This student paper was written as an assignment in the graduate course

Similar documents
This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

Patrick: An Introduction to Medicinal Chemistry 5e Chapter 09

Iron Chelates and Unwanted Biological Oxidations

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

Chapter 7. Heme proteins Cooperativity Bohr effect

This student paper was written as an assignment in the graduate course

The Structure and Function of Biomolecules

This student paper was written as an assignment in the graduate course

Previous Class. Today. Detection of enzymatic intermediates: Protein tyrosine phosphatase mechanism. Protein Kinase Catalytic Properties

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

This student paper was written as an assignment in the graduate course

Water: 1. The bond between water molecules is a(n) a. ionic bond b. covalent bond c. polar covalent bond d. hydrogen bond

Chymotrypsin Lecture. Aims: to understand (1) the catalytic strategies used by enzymes and (2) the mechanism of chymotrypsin

Biology 12 - Biochemistry Practice Exam

This student paper was written as an assignment in the graduate course

Chapter 5: The Structure and Function of Large Biological Molecules

Secondary Structure North 72nd Street, Wauwatosa, WI Phone: (414) Fax: (414) dmoleculardesigns.com

Molecular Radiobiology Module 4 Part #3

Macro molecule = is all the reactions that take place in cells, the sum of all chemical reactions that occur within a living organism Anabolism:

This student paper was written as an assignment in the graduate course

Foundations in Microbiology Seventh Edition

CELLULAR METABOLISM. Metabolic pathways can be linear, branched, cyclic or spiral

Lecture Series 2 Macromolecules: Their Structure and Function

Lecture Series 2 Macromolecules: Their Structure and Function

A. Lipids: Water-Insoluble Molecules

Review of Biochemistry

Adenosine triphosphate (ATP)

WHY IS THIS IMPORTANT?

Free Radicals in Biology and Medicine

Nature of Radiation and DNA damage

Human Hydrogen Peroxide Fluorescent Detection Kit

This student paper was written as an assignment in the graduate course

Macromolecules. 3. There are several levels of protein structure, the most complex of which is A) primary B) secondary C) tertiary D) quaternary

Excerpt from J. Mol. Biol. (2002) 320, :

Metabolism of Nucleotides

The Chemical Building Blocks of Life. Chapter 3

Biological Molecules

Biochemistry: A Short Course

(A) Hydrophobic (B) Hydrophilic (C) Both A & B (D) Amphipathic (E) All of the answers above are correct.

/ The following functional group is a. Aldehyde c. Carboxyl b. Ketone d. Amino

KEY NAME (printed very legibly) UT-EID

Secondary Structure. by hydrogen bonds

Chapter Organic Chemistry. Functional Groups. Chapter The study of the compounds of carbon, not classified as inorganic.

Enzymes what are they?

Sheet #5 Dr. Mamoun Ahram 8/7/2014

Polypeptides. Dr. Mamoun Ahram Summer, 2017

Fatty acids and phospholipids

Lecture Series 2 Macromolecules: Their Structure and Function

This student paper was written as an assignment in the graduate course

CHAPTER 21: Amino Acids, Proteins, & Enzymes. General, Organic, & Biological Chemistry Janice Gorzynski Smith

Life on earth is based on carbon. A carbon atom forms four covalent bonds It can join with other carbon atoms to make chains or rings

Porphyrins: Chemistry and Biology

For questions 1-4, match the carbohydrate with its size/functional group name:

Chapter 2 Part 3: Organic and Inorganic Compounds

PAPER No. : 16 Bioorganic and biophysical chemistry MODULE No. : 25 Coenzyme-I Coenzyme A, TPP, B12 and biotin

Chemistry 2030 Introduction to Organic Chemistry Fall Semester 2012 Dr. Rainer Glaser

Biological Molecules Ch 2: Chemistry Comes to Life

Lecture 3 Biopolymers. Carbohydrates Nucleic Acids Proteins

Introduction to Carbohydrates

Carboxylic Acids and their Derivatives I

Guided Inquiry Skills Lab. Additional Lab 1 Making Models of Macromolecules. Problem. Introduction. Skills Focus. Materials.

