Andreas Beyerlein, PhD; Ewan Donnachie, MSc; Anette-Gabriele Ziegler, MD

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Infections in early life and development of celiac disease Brief Original Contribution Andreas Beyerlein, PhD; Ewan Donnachie, MSc; Anette-Gabriele Ziegler, MD Corresponding author: Dr. Andreas Beyerlein, PhD Institute of Diabetes Research Helmholtz Zentrum München Ingolstädter Landstraße 1 85764 Neuherberg, Germany Phone +49(0)89 3068-5578 Fax +49(0)89 3187-3144 E-mail: andreas.beyerlein@helmholtz-muenchen.de Abbreviations: CD, celiac disease CI, confidence interval HR, hazard ratio ICD-10, 10th revision of the International Statistical Classification of Diseases and Related Health Problems Running head: Infections and celiac disease 1

Word count abstract: 157 Word count main text: 1174 2

Abstract Early infections have been suggested to be associated with increased risk for later celiac disease (CD). We analysed prospective claims data of n=295,420 infants from Bavaria, Germany, born between 2005 and 2007 containing information on medically attended infectious diseases according to ICD-10 code on a quarterly basis to calculate hazard ratios and 95% confidence intervals of time to CD diagnosis by infection exposure, adjusting for sex, calendar month of birth and number of previous healthcare visits. CD risk was increased in children who had a gastrointestinal infection during the first year of life (hazard ratio 1.32, 95% confidence interval 1.12, 1.55) and to a lesser extent also in children with a respiratory infection during the first year (hazard ratio 1.22, 95% confidence interval 1.04, 1.43). Repeated gastrointestinal infections during the first year of life were associated with particularly increased CD risk in later life. These findings indicate that early gastrointestinal infections may be relevant for CD development. Key words: Gastrointestinal infections, Respiratory infections, Celiac disease 3

Recent studies showed that infections in the first year of life are associated with increased risk for later celiac disease (CD), but were not consistent in whether respiratory or gastrointestinal infections are more relevant (1, 2). We investigated associations between types of medically attended infectious diseases and CD in a large population-based cohort. The main focus of our analyses lay on infections during the first year of life, but we additionally explored associations of CD and infections up to age 2 years. METHODS We used claims data provided by the Kassenärztliche Vereinigung Bayern of all n=295,420 statutorily insured infants born alive between 2005 and 2007 in Bavaria, Germany (92.6 % of all live-born children during this period in Bavaria), and followed up from birth to a median age of 8.5 years. These data covered diagnoses from both primary care and specialized physicians (e. g. general practitioners, paediatricians, gastroenterologists and doctors of internal medicine). Diagnoses of medically attended infectious diseases and CD were obtained using ICD-10 codes recorded in quarterly calendar intervals (3). Development of CD was defined by first occurrence of the ICD-10 code K90.0. The selection and classification of relevant infection diagnoses was done as previously described for the The Environmental Determinants of Diabetes in the Young (TEDDY) study (4). We distinguished infections by symptoms (mainly respiratory, gastrointestinal) and causes (mainly viral, bacterial) according to their ICD-10 code (see web table 1 for details). Infections with unknown causes were classified according to their symptoms only. Cox proportional hazards models were used to calculate hazard ratios and 95% confidence intervals of time to CD diagnosis by infection exposure, adjusting for sex, calendar month of birth and the number of previous healthcare visits (as a proxy for comorbidities). Infections were 4

treated as separate individual binary covariates with non-exposure to a specific infection as reference category a) during the whole first year of life and b) in quarterly intervals during the first two years of life, i. e. we calculated a separate Cox model for each infection type (including any infections, i.e. irrespective of symptoms or causes) and exposure interval. In sensitivity analyses, we a) adjusted all Cox models for the number of previous quarterly intervals with infections of the same type, b) excluded children with CD diagnoses recorded in only one quarterly interval in order to reduce the number of potential false-positive cases, and c) excluded infections occurring within 12 months prior to CD diagnosis to exclude potential bias by symptoms of undiagnosed CD. Cumulative risks of CD after age 12 months were compared by number of quarterly intervals with respiratory or gastrointestinal infections during the first year of life using Kaplan-Meier analysis and log-rank tests. To avoid reverse causation bias, time at risk for CD was measured after the respective infection exposure period in each analysis. Interaction terms of the respective predictor variables with time were calculated to check the proportional hazards assumption. Statistical analyses were conducted using SAS 9.4 and R 3.1.1. Statistical significance was determined at the 5% level (2- sided). Data release was approved by the data protection officer in accordance with the German Guidelines for Secondary Data Analysis (5). RESULTS In total, 853 children (0.29 %; 415 (48.7%) males) were diagnosed with CD at a median age of 5.0 years, of which 820 (95.5%) developed CD after the first year of life (see web table 2 for detailed characteristics of study subjects by infection exposure). In 488 cases (57.2%), CD diagnosis was recorded in more than one quarterly interval. CD risk was increased in children 5

