McAlpine PERK-GSK3 regulates foam cell formation. Supplemental Material. Supplementary Table I. Sequences of real time PCR primers.

Similar documents
SUPPLEMENTAL FIGURE 1

a) Primary cultures derived from the pancreas of an 11-week-old Pdx1-Cre; K-MADM-p53

Supplementary Table 3. 3 UTR primer sequences. Primer sequences used to amplify and clone the 3 UTR of each indicated gene are listed.

Supplementary Materials

c Tuj1(-) apoptotic live 1 DIV 2 DIV 1 DIV 2 DIV Tuj1(+) Tuj1/GFP/DAPI Tuj1 DAPI GFP

Abbreviations: P- paraffin-embedded section; C, cryosection; Bio-SA, biotin-streptavidin-conjugated fluorescein amplification.

Supplementary Figure 1 a

Figure S1. Analysis of genomic and cdna sequences of the targeted regions in WT-KI and

Supplementary Document

CD31 5'-AGA GAC GGT CTT GTC GCA GT-3' 5 ' -TAC TGG GCT TCG AGA GCA GT-3'

Toluidin-Staining of mast cells Ear tissue was fixed with Carnoy (60% ethanol, 30% chloroform, 10% acetic acid) overnight at 4 C, afterwards

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1

Supplementary Figure 1 MicroRNA expression in human synovial fibroblasts from different locations. MicroRNA, which were identified by RNAseq as most

Supplementary Figures

Supplementary Figure 1. ROS induces rapid Sod1 nuclear localization in a dosagedependent manner. WT yeast cells (SZy1051) were treated with 4NQO at

Supplementary Appendix

Supplemental Data. Shin et al. Plant Cell. (2012) /tpc YFP N

Supplementary Figure S I: Effects of D4F on body weight and serum lipids in apoe -/- mice.

Citation for published version (APA): Oosterveer, M. H. (2009). Control of metabolic flux by nutrient sensors Groningen: s.n.

Nature Immunology: doi: /ni.3836

Astaxanthin prevents and reverses diet-induced insulin resistance and. steatohepatitis in mice: A comparison with vitamin E

Table S1. Oligonucleotides used for the in-house RT-PCR assays targeting the M, H7 or N9. Assay (s) Target Name Sequence (5 3 ) Comments

SUPPLEMENTARY INFORMATION

Journal of Cell Science Supplementary information. Arl8b +/- Arl8b -/- Inset B. electron density. genotype

Supplementary Figure 1

Supplementary Table 2. Conserved regulatory elements in the promoters of CD36.

Supplementary Figure 1

Supplementary Figure 1a

Cross-talk between mineralocorticoid and angiotensin II signaling for cardiac

Supplementary Figure 1

Supplemental Information. Cancer-Associated Fibroblasts Neutralize. the Anti-tumor Effect of CSF1 Receptor Blockade

SUPPORTING INFORMATION

SUPPLEMENTARY DATA. Supplementary Table 1. Primer sequences for qrt-pcr

Supplemental Information. Th17 Lymphocytes Induce Neuronal. Cell Death in a Human ipsc-based. Model of Parkinson's Disease

A smart acid nanosystem for ultrasensitive. live cell mrna imaging by the target-triggered intracellular self-assembly

Supplementary Figure 1

Supplemental Figures: Supplemental Figure 1

Plasmids Western blot analysis and immunostaining Flow Cytometry Cell surface biotinylation RNA isolation and cdna synthesis

PATIENTS AND METHODS. Subjects

Culture Density (OD600) 0.1. Culture Density (OD600) Culture Density (OD600) Culture Density (OD600) Culture Density (OD600)

Supplementary Information

Loyer, et al. microrna-21 contributes to NASH Suppl 1/15

SUPPLEMENTARY RESULTS

BHP 2-7 and Nthy-ori 3-1 cells were grown in RPMI1640 medium (Hyclone) supplemented with 10% fetal bovine serum (Gibco), 2mM L-glutamine, and 100 U/mL

Supplementary Materials and Methods

Supplementary Information. Bamboo shoot fiber prevents obesity in mice by. modulating the gut microbiota

