Transcriptional repression of Xi

Similar documents
Today. Genomic Imprinting & X-Inactivation

Xist function: bridging chromatin and stem cells

Lecture 27. Epigenetic regulation of gene expression during development

Genetics and Genomics in Medicine Chapter 6 Questions

DNA methylation & demethylation

BIOL2005 WORKSHEET 2008

Jayanti Tokas 1, Puneet Tokas 2, Shailini Jain 3 and Hariom Yadav 3

Loss of DNMT1o Disrupts Imprinted X Chromosome Inactivation and Accentuates Placental Defects in Females

Imprinting. Joyce Ohm Cancer Genetics and Genomics CGP-L2-319 x8821

Epigenetics DNA methylation. Biosciences 741: Genomics Fall, 2013 Week 13. DNA Methylation

GENDER James Bier

Allelic reprogramming of the histone modification H3K4me3 in early mammalian development

Mammalian X-Chromosome Inactivation: An Epigenetics Paradigm

Joanna Hillman Michael Higgins Lab Oncology for Scientists I 10/29/2015

Histones modifications and variants

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

Stem Cell Epigenetics

REVIEWS. X chromosome regulation: diverse patterns in development, tissues and disease

OVERVIEW OF EPIGENETICS

Epigenetics: A historical overview Dr. Robin Holliday

Lecture 8. Eukaryotic gene regulation: post translational modifications of histones

Repressive Transcription

Genetics and Genomics in Medicine Chapter 6. Questions & Answers

Review Article Epigenetic Mechanisms of Genomic Imprinting: Common Themes in the Regulation of Imprinted Regions in Mammals, Plants, and Insects

Not IN Our Genes - A Different Kind of Inheritance.! Christopher Phiel, Ph.D. University of Colorado Denver Mini-STEM School February 4, 2014

Epigenetic Regulation of Health and Disease Nutritional and environmental effects on epigenetic regulation

Overview: Conducting the Genetic Orchestra Prokaryotes and eukaryotes alter gene expression in response to their changing environment

Epigenetics. Lyle Armstrong. UJ Taylor & Francis Group. f'ci Garland Science NEW YORK AND LONDON

Long Noncoding RNAs in Imprinting and X Chromosome Inactivation

p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs

Supporting Information

Recent advances in X-chromosome inactivation Edith Heard

Epigenetics and Chromatin

Chromosome-Wide Analysis of Parental Allele-Specific Chromatin and DNA Methylation

Eukaryotic Gene Regulation

Biology 2C03 Term Test #3

An epigenetic approach to understanding (and predicting?) environmental effects on gene expression

Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing

Gene Regulation. Bacteria. Chapter 18: Regulation of Gene Expression

STEM CELL GENETICS AND GENOMICS

R. Piazza (MD, PhD), Dept. of Medicine and Surgery, University of Milano-Bicocca EPIGENETICS

Fragile X Syndrome. Genetics, Epigenetics & the Role of Unprogrammed Events in the expression of a Phenotype

Lineage-specific regulation of imprinted X inactivation in extraembryonic endoderm stem cells

Terms. Primary vs. secondary sexual differentiation. Development of gonads vs. physical appearances

The genetics of heterochromatin. in metazoa. mutations by means of X-ray irradiation" "for the discovery of the production of

Gene Expression DNA RNA. Protein. Metabolites, stress, environment

Molecular Biology (BIOL 4320) Exam #2 May 3, 2004

X-Inactivation Choice in Mice

HGD 5502 EPIGENETICS. Dr. Abhi Veerakumarasivam (2011)

Bisphenol A Exposure Disrupts Genomic Imprinting in the Mouse

I) Development: tissue differentiation and timing II) Whole Chromosome Regulation

DNA Methylation and Cancer

Epigenetic regulation of endogenous genes and developmental processes

Sex chromosomes and sex determination

Epigenetics Armstrong_Prelims.indd 1 04/11/2013 3:28 pm

Human Genetics (Learning Objectives)

Long nonoding RNAs in the X-inactivation center

Mediators and dynamics of DNA methylation

Although DNA methylation has been considered the primary

Epigenetic Inheritance

Molecular Determination of Gender in Drosophila

Session 2: Biomarkers of epigenetic changes and their applicability to genetic toxicology

SUPPLEMENTARY INFORMATION

The lncrna Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation

An Unexpected Function of the Prader-Willi Syndrome Imprinting Center in Maternal Imprinting in Mice

AN INTRODUCTION TO EPIGENETICS DR CHLOE WONG

Antagonism between DNA and H3K27 Methylation at the Imprinted Rasgrf1 Locus

Nature Genetics: doi: /ng Supplementary Figure 1. Assessment of sample purity and quality.