who had a medically attended gastrointestinal infection during the first year of life (hazard ratio 1.32, 95% confidence interval 1.12, 1.55), accounting for an incidence rate of 46/100,000 person years compared to a rate of 34/100,000 person years in children without a gastrointestinal infection. The association was slightly weaker in children with a medically attended respiratory infection during the first year (hazard ratio 1.22, 95% confidence interval 1.04, 1.43), with incidence rates of 38/100,000 and 32/100,000 person years in children with and without respiratory infections, respectively. The proportional hazards assumption was not rejected for any of the two models. These associations were relatively constant across all quarterly age intervals during the first two years of life and also thereafter, but could not be attributed to either viral or bacterial infections only (figure 1), and were very similar when we adjusted the models for previous infections of the same type (web figure 1), or restricted the analysis to CD diagnoses recorded in more than one quarterly interval (web figure 2), or to infections occurring more than 12 months prior to CD diagnosis (data not shown). Repeated respiratory and particularly gastrointestinal infections during the first year of life were associated with increased cumulative risk of CD in later life (figure 2). DISCUSSION Medically attended gastrointestinal and also respiratory infections were associated with CD development by age 8 in a large, population-based sample. Particularly strong associations were observed for repeated gastrointestinal infections in the first year of life. Early gastrointestinal infections may therefore be relevant for CD development rather than for type 1 diabetes development, for which early respiratory infections have been found to be more relevant in the same data (3). 6

Our data are consistent with a similar prospective study that interrogated infection records, which showed strong associations of CD with gastrointestinal infections during the first 12 months of life (2), and partly also with another one in which a positive association with respiratory infections was observed (1). It should be mentioned, however, that in these studies infections were defined based on parental reports (1) or hospitalization records (2), respectively, indicating different levels of infection severity compared with our data. Further, our CD diagnoses could not be validated with data from other sources, such as questionnaires (1) or pathology reports (2), but we assume their validity as relatively high, as the diagnoses were coded by physicians for the purpose of remuneration, for example to support fees claimed for diagnostic testing. Neither study has data on onset of CD-associated autoantibodies, so that it remains unclear from these findings whether early infections may be a trigger for the disease, or rather contribute to susceptibility. A number of mechanisms have been suggested for early infections to potentially cause CD, including alterations of the microbiome or induction of specific immune responses such as type I interferons (6). Our data do not allow to investigate these potential pathways further, but given that we observed the strongest associations for repeated gastrointestinal infections, but no major role for either viral or bacterial infections, our results may suggest that it is rather a persistent state of inflammation in the gastrointestinal tract in early life than a specific infectious agent which leads to increased CD risk. Unfortunately, our data do not contain information about whether CD diagnosis was based on clinical, serological and/or histopathologic findings, or about socioeconomic status, infant feeding or antibiotic use which might be potential confounders in this context. Further, we investigated several infection types with different exposure ages, potentially introducing multiple testing errors. 7

8

ACKNOWLEDGMENTS Author affiliations: Institute of Diabetes Research, Helmholtz Zentrum München, Munich, Germany (Andreas Beyerlein, Anette-Gabriele Ziegler) Kassenärztliche Vereinigung Bayern (Bavarian Association of Statutory Health Insurance Physicians), Munich, Germany (Ewan Donnachie) Financial support: The work was supported by grants from JDRF (JDRF-No 2-SRA-2015-13-Q- R), funding from the German Federal Ministry of Education and Research (BMBF) to the German Center for Diabetes Research (DZD e.v.), by The Leona M. & Harry B. Helmsley Charitable Trust (2015PG-T1D072), and by imed the Helmholtz Initiative on Personalized Medicine. The funders had no role in the design and conduct of the study; collection, management, analysis, and interpretation of the data; preparation, review, or approval of the manuscript; and decision to submit the manuscript for publication. Contributions: AB performed the analyses and wrote the first draft of the manuscript together with AGZ. ED contributed to conception and design of this study and to the final version of the manuscript. All authors approved the final version of the manuscript. Conflicts of interest: None. 9