Mechanisms of Enzymes

This student paper was written as an assignment in the graduate course

A BEGINNER S GUIDE TO BIOCHEMISTRY

Good Afternoon! 11/30/18

Chapter 3 Guided Reading Notes Carbon and the Molecular Diversity of Life

This student paper was written as an assignment in the graduate course

Mouse Hydrogen Peroxide (H2O2) Fluorescent Detection Kit

P450 CYCLE. All P450s follow the same catalytic cycle of;

Human Anatomy & Physiology C H A P T E R

Metabolism. Metabolism. Energy. Metabolism. Energy. Energy 5/22/2016

Chapter 5 Microbial Metabolism: The Chemical Crossroads of Life

Find this material useful? You can help our team to keep this site up and bring you even more content consider donating via the link on our site.

Analysis & Interpretation. Analysis Questions answer questions on a separate sheet of paper. Name(s): Period: Date:

5.2 Lipids 5.21 Triglycerides 5.22 Phospholipids 5.23 Wax 5.24 Steroids. 5.3 Proteins 5.4 Nucleic Acids

Digestion and Human Health

6/15/2015. Biological Molecules. Outline. Organic Compounds. Organic Compounds - definition Functional Groups Biological Molecules. What is organic?

The. Crash Course. Basically, almost all living things are made up of these 4 Elements: - Carbon (C) - Nitrogen (N) - Hydrogen (H) - Oxygen (O)

Chemistry 107 Exam 4 Study Guide

Hind Abu Tawileh. Moh Tarek & Razi Kittaneh. Ma moun

Chapter 2. Chemical Composition of the Body

Short polymer. Dehydration removes a water molecule, forming a new bond. Longer polymer (a) Dehydration reaction in the synthesis of a polymer

Metabolism. Chapter 8 Microbial Metabolism. Metabolic balancing act. Catabolism Anabolism Enzymes. Topics. Metabolism Energy Pathways Biosynthesis

TRANSLATION. Translation is a process where proteins are made by the ribosomes on the mrna strand.

This student paper was written as an assignment in the graduate course

Transcription:

77:222 Spring 2001 Free Radicals in Biology and Medicine Page 0 This student paper was written as an assignment in the graduate course Free Radicals in Biology and Medicine (77:222, Spring 2001) offered by the Free Radical and Radiation Biology Program B-180 Med Labs The University of Iowa Iowa City, IA 52242-1181 Spring 2001 Term Instructors: GARRY R. BUETTNER, Ph.D. LARRY W. OBERLEY, Ph.D. with guest lectures from: Drs. Freya Q. Schafer, Douglas R. Spitz, and Frederick E. Domann The Fine Print: Because this is a paper written by a beginning student as an assignment, there are no guarantees that everything is absolutely correct and accurate. In view of the possibility of human error or changes in our knowledge due to continued research, neither the author nor The University of Iowa nor any other party who has been involved in the preparation or publication of this work warrants that the information contained herein is in every respect accurate or complete, and they are not responsible for any errors or omissions or for the results obtained from the use of such information. Readers are encouraged to confirm the information contained herein with other sources. All material contained in this paper is copyright of the author, or the owner of the source that the material was taken from. This work is not intended as a threat to the ownership of said copyrights.

Lingjie Zhao Bleomycin 1 Bleomycin: an antitumor antibiotic by Lingjie Zhao Free Radical and Radiation Biology Graduate Program Department of Radiology B-180 ML The University of Iowa Iowa City, IA 52242-1181 For 77:222, Spring, 2001 April 2, 2001 Abbreviations: BlMs, Bleomycins dsb, double strand break ESR, electron spin resonance ssb, single strand break

Lingjie Zhao Bleomycin 2 Tables of contents Abstract... 2 Introduction... 3 Chemical properties of bleomycin... 3 Mechanisms of DNA degradation with BLM... 5 Pulmonary toxicity of BLM... 9 Summary... 9 Reference... 10 Abstract Bleomycins (BLMs) comprise a family of glycopeptides that are antitumor agents. The major components of this family is bleomycin A 2 and B 2. The antitumor activity of bleomycin is due to its ability to cause cellular DNA breakage, a process that requires oxygen and a reduced transition metal, such as Fe(II). Bleomycin can cause pulmonary fibrosis, which is the major and most serious adverse side-effect in BLM uses. This paper will focus on the properties of BLM and the mechanism of BLM action. Finally, the pulmonary toxicity of BLMs is briefly introduced.

