK kinase domain AAAA Amino terminal dimerization domain P Tyr Tyr TRK kinase domain TRK kinase domain P ERK Tyr P Tyr P AKT Larotrectinib is a highly potent small-molecule inhibitor of TRKA, TRKB, and TRKC (5 11 nm IC 50 in cellular assays) Demonstrated activity in CNS disease 1 Liquid formulation allows dosing of children as young as at birth and delivers equivalent pharmacokinetics to capsules CNS, central nervous system 1 Ziegler et al. Br J Cancer. 2018; 119:693 696

Patients with TRK fusion cancer: Integrated dataset Adult phase I Age 18 years Advanced solid tumors SCOUT: pediatric phase I/II Age 21 years Advanced solid tumors NAVIGATE: adult/adolescent phase II basket trial Age 12 years Advanced solid tumors TRK fusion cancer Primary Supplementary n=8 n=2 n=12 n=25 n=35 n=40 n=55 n=67 122 patients with TRK fusion cancer NTRK gene fusion status determined by local CLIA (or similarly accredited) laboratories Primary endpoint Best objective response rate (RECIST 1.1) Secondary endpoints Duration of response Progression-free survival Safety Dosing Single-agent larotrectinib, administered predominantly at 100 mg BID continuously Treatment beyond progression permitted if patient continuing to benefit Data cutoff: 30 July 2018 BID, twice-daily; CLIA, clinical laboratory improvement amendments; RECIST, Response Evaluation Criteria In Solid Tumors Lassen et al. presented at ESMO 2018; Ann Oncol. 2018; 29:(suppl_8 abstr 409O) 3

Integrated dataset: Larotrectinib is efficacious regardless of tumor type Maximum change in tumor size (%) 50 40 30 20 10 0-10 -20-30 -40-50 -60-70 -80-90 -100 93.2 * Infantile fibrosarcoma Soft tissue sarcoma Thyroid Salivary gland Integrated (n=109) ORR (95% CI) 81% (72 88%) Best response PR 63% CR 17% Melanoma Breast Appendix Lung Gastrointestinal stromal tumor Colon Pancreas Cholangiocarcinoma Congenital mesoblastic nephroma Unknown primary Bone sarcoma ## Includes 9 unconfirmed PRs pending confirmation; does not include 13 patients continuing on study and awaiting initial response assessment *Patient had TRKC solvent front resistance mutation (G623R) at baseline due to prior therapy; #Surgical CR; RECIST 1.1. Note: Two patients not shown here. These patients discontinued treatment prior to any post-baseline tumor measurements. CR, complete response; ORR, objective response rate; PR, partial response Lassen et al. presented at ESMO 2018 Investigator response assessments, as of 30 July 2018

Integrated dataset: Larotrectinib is efficacious regardless of age Maximum change in tumor size (%) 50 40 30 20 10 0-10 -20-30 -40-50 -60-70 -80-90 -100 93.2 * Pediatrics (n=36) ORR (95% CI) 92% (78-98%) Best response Adult (n=73) 75% (64 85%) PR 58% 66% Pediatric patients Adult patients ## CR 33% 10% Includes 9 unconfirmed PRs pending confirmation; does not include 13 patients continuing on study and awaiting initial response assessment. Age <21 years *Patient had TRKC solvent front resistance mutation (G623R) at baseline due to prior therapy; #Surgical CR; RECIST 1.1. Note: Two patients not shown here. These patients discontinued treatment prior to any post-baseline tumor measurements. CR, complete response; ORR, objective response rate; PR, partial response Lassen et al. presented at ESMO 2018 Investigator response assessments, as of 30 July 2018

AYA patients with TRK fusion cancer Adult phase I Age 18 years Advanced solid tumors SCOUT: pediatric phase I/II Age 21 years Advanced solid tumors n=3 n=1 21 AYA patients with TRK fusion cancer NTRK gene fusion status determined by local CLIA (or similarly accredited) laboratories Primary endpoint Best objective response rate (RECIST 1.1) Secondary endpoints Duration of response Progression-free survival Safety Dosing NAVIGATE: adult/adolescent phase II basket trial Age 12 years Advanced solid tumors TRK fusion cancer n=17 Single-agent larotrectinib, administered predominantly at 100 mg BID continuously Treatment beyond progression permitted if patient continuing to benefit Data cutoff: 30 July 2018 AYA, adolescent & young adult

Baseline characteristics Characteristic n=21 Gender, n (%) Male Female 11 (52) 10 (48) Median age (range), years 31 (20 39) Age group, n (%) 15 <21 years 21 30 years 31 39 years Tumor type, n (%) Salivary gland Soft tissue sarcoma Lung Thyroid Breast Bone sarcoma Cholangiocarcinoma Gastrointestinal stromal tumor Melanoma 1 (5) 8 (38) 12 (57) 5 (24) 5 (24) 3 (14) 3 (14) 1 (5) 1 (5) 1 (5) 1 (5) 1 (5)

