Transcept. Forward looking statements. Transcept: preparing for Intermezzo rtcommercialization PHARMACEUTICALS, INC.

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Fie 8-K - FDRM Pharmaceuticals Inc E1313745EISk htm Exhibit 99.1 PHARMACEUTICALS, INC. A specialty pharmaceutical company focused on the development and commercialization of proprietary products to address important therapeutic needs in the field of neuroscience March 2012 Forward looking statements This presentation contains forward-looking statements that involve substantial risks and uncertainties. All statements, other than statements of historical facts, included in this presentation are forward-looking statements_ Examples of such statements include our expectation regarding the potential market for Intermezzo and the potential market size for a middle of the night sleep aid; our expectations regarding an ideal therapeutic; the average value of a branded insomnia prescription and the resulting revenue for each 1% of market share; Purdue plans to hire 275 sales representatives to exclusively promote Intermezzo; Purdue plans to invest approximately $100 million to support sales and marketing over the first 12 months of commercialization of Intermezzo in the U.S.; the expected timing for and the success of the commercial launch of Intermezzo by Purdue in the U.S.; the receipt of royalty and milestone payments from Purdue pursuant to our Collaboration Agreement; anticipated reimbursement coverage; intellectual property protection being obtained and maintained; plans for the Phase 2 study of TO-2061, including the expected timing of clinical trial results; and our expectations regarding the potential market size for TO-2061 as augmentation treatment for patients with OCD. All of these forward-looking statements are based on estimates and assumptions by our management that, although we believe to be reasonable, are inherently uncertain_ Forward-looking statements involve risks and uncertainties, including, but not limited to, achieving acceptance of Intermezzo by physicians, patients and third-party payors; supplying sufficient quantities of Intermezzo from third-party manufacturers and suppliers to meet anticipated market demand; the impact of competitive products and the market for Intermezzo generally; our dependence on Purdue's commercialization efforts and our Collaboration Agreement with Purdue; obtaining, maintaining and protecting regulatory exclusivity and intellectual property protection for Intermezzo; competitive product commercialization; manufacturing and supply risks for TO-2061; adverse patent decisions at the USPTO or in court; and variability in the business of generally. These and other risks are described in greater detail in the "Risk Factors" section of periodic reports filed with the Securities and Exchange Commission. Forward-looking statements do not reflect the potential impact of any future in-licensing, collaborations, acquisitions, mergers, dispositions, joint ventures, or investments may enter into or make. does not assume any obligation to update any forward-looking statements, except as may he required by law_ 2 PIO.R.Giut,C.S. : preparing for Intermezzo rtcommercialization Therapeutic focus Neuroscience / psychiatry Large markets, unmet needs Commercial platform Intermezzo: middle of the night awakenings TO-2061: treatment resistant OCD U.S. primary care partnership: Purdue Pharma Option to co-promote Intermezzo 1 yr post launch

Strong balance sheet 9/30/11: $54 M cash, equivalents & investments $10M milestone paymentfrom Purdue: Q4 2011 No debt Near term catalysts Intermezzo product launch: early April 2012 TO-2061 Phase 2 results: estimated Q1 2013 PHARMACEUTICALS... Intermezzo (zolpidem tartrate) sublingual tablet C-IV PHARMAGe1.10.2. INC Intermezzo: the first and only prescription sleep aid approved for middle-of-the-night dosing Indication statement as approved by FDA: Intermezzo is indicated for use as needed for the treatment of insomnia when a middle-of-the-night awakening is followed by difficulty returning to sleep. Intermezzo is not indicated for the treatment of middleof-the-night insomnia when the patient has fewer than 4 hours of bedtime remaining before the planned time of waking. RHARMAGel.11-10ALS..0 Intermezzo: the first and only prescription sleep aid approved for middle-of-the-night dosing