Lingjie Zhao Bleomycin 3 Introduction Bleomycins (BLMs), a family of glycopeptide antitumor antibiotics, are widely used in the treatment of lymphomas, head and neck squamous cell carcinoma, and testicular carcinoma. They were first discovered by Umezawa and co-workers from cultures of Streptomyces verticillus in 1962 [1]. BLMs have been used as a chemotherapeutic agent in over 80 countries in the world [1]. Bleomycin A2 and B2 are the major components in this drug [1]. BLM exerts its antitumor function through its ability to induce DNA damage. BLM usually chelates an iron and further combines with an oxygen molecule to form its activated form. The activated Fe(II)BLM abstracts a hydrogen atom from C-4 position of deoxyribose on DNA and finally causes DNA single and double strand breaks [2]. Some single strand breaks may be repaired by the DNA repair system in cells before cells enter mitosis. However, part of the single strand breaks that are not repaired and DNA double strand breaks may cause cell chromosome aberrations and even cell death [2]. The most serious adverse side-effect of BLM in the clinic is its induction of lung injury [3]. This paper will focus on the properties of BLM and the mechanism of DNA damage by BLM. Also, the pulmonary toxicity of BLM will be briefly introduced. Chemical properties of bleomycin 1.Structure of bleomycin The structure of BLM was determined in 1978 [4]. BLMs have the same bleomycinic acid backbone with three major moieties. About 200 different BLMs have been known, most of them differ from one another at their terminal amine moiety. For

Lingjie Zhao Bleomycin 4 example, BLM A 2 contains a dimethylsulfonium propylamine as its terminal amine whereas BLM B 2 contains an agmatine [4]. BLMs A 2 and BLM B 2 are the two major forms in this drug. The structure of BLM comprises three key functional domains (Figure I) [5]. (1) The metal-binding domain, which consists of b-aminoalaninamide, pyrimidine, and b-hydroxyhistidine moieties, is responsible for metal-ion coordination and oxygen activation. Recent studies suggest that this domain also participates in DNA binding. (2) The DNA-binding domain is comprised of the bithiazole ring system and a positively charged carboxyl-teminal substituent. (3) The carbohydrate region is thought to aid in membrane permeability and selective tumor-cell recognition. The structure of the amino acid that acts as a linker between the metal-binding and DNA-binding domains affects the efficiency of DNA degradation and the degree of the antitumor activity [5]. Figure I. Structure of representative bleomycin group antibiotics [5]. 2. Metal-complex of BLM The BLMs can chelate a wide variety of metals including Fe, Cu, Co, Zn and Mn [6]. The iron complexes of BLMs are probably the most important for the effects of

Lingjie Zhao Bleomycin 5 BLMs in vivo. BLM is a bifunctional compound: one function is to bind DNA and another one is to react with DNA [6]. Figure II shows that Fe(II)BLM is a square pyramidal structure with a basal plane that contains a secondary amine nitrogen, a N-4 pyrimidine ring nitrogen, which is the deprotonated peptide bond nitrogen of the histidine region and a histidine imidazole nitrogen. The fifth axial donor has been assigned to the a-amino nitrogen of the β-aminoalanine moiety of BLM and the sixth axial coordination site is occupied by exogenous oxygen [6]. If oxygen reduces, it will form both hydroxyl and superoxide radicals based on spin-trapping data [7]. The positively charged terminal amino group of bleomycin is electrostatically attracted to the negatively charged phosphate group of DNA, and the planar bithiazole group is intercalated into the doublestranded DNA [6]. Figure II. Postulated structure of Fe(II)-bleomycin complex [6]. Mechanisms of DNA degradation with BLM 1. Formation of activated BLM It has been demonstrated that Fe(II) and oxygen are essential cofactors for BLM mediated DNA degradation. The activated BLM is believed to be the DNA attacking species. The activated BLM is formed in several distinct steps. As shown in the