Early Embryonic Development

A balancing act: heterochromatin protein 1a and the Polycomb group coordinate their levels to silence chromatin in Drosophila

Unusual maintenance of X chromosome inactivation predisposes female lymphocytes for increased expression from the inactive X

Recent Advances in X-Chromosome Inactivation

Molecular Cell Biology. Prof. D. Karunagaran. Department of Biotechnology. Indian Institute of Technology Madras

EPIGENETICS AND HUMAN DISEASE

Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation

Gene Regulation - 4. One view of the Lactose Operon

Alpha thalassemia mental retardation X-linked. Acquired alpha-thalassemia myelodysplastic syndrome

MUTATIONS, MUTAGENESIS, AND CARCINOGENESIS

Regulation of Gene Expression in Eukaryotes

Dissecting gene regulation network in human early embryos. at single-cell and single-base resolution

DNA and Histone Methylation in Learning and Memory

Lecture 5 Chapter 4: Sex Determination and Sex-Linked Characteristics

FOLLICULAR LYMPHOMA- ILLUMINA METHYLATION. Jude Fitzgibbon

Ch. 18 Regulation of Gene Expression

PAGE PROOF. Epigenetic Regulation of the X Chromosomes in C. elegans. Susan Strome 1 and William G. Kelly 2

Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance

Nuclear reprogramming of sperm and somatic nuclei in eggs and oocytes

CHAIRE ÉPIGÉNÉTIQUE ET MÉMOIRE CELLULAIRE. Année : Reprogrammations développementales, induites et pathologiques

DNA, Genes, and Chromosomes. The instructions for life!!!

Regulation of Gene Expression

Erosion of X Chromosome Inactivation in Human Pluripotent Cells Initiates with XACT Coating and Depends on a Specific Heterochromatin Landscape

Sexual Reproduction. For most diploid eukaryotes, sexual reproduction is the only mechanism resulting in new members of a species.

Epigenetics: The Future of Psychology & Neuroscience. Richard E. Brown Psychology Department Dalhousie University Halifax, NS, B3H 4J1

Epigenetics: Basic Principals and role in health and disease

Regulation of Gene Expression

Epigenetic Mechanisms

Eukaryotic transcription (III)

THE CHROMOSOMAL BASIS OF INHERITANCE CHAPTER 15

The controversial role of the Polycomb group proteins in transcription and cancer: how much do we not understand Polycomb proteins?

Transcription:

Transcriptional repression of Xi Xist Transcription of Xist Xist RNA Spreading of Xist Recruitment of repression factors. Stable repression Translocated Xic cannot efficiently silence autosome regions. A XX ES cell line with T(X;4)37H translocation 12

The spread of mh3k27 into chromosome 4 region is inefficient. H3K27me3 is largely confined to the X chromosome. TMA: differentiated ES cells T37H: adult fibroblasts Histone acetylation (ach4) mark is maintained on chromosome 4. 13

Xist RNA is largely limited to X chromosome. Mapping of the translocation breakpoint X-chromosome is enriched for LINE (long interspersed element) Translocation breakpoint The block to Xist spreading coincides with a region high in gene content but low in LINE. 14

Cytosoine methylation contributes to the maintenance of X inactivation. CCGCGG CCGG c/c: Dnmt1 -/- Emb: embryo YS: yolk sac Exon 1 of Xist Xa Xi Xa Y Xist Gene subject to X-inactivation Cytosine methylation In the absence of cytosine methylation, X inactivation in the embryo is initiated, but not stably maintained. WT E8.5 lacz Dnmt c/c E8.5 X-inactivation is initiated normally in embryo. lacz Dnmt c/c E9.5 X-inactivation is not maintained. lacz lacz LacZ is on the paternal allele. 15