.14:4 Intermezzo' axm.mumovrm.e ineei Intermezzo' ImpolillkorgAtd PPIXAMIAGELOWALS. ISO. Middle of the night (MOTN) awakening: a major unmet medical need in the insomnia category Large U.S. insomnia market 79 million new and refill prescriptione Insomnia is an under-treated condition (2) 11 million patients receive Rx (3 4x to 6x more are not diagnosed or treated by a physician (3 MOTN awakening: the most common insomnia symptom ( 4 ) 35% of Americans suffer from MOTN awakenings at least 3x / week (4) - >90% report awakenings persist more than six months; 50% report awakenings persist more than five years(5 ) (1) IMS Oct 2212 to Sep 2011; (2) Institutes of Medicine-Sleep disorders and sleep deprivation Apr_ 2006; (3) BluePrint Research Group; (4) Ohayon, Nocturnal awakenings and cornorhid disorders in the American general population_ J of Psych Research (2009); (5) Ohayon, Difficulty in resuming or inability to resume sleep and the links to daytime impairment, J of Psych Research (2009). 7 PMARMAGEUTMALS..0 Commonly prescribed sleep aids are indicated only for bedtime use MOTN awakenings typically do not occur every night 7-8 hr sleep aids (Anibien, Ambien CR, Lunesta ) require bedtime prophylactic dosing to prevent awakenings An ideal therapeutic would: Be used only at the time patients need help returning to sleep, not every night in advance of a problem that may not occur Return patients to sleep rapidly Be effective despite the low dose necessary to avoid next day residual effects when used in the middle of the night

PHARMACEUTICALS. MC Intermezzo: the first and only sleep aid approved for middle-of-the night dosing Novel zolpidem formulation Sublingual tablet Bicarbonate-carbonate buffers Approved dose 1.75 mg in women & patients > 65 years 3.5 mg in non-elderly men Rapidly absorbed in both men and women Effective vs. placebo in sleep laboratory & outpatient studies Instructions to patients Take Intermezzo "while in bed" "When you wake up in the morning, be sure that at least 4 hours have passed since you have taken Intermezzo and you feel fully awake before driving. Do not do dangerous activities until you know how Intermezzoaffects you." PHARMACEUTICALS. inc Intermezip (ZOLPIDEM TARTRATE) sublingual tablet G PHARMACEUTICALS. inc Significant Rx insomnia market opportunity: each 1% share - $130M at branded prices U.S. insomnia market 79 million TRx per year s Branded pricing $5 to $6 per tablet 2 30 tablets per Rx 3 Average Rx value: $165

I lyijuli IGLIUCII I I IC1I P.GL penetration I /0 II ILGI II IGG_LIJ J I ICU G 790,000 TRx, approx $130M sales 11 (1) IMS Health, National Prescription Audit, Sept 2011; (2) Wolters Kluwer WAC pricing (branded) Jan 2011, $5.05 to $5.67 (products evaluated: Ambiene, Ambien CRC, Lunesta''', Sileno0; Ambien e and Ambien CR C are currently available in generic form; Luneste WAC pricing was $6.13); (3) estimate based on IMS Health, National Prescription Audit, Sept 2011. Intermezzo launch plans Initial shipments and physician promotion planned for early April 2012 Purdue plans to invest -$100M during first 12 months of Intermezzo launch -275 field representatives in new national sales force devoted exclusively to the promotion of Intermezzo to highest insomnia prescribers PURDUE Purdue began contacting drug wholesaler, retailer and managed care decision makers in early 2012 PMARMAGELOWALS. Purdue commercialization agreement: key benefits Co-promote option: foundation for a commercial future option: co-promote to psychiatrists can begin as early as 1 year and as late as 4.5 years after Purdue launch Royalty structure Base royalty: mid-teens up to mid 20% level on net sales Co-promote royalty: 22% to 40% on psychiatrist Rx net sales, based on timing of opt-in Net revenue qualifying for this additional co-promote royalty is capped at 15% of total Intermezzo annual net U.S. sales Milestone payments - $10M for first formulation patent listed in Orange Book, paid in Q4 2011 - Up to $80M additional upon the achievement of certain patent milestones and net sales targets PHARMACEUTICALS. Intermezzo managed markets advisory board with

decision makers covering >1TUM lives Broad formulary access expected Unmet medical need generally recognized by payers - Unique insomnia indication - Low dose used less often - Rapidly absorbed Tier 3 formulary placement anticipated by most plans Utilization management criteria consistent with other brands Intermezzo brand parity pricing not viewed as a major barrier with managed markets PHARNALEUTILALS. MC Intermezzo: intellectual property PNARMAC,UTICALS. Me Two U.S. patents issued, additional patent applications pending Two issued U.S. patents - 7,682,628 and 7,658,945 - Buffered formulations - Compositions and methods of treating insomnia Claims require absorption of zolpidem across the oral mucosa Patents expire no sooner than February 2025 Patent applications pending Claims are not limited to use of buffers Compositions and methods of treating middle of the night awakenings