Lingjie Zhao Bleomycin 6 following reactions, Fe(II)BLM is unstable in the presence of dioxygen and reacts rapidly with it to form a ternary complex, HO 2 -Fe(III)BLM (activated FeBLM)[7]. Fe(II) + BLM? Fe(II)BLM (1) 2Fe(II)BLM + O 2 + H +? HO 2 -Fe(III)BLM + Fe(III)BLM (2) Fe(III)BLM + H 2 O 2? HO 2 -Fe(III)BLM + H + (3) The activated FeBLM then reacts with the DNA backbone and generates a C4 carbon radical on deoxyribose that undergoes further reactions to produce strand cleavage [7]. 2. Binding of activated BLM to DNA Experimental evidence suggests that the minor groove of the DNA helix is the binding site for BLM [8]. The moiety on BLM that is responsible for binding to DNA is the bithiazole moiety and its associated amine and/or sulfonium residue. BLM-mediated DNA damage is sequence-specific involving mainly pyrimidine residues in a 3 -position to G such as G-C and G-T [9]. There is evidence that also shows that the metal binding domain contributes to both DNA binding and sequence specificity [9]. It is now believed that the bithiazole is primarily responsible for sequence-independent binding activity, while the metal-binding domain determines the sequence specificity. 3. BLM mediated DNA damage and its mechanism BLM-mediated DNA damage includes single strand breaks (ssb), double strand breaks (dsb) and release of free bases without scission. The ssb and dsb occur on limited sites in DNA. Some single strand breaks may be repaired by the DNA repair system in cells before cells enter mitosis. However, dsb, the release of free bases and

Lingjie Zhao Bleomycin 7 part of ssb that are not repaired may cause cell chromosome aberrations and even cell death [2]. Once activated Fe(II)BLM is formed, BLM begins to initiate DNA damage by abstracting the hydrogen atom at the C4 position of deoxyribose [10]. DNA degradation splits into oxygen-dependent and oxygen-independent pathways, (A) and (B) respectively, see Figure III [10]. Under anaerobic conditions, degradation results in the liberation of free bases and the formation of an oxidatively damaged sugar that cleaves alkali-labile compound [10]. In the presence of oxygen, degradation results in the cleavage of the deoxyribose C3 -C4 bond with the release of a base propenal, the DNA chain is broken with oxidation of the C3 and release of a 5 -phosphate ester, and a 3 -phosphoglycolate group (Figure IV) Figure III. Two pathways to DNA cleavage are induced by Fe(II)BLM [10] The mechanism by which BLM is able to abstract C4 -hydrogen from deoxyribose on DNA is debatable. Studies using ESR confirmed that the oxidation of Fe(II)BLM produced a small amount of hydroxyl radical under the condition of excess of BLM. One model [11], which involves the formation of hydroxyl radicals, proposes that the O 2 Fe(II) BLM complex undergoes hemolytic O-O bond cleavage by a reducing

Lingjie Zhao Bleomycin 8 agent to produce the equivalent of a hydroxyl radical and ( OH)Fe(III) BLM. Alternately, ( OH)Fe(III) BLM is directly formed from Fe(III) BLM by hydrogen peroxide. The ( OH)Fe(III) BLM is thought to be able to abstract the C4 hydrogen from DNA. However, this model has been criticized. Evidence has shown either that BLM can induce extensive unscheduled DNA synthesis in the absence of formation of oxygen radicals [12]. Or that the 10-hydroperoxy-8, 12-octadecadienoic acid-activated-blm does not result in the degree of DNA damage that is correlated with the consumption of the peroxide [12]. Instead, a perferryl species, which is produced by heterolytic O-O cleavage, perhaps is more likely to be responsible for C4 -hydrogen abstraction [12]. Figure IV [11]. Mechanism of DNA degradation induced by the activated BLM-Fe(II)-O 2 complex. The activate complex, initially abstracts a hydrogen atom from the 4 position to produce the unstable intermediate [1] that decomposes in the presence of oxygen to produce the free base propenal [7], leaving a 3 -phosphoglycolate ester [8] and a 5 -phosphate [6] at the free ends of the broken DNA strand [11].