REFERENCES 1. Marild K, Kahrs CR, Tapia G, et al. Infections and risk of celiac disease in childhood: a prospective nationwide cohort study. Am J Gastroenterol 2015;110(10):1475-1484. 2. Canova C, Zabeo V, Pitter G, et al. Association of maternal education, early infections, and antibiotic use with celiac disease: a population-based birth cohort study in northeastern Italy. American journal of epidemiology 2014;180(1):76-85. 3. Beyerlein A, Donnachie E, Jergens S, et al. Infections in early life and development of type 1 diabetes. JAMA : the journal of the American Medical Association 2016;315(17):1899-1901. 4. Lönnrot M, Lynch K, Larsson HE, et al. A method for reporting and classifying acute infectious diseases in a prospective study of young children: TEDDY. BMC pediatrics 2015;15:24. 5. Swart E, Gothe H, Geyer S, et al. [Good Practice of Secondary Data Analysis (GPS): guidelines and recommendations]. Gesundheitswesen 2015;77(2):120-126. 6. Sollid LM, Jabri B. Triggers and drivers of autoimmunity: lessons from coeliac disease. Nat Rev Immunol 2013;13(4):294-302. 10

Figure 1. Hazard ratios (dots) and 95% confidence intervals (bars) for celiac disease development by types of medically attended infectious diseases, adjusted for sex, month of birth and number of previous healthcare visits, based on data of n=295,420 infants from Bavaria, Germany, born between 2005 and 2007. Time at risk for celiac disease was measured after the respective infection exposure period for each model. 11

Figure 2. Cumulative risk of celiac disease development after age 12 months by number of quarterly intervals with a medically attended respiratory infection (panel A, log-rank p=0.006) or gastrointestinal infection (panel B, log-rank p<0.001) during the first year of life, based on data of n=295,420 infants from Bavaria, Germany, born between 2005 and 2007. 12

Web Figure 1. Hazard ratios (dots) and 95% confidence intervals (bars) for celiac disease development by types of medically attended infectious diseases, adjusted for sex, month of birth, number of previous healthcare visits, and number of previous quarterly intervals with infections of the same type, based on data of n=295,420 infants from Bavaria, Germany, born between 2005 and 2007. Time at risk for celiac disease was measured after the respective infection exposure period for each model. 13

Web Figure 2. Hazard ratios (dots) and 95% confidence intervals (bars) for celiac disease development as recorded in at least two quarterly intervals by types of medically attended infectious diseases, adjusted for sex, month of birth and number of previous healthcare visits, based on data of n=295,420 infants from Bavaria, Germany, born between 2005 and 2007. Time at risk for celiac disease was measured after the respective infection exposure period for each model. 14

Web Table 1. Infections were categorized by symptoms (respiratory, gastrointestinal, dermal, eye, and other) and causes (viral, bacterial, mycoses, parasites, or unknown) based on their ICD- 10 code as tabulated below. For each child, the presence of infections (binary variable) from a specific category but not their frequency was reported in quarterly intervals. For example, if a child was diagnosed with a gastrointestinal infection in January, March and November of the same year, respectively, it would have a gastrointestinal infection record in the first and fourth quarter, but not in the second and third quarter of this particular year. ICD-10 code Categorization by symptoms Categorization by causes A00 gastrointestinal bacterial A01 gastrointestinal bacterial A02 gastrointestinal bacterial A03 gastrointestinal bacterial A04 gastrointestinal bacterial A05 gastrointestinal bacterial A06 gastrointestinal parasites A07 gastrointestinal parasites A08.0 gastrointestinal viral A08.1 gastrointestinal viral A08.2 gastrointestinal viral A08.3 gastrointestinal viral A08.4 gastrointestinal viral A08.5 gastrointestinal unknown A09 gastrointestinal unknown A16 other bacterial A21 other bacterial A28 other bacterial A37 other bacterial A38 respiratory bacterial A40 other bacterial A41 other bacterial A42 other bacterial A49 other bacterial A52 other bacterial A54 other bacterial A66 other bacterial A68 other bacterial A69 other bacterial A87 other viral 15

A90 other viral A93 other viral A94 other viral A98 other viral B00 other viral B01 other viral B02 other viral B05 other viral B06 other viral B07 other viral B08 other viral B09 other viral B19 other viral B26 other viral B27 other viral B30 other viral B33 other viral B34 other viral B35 other mycoses B36 other mycoses B37 other mycoses B43 other mycoses B48 other mycoses B49 other mycoses B50 other parasites B65 other parasites B68 other parasites B80 other parasites B82 other parasites B85 other parasites B86 other parasites B89 other parasites B95 other bacterial B97 other viral B99 other unknown G00 other bacterial H00 eye unknown H01 eye unknown H04 eye unknown H10.0 eye unknown H10.2 eye unknown H10.3 eye unknown H10.4 eye unknown H10.5 eye unknown H10.8 eye unknown 16