Baseline characteristics Characteristic n=21 NTRK gene fusion, n (%) NTRK1 NTRK2 NTRK3 ECOG PS, n (%) 0 1 2 Disease status at study enrollment, n (%) Metastatic Locally advanced Prior cancer treatment, n (%) Surgery Systemic therapy Radiotherapy No. of prior systemic regimens, n (%) 0 1 2 3 9 (43) 0 12 (57) 8 (38) 10 (48) 3 (14) 19 (90) 2 (10) 21 (100) 19 (90) 16 (76) 14 (67) 5 (24) 7 (33) 3 (14) 6 (29) ECOG PS, Eastern Cooperative Oncology Group performance status

High response rate in AYA patients with TRK fusion cancer Maximum change in tumor size (%) 50 40 30 20 10 0-10 -20-30 -40-50 -60-70 -80-90 -100 93.2 Gastrointestinal stromal tumor Thyroid Salivary gland AYA patients* n=20 ORR (95% CI) 70% (46 88%) Best response PR 65% CR 5% Breast Bone sarcoma Lung Soft tissue sarcoma Cholangiocarcinoma *Evaluable patients; includes 1 unconfirmed PR pending confirmation; does not include 2 patients- 1 patient continuing on study and awaiting initial response assessment, and 1 patient discontinued treatment prior to any post-baseline tumor measurements; RECIST 1.1. CR, complete response; ORR, objective response rate; PR, partial response Investigator response assessments, as of 30 July 2018

High response rate in AYA patients with TRK fusion cancer Maximum change in tumor size (%) 50 40 30 20 10 0-10 -20-30 -40-50 -60-70 -80-90 -100 93.2 AYA patients* n=20 ORR (95% CI) 70% (46 88%) Best response NTRK1 PR 65% CR 5% TPM3 LMNA TPR IRF2BP2 NTRK3 ETV6 SQSTM1 SPECC1L *Evaluable patients; includes 1 unconfirmed PR pending confirmation; does not include 2 patients- 1 patient continuing on study and awaiting initial response assessment, and 1 patient discontinued treatment prior to any post-baseline tumor measurements; RECIST 1.1. CR, complete response; ORR, objective response rate; PR, partial response Investigator response assessments, as of 30 July 2018

Duration of larotrectinib treatment 86% of responding patients and 62% of all patients remain on treatment Median time to response = 1.8 months Treatment ongoing Treatment after progression Time to first response n=21 patients 0 5 10 15 20 25 30 35 40 Overall treatment duration (months) Investigator response assessments, as of 30 July 2018

Sustained responses with larotrectinib: Duration of response* 1 100% 0.75 70% Median follow-up 17.5 months Median DOR not reached Probability 0.5 0.25 Patients at risk 0 0 6 12 18 24 30 36 Months from start of response 13 11 5 3 2 1 0 *In patients with confirmed complete or partial responses DOR, duration of response Investigator response assessments, as of 30 July 2018

Adverse events with larotrectinib: 15% in safety database (n=207) Treatment-emergent AEs (%) Treatment-related AEs (%) Grade 1 Grade 2 Grade 3 Grade 4 Total Grade 3 Grade 4 Total Fatigue 18 15 3 36 <1 18 Dizziness 25 3 1 29 <1 21 Nausea 24 3 1 29 1 15 Constipation 22 5 <1 27 12 Anemia 10 7 10 27 2 11 ALT increased 17 5 3 <1 26 2 <1 21 AST increased 18 5 3 26 1 19 Cough 23 3 <1 26 1 Diarrhea 16 6 1 23 5 Vomiting 17 6 <1 23 10 Pyrexia 12 5 <1 <1 18 1 Dyspnea 10 6 2 18 1 Headache 13 4 16 4 Myalgia 12 3 1 16 <1 7 Peripheral edema 12 4 15 7 11 (9%) of 122 patients with TRK fusion cancer required dose reductions all maintained tumor regression on reduced dose 1 (<1%) of 122 patients with TRK fusion cancer discontinued larotrectinib due to an adverse event AEs, adverse events; ALT, alanine aminotransferase; AST, aspartate aminotransferase As of 30 July 2018

ETV6-NTRK3 fusion papillary thyroid cancer Study baseline Study cycle 3 day 1 Study cycle 7 day 1 33-year-old male with metastatic ETV6-NTRK3 papillary thyroid cancer who had undergone multiple prior surgical resections, and received 2 prior lines of iodine therapy and trametinib/pazopanib Started on larotrectinib 100 mg BID Confirmed partial response by end of cycle 2 with 88% reduction in target lesion size per RECIST 1.1 Continues on larotrectinib and in response, with duration of treatment 33.4+ months as of July 2018

Conclusions Larotrectinib yields a high response rate in AYA patients with TRK fusion cancer, regardless of tumor and fusion type: ORR of 70% (n=21) per investigator assessment At a median follow-up of 17.5 months in the AYA dataset: Median DOR not reached An estimated 70% of responses were ongoing at 12 months Prolonged therapy with larotrectinib appears to be associated with manageable toxicity FDA approved first ever TRK inhibitor (Nov 26 2018); MAA submitted to EMA in August 2018 Genomic profiling with assays capable of identifying NTRK gene fusions should be strongly considered in AYA patients with solid tumors of all histologies when determining systemic treatment options

Acknowledgments We thank the patients and their families, many of whom traveled long distances to participate in these studies These studies are funded by Loxo Oncology, Inc and Bayer AG