Imprinted X inactivation in extraembryonic tissue does not require cytosine methylation. Imprinted X-inactivation in extraembryonic tissue Msg1 promoter lacz Maternal Paternal ve: visceral endoderm, part of extraembryonic tissue SmcHD1 is critical for X-inactivation. Structural maintenance of chromosome hinge domain Identified as a modifier of transgene silencing Homozygous mutation of SmcHD1 leads to lethality in females. MommeD1: ENU-induced mouse mutant SmcHD1 gene trap (gt): inactivation of SmcHD1 by marker integration 16

X-inactivation is impaired in SmcHD1 -/- mutant. E7.5 Embryo Placenta SmcHD1 + Xist + GFP + Xist - SmcHD1 - Xist + GFP + Xist - P M P M E10.5 Xist activation and H3K27me3 localization appear normal in SmcHD1 Homozygous mutant. 17

SmcHD1 localizes to the inactive X chromosome. Reactivation of genes on Xi is accompanied by DNA demethylation. 18

H3K27me3 is dispensable for random X inactivation, but is required for the maintenance of imprinted X inactivation. Xist Tsix GFP Tsix mutation leads to strong expression of Xist and preferential X-inactivation of GFP marked chromosome. Eed is part of the complex that catalyzes H3K27me3. H3K27me3 is undetectable in Eed -/- embryos. At E5.5, extraembryonic tissues have undergone imprinted X-inactivation (paternal X with GFP), while both X chromosomes remain active in embryo. The imprinted X-inactivation is erased in the embryonic epiblast cells at this stage. Imprinted X-inactivation is initiated normally in the absence of Eed, but X-inactivation is not stably maintained in some trophoblast cells (TB). Random X inactivation is normally initiated and maintained in the embryo in the absence of Eed; but imprinted X-inactivation is not maintained. 19

Monoallelic expression of X-linked genes in Eed embryos. Some genes (15%) escape X-inactivation in human. Pseudo autosome genes Significant expression from Xi Silenced on Xi Expression measured from 9 lines of human/rodent hybrid cells containing Xi. Each line represents data from one hybrid cell line. 20

References X-linked hypoxanthine-guanine phosphoribosyl transferase deficiency: heterozygote has two clonal populations. Science 160, 425 (1968). A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature 349, 38 (1991). Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome. Nature 351, 329 (1991). The product of the mouse Xist gene is a 15kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 71, 515 (1992). Requirement for Xist in X chromosome inactivation. Nature 379, 131 (1996). Xist RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure. The Journal of Cell Biology 132, 259 (1996). Tsix, a gene antisense to Xist at the X-inactivation centre. Nature Genetics 21, 400 (1999). Targeted mutagenesis of Tsix leads to nonrandom X inactivation. Cell 99, 47 (1999). X inactivation in the mouse embryo deficient for Dnmt1: distinct effect of hypomethylation on imprinted and random X inactivation. Developmental Biology 225, 294 (2000). Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation. Cell 107, 727 (2001). Role of histone H3 lysine 27 methylation in X inactivation. Science 300, 131 (2003). X-inactivation profile reveals extensive variability in X-linked gene expression in females. Nature 434, 400 (2005). The Polycomb group protein EED is dispensable for the initiation of random X- chromosome inactivation. PloS genetics 2, e66 (2006). Attenuated spread of X-inactivation in an X;autosome translocation. PNAS 103, 7706 (2006). X chromosome reactivation initiates in nascent primordial germ cells in mice. PloS genetics 3, e116 (2007).

SmcHD1, containing a structural-maintenance-of-chromosomes hinge domain, has a critical role in X inactivation. Nature Genetics 40, 663 (2008). RNF12 is an X-encoded dose-dependent activator of X chromosome inactivation. Cell 139, 999 (2009). Maternal Rnf12/RLIM is required for imprinted X-chromosome inactivation in mice. Nature 467, 977 (2010). RNF-12 activates Xist and is essential for X chromosome inactivation. PloS genetics 7, e1002001 (2011). Regulation of X-chromosome inactivation by the X-inactivation centre. Nature Reviews Genetics 12, 429 (2011). Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation. Nature Reviews Genetics 12, 542 (2011).