H10.9 eye unknown H60.0 other unknown H60.3 other unknown H60.9 other unknown H65 respiratory unknown H66 respiratory unknown H70.0 respiratory unknown H70.9 respiratory unknown H73.0 respiratory unknown H92 respiratory unknown I30.1 other unknown I88.0 other unknown I88.9 other unknown I89.1 other unknown J00 respiratory viral J01 respiratory unknown J02.0 respiratory bacterial J02.8 respiratory viral J02.9 respiratory viral J03.0 respiratory bacterial J03.8 respiratory viral J03.9 respiratory viral J04 respiratory viral J05 respiratory viral J06 respiratory viral J09 respiratory viral J10 respiratory viral J11 respiratory viral J12 respiratory viral J13 respiratory bacterial J14 respiratory bacterial J15 respiratory bacterial J18 respiratory unknown J20.0 respiratory bacterial J20.1 respiratory bacterial J20.2 respiratory bacterial J20.3 respiratory viral J20.4 respiratory viral J20.5 respiratory viral J20.6 respiratory viral J20.7 respiratory viral J20.8 respiratory unknown J20.9 respiratory unknown J21 respiratory unknown J22 respiratory unknown 17

J32.0 respiratory unknown J32.2 respiratory unknown J32.8 respiratory unknown J32.9 respiratory unknown J35.9 respiratory unknown J38.5 respiratory unknown J40 respiratory unknown J41 respiratory unknown J42 respiratory unknown J44.8 respiratory unknown J45.1 respiratory unknown J45.8 respiratory unknown J45.9 respiratory unknown J46 respiratory unknown J85.1 other bacterial J98 respiratory unknown K04.6 other unknown K05 other unknown K12 other unknown K13.7 other unknown K14.1 other unknown L00 dermal bacterial L01 dermal bacterial L02.1 dermal bacterial L02.2 dermal bacterial L02.3 dermal bacterial L02.4 dermal bacterial L02.9 dermal bacterial L03 dermal bacterial L04 dermal unknown L08 dermal bacterial M30.3 other unknown M72.6 other bacterial N10 other unknown N11.9 other unknown N30 other unknown N34.1 other unknown N39 other unknown N45.9 other unknown N48.1 other unknown N48.2 other unknown N51.2 other unknown N61 other bacterial N76.2 other unknown N77.1 other unknown 18

P36 other unknown P39.0 other unknown P39.1 eye unknown P39.2 other unknown P39.3 other unknown P39.4 dermal unknown P39.8 other unknown P39.9 other unknown P58.2 other unknown R05 respiratory unknown R06.2 respiratory unknown R06.7 respiratory viral R07.0 respiratory unknown R11 gastrointestinal unknown R21 dermal unknown R50 fever unknown R56.0 other unknown R59 other unknown T88.0 other unknown 19

Web Table 2. Characteristics of study subjects according to records of medically attended infections during the first year of life. All children (n=295,420) Children with 1 respiratory infections (n=203,160) Children with 1 gastrointestinal infections (n=54,581) Total follow-up, years (median) 2,349,386 (8.5) 1,640,579 (8.5) 440,595 (8.5) Celiac disease, n (%) 853 (0.29 %) 626 (0.31 %) 203 (0.37 %) Sex, n (%) Males 162,448 (55.0 %) 115,103 (56.7 %) 31,470 (57.6 %) Females 132,972 (45.0 %) 88,057 (43.3 %) 23,111 (42.3 %) Season of birth, n (%) March to May 73,639 (24.9 %) 51,422 (25.3 %) 13,353 (24.5 %) June to August 77,996 (26.4 %) 55,336 (27.2 %) 15,361 (28.1 %) September to November 73,218 (24.8 %) 49,470 (24.4 %) 13,716 (25.1 %) December to February 70,567 (23.9 %) 46,932 (23.1 %) 12,151 (22.3 %) Number of previous healthcare visits, n (%) 0-3 visits 85,333 (28.9 %) 38,829 (19.1 %) 7,850 (14.4 %) 4-6 visits 146,733 (49.7 %) 109,846 (54.1 %) 27,560 (50.5 %) 7-9 visits 51,980 (17.6 %) 44,086 (21.7 %) 14,634 (26.8 %) 10 visits 11,374 (3.8 %) 10,399 (5.1 %) 4,537 (8.3 %) 20