Lingjie Zhao Bleomycin 9 Pulmonary toxicity of BLM Minor adverse reactions to BLM include nausea, vomiting, fever, and occasional allergic reactions. However, the major clinical obstacle for the expanded use of BLM is its propensity to cause pulmonary fibrosis. Mortality from pulmonary toxicity occurs in 1-2% of patients treated [3] and about 2%-3% of patients suffer nonlethal pulmonary fibrosis [3]. The reason for pulmonary toxicity of BLM is still unclear. It seems that alveolar macrophages play a central role in the pulmonary cytokine network and they mediate the initiation of BLM induced fibrosis. Treating macrophages with BLM can increase the secretion of interleukin β 1, tumor necrosis factor α, and prostaglandin E 2 [13]. BLM also stimulates the production of other lymphokines, such as macrophage fibroblast growth factor and transforming growth factor β, both of which can cause the development of an inflammatory response that may lead to fibrosis [13]. In addition to macrophage involvement, endothelial cells are an important in vivo source of transforming factor β and can also release a greater amount of this factor when the cells are coincubated with BLM. Summary Bleomycins (BLMs) are a family of glycopeptide antitumor antibiotics. Bleomycin-induced cell killing is due to its ability to cause cellular DNA breakage. This process involves an iron- and oxygen-dependent redox reaction. In the clinic, the major side-effect for using BLM is its propensity to cause pulmonary fibrosis.

Lingjie Zhao Bleomycin 10 Reference 1. Umezawa H; Maeda K; Takeuchi T; Okami Y. (1996) New antibiotics. Bleomycin A and B. J Antibiot 19:200-209. 2. Povirk LF; Austin MJF. (1991) Genotoxicity of bleomycin. Mutation Res 257:127-143. 3. Comis RL. (1992) Bleomycin pulmonary toxicity: Current status and future directions. Seminars in Oncology. 19:64-76. 4. Fujii A; Takita T; Maeda K; Umezawa H. (1973) New component of bleomycin. J Antibiot 26:396-397. 5. Mao QK; Fulmer P; Li WB; DeRose EF; Petering DH. (1996) Different conformations and site selectivity of HO 2 -Co(III)-bleomycin A 2 Bound to DNA oligomers. JBC 271:6185-6191. 6. Takeuchi T. (1995) Antitumor antibiotics discovered and studied at the institute of microbial chemistry. J Cancer Res Clin Oncol 121:505-510. 7. Fulmer P; Petering DH. (1994) Reaction of DNA-bound ferrous bleomycin with dioxygen: activation versus stabilization of dioxygen. Biochemistry 33:5319-5327. 8. Dedon PC; Goldberg IH. (1992) Free-radical mechanisms involved in the formation of sequence-dependent bistraned DNA lesions by the antitumor antibiotics bleomycin, neocarzinostatin, and calicheamicin. Chem Res Toxicol 5:311-332. 9. Carter BJ; Murty VS; Reddy KS; Wang SN; Hecht SM. (1990) A role for the metal binding domain in determining the DNA sequence selectivity of Febleomycin. J Biol Chem 265:4193-4196. 10. Breen AP; Murphy JA. (1995) Reactions of oxyl radical with DNA. Free Radic Biol Med 18:1033-1037. 11. Bruce AD; ed. (1990) Cancer Chemotherpy. Philadelphia: J.B. Lippincott Company. 12. Natrajan A; Hecht SM; van der Marel GA; van Boom JH. (1990) Activation of Fe(II)-bleomycin by 10-hydroperoxy-8,12-octadecadienoic acid. J Am Chem Soc 112:4532-4538. 13. Lazo JS; Sebti SM. (1994) Bleomucin. In PinedoHM; Longe DL; Chabner BA ed Cancer Chemotherapy and biological Response Modifiers. Amsterdam: Elserier:pp44-50.