Any patents issuing from these applications would expire no sooner than February 2025 PHARmACEuTICALS..0 TO-2061 (low dose ondansetron) Proposed indication: adjunctive therapy in adult patients with obsessive compulsive disorder (OCD) not adequately responsive to currently approved OCD medication P NARNIALUTILALS. LNC Significant unmet medical need: OCD patients not responding adequately to approved medication Obsessive Compulsive Disorder Intrusive thoughts and repetitive actions to reduce distress Affects 1% to 2% of U.S. adult population, 40% to 50% seek treatment Significantly impacts everyday life activities of patients and their families 40% to 60% of OCD patients do not respond adequately to approved medications, which include the SSRIs Prozac, Luvox, Zoloft No FDA approved medication for treatment resistant OCD Atypical antipsychotics are often used off-label to augment approved medications 68% of treatment resistant OCD patients do not respond Frequently reported adverse events: weight gain, metabolic disorder P HARNIACEUtICALS. Nf Pilot Study B: Improvement measured as % decrease below baseline Pilot Study B, n=21 _

_o E 0 Di 20% _ 20% +I 30% 30% 40% 40% I. All patents 50% 50% Week Week Week Week Week Week Week Week Week Week Week Week 2 4 6 8 10 12 2 4 6 8 10 12 All Patients: n=21 26.3% improvement at 12 weeks Responders: n=12 of 21 (57%) 44.3% improvement at 12 weeks 19 PHARMAL{AALS..0 TO-2069: development overview 505b2 NDA pathway Phase 2 double blind, placebo controlled study, nz.-150, complete enrollment est. Fall 2012, top line data est. Q1 2013 Intellectual property Method of use patent application filed, priority date May 19, 2009 Ondansetron, up to 1.5 mg/day Pending claims for treating SSRI resistant OCD with ondansetron augmentation Managed care survey (-108M lives): unmet medical need acknowledged, Tier 3 formulary placement expected Strategic fit: psychiatry 87% of patient visits for OCD were to psychiatrists in 2009' Complementary to Intermezzo psychiatry co-promote option with Purdue `SDI Physlcian Drug and lagnosis Audd 20 PHARNALEUTILALS. MC Financial overview PNARMAC,UTILALS. MC

Financial position Q4 2011 release and teleconrerence on J/ 1 4/ 1 at i:ju 9/30/11 Cash & investments: Q3 2011 cash burn rate*: 2/1/12 update Milestone payment recvd (12/21/11): Shares outstanding: Options / warrants / other: Total: Employees: $54.1 M $ 1.9 M / month $10.0 M 13.9 M 3.6 17.5 M 18 *During Q3 2011, paid severance of approximately $1.0 million to former employees whose positions were eliminated in the July 15, 2011 reduction in force. Excluding this severance payout, cash use during the quarter averaged approximately $1.5 million per month. 22...CEur CALS. INC Transcopt PHARMACEUTICALS, INC. Intermezzo''' is a registered trademark of Pharmaceuticals, Inc. Ambien and Arrithen Clzif' are registered trademarks of sanofi-aventis Lunestaf is a registered trademark of Sunovran Pharmaceuticals Inc. Zofran,, and NMI,' are registered trademarks of The GlaxoSnythKline Group of Companies Prozac is a registered trademark of Eli Lilly & Co_ Luvoxf' is a registered trademark of Solvay Pharmaceuticals, Inc. Zoloftf' is a registered trademark of Pfizer Inc.

Th Ls web site and associated pages are not associated with, endorsed by, or sponsored by Pharmaceuticals Inc and has no official or unofficial affiliation wtth Pharmaceuticals Inc based on public records. Inadvertent errors are possible. Faqs.org does not guarantee the accuracy or of any information on this site. Use at your own risk. Some parts.2012advarneg. Inc