Supplementary information

SUPPLEMENTARY INFORMATION

SUPPLEMENTAL METHODS Cell culture RNA extraction and analysis Immunohistochemical analysis and laser capture microdissection (LCM)

Formylpeptide receptor2 contributes to colon epithelial homeostasis, inflammation, and tumorigenesis

TetR repressor-based bioreporters for the detection of doxycycline using Escherichia

Relationship of the APOA5/A4/C3/A1 gene cluster and APOB gene polymorphisms with dyslipidemia

A basic helix loop helix transcription factor controls cell growth

Malignant Amelanotic Melanoma of the Pleura without Primary Skin Lesion: An Autopsy Case Report. a a*

Supplementary Data. Clinical Setup. References. Program for Embryo Donation

Phylogenetic analysis of human and chicken importins. Only five of six importins were studied because

BIOLOGY 621 Identification of the Snorks

Supplemental Methods Supplemental Table 1. Supplemental Figure 1. Supplemental Figure 2. Supplemental Figure 3. Supplemental Figure 4.

Lezione 10. Sommario. Bioinformatica. Lezione 10: Sintesi proteica Synthesis of proteins Central dogma: DNA makes RNA makes proteins Genetic code

*To whom correspondence should be addressed. This PDF file includes:

Supplemental Material:

RESEARCH COMMUNICATION. Genotype Frequencies of Cyclooxygenease 2 (COX2) Rare Polymorphisms for Japanese with and without Colorectal Cancer

Baseline clinical characteristics for the 81 CMML patients Routine diagnostic testing and statistical analyses... 3

Single-Molecule Analysis of Gene Expression Using Two-Color RNA- Labeling in Live Yeast

Description of Supplementary Files. File Name: Supplementary Information Description: Supplementary Figures and Supplementary Tables

Mutation Screening and Association Studies of the Human UCP 3 Gene in Normoglycemic and NIDDM Morbidly Obese Patients

ice-cold 70% ethanol with gentle vortexing, incubated at -20 C for 4 hours, and washed with PBS.

Figure S1. IRF5 mrna expression is not expressed modulated by steatosis grade in

Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis SUPPLEMENTARY INFORMATION

Viral hepatitis, which affects half a billion people

Beta Thalassemia Case Study Introduction to Bioinformatics

Heterogeneous point mutations of the p53 gene in pulmonary fibrosis

CIRCRESAHA/2004/098145/R1 - ONLINE 1. Validation by Semi-quantitative Real-Time Reverse Transcription PCR

Supporting Information. Mutational analysis of a phenazine biosynthetic gene cluster in

Supporting Information

mir-1202: A Primate Specific and Brain Enriched mirna Involved in Major Depression and Antidepressant Treatment. Supplementary Information

SUPPLEMENTARY INFORMATION

Beta Thalassemia Sami Khuri Department of Computer Science San José State University Spring 2015

Nomenclature What is in a name? My name Joseˊ Jimenez = Bill Dana John L.C. Savony = Frank Fontaine

Qiaohua Kang and Anping Chen. Introduction

PKR-Like Endoplasmic Reticulum Kinase and Glycogen Synthase Kinase-3α/β. Regulate Foam Cell Formation

Nucleotide Sequence of the Australian Bluetongue Virus Serotype 1 RNA Segment 10

Supplementary Materials for

Supplementary Figure 1: GPCR profiling and G q signaling in murine brown adipocytes (BA). a, Number of GPCRs with 2-fold lower expression in mature

What do you think of when you here the word genome?

INTERLEUKIN-10 FACILITATES BOTH CHOLESTEROL UPTAKE AND EFFLUX IN MACROPHAGES

3) Table_S1: Clinical Characteristics of Breast Cancer Patients. 5) Table_S3: Primer sequences used for qt-pcr of ChIP samples

Mutation analysis of a Chinese family with oculocutaneous albinism

Supplementary information

Nucleotide diversity of the TNF gene region in an African village

Interferon Induction of Pulmonary Emphysema in the Adult Murine Lung

Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany


Isolate Sexual Idiomorph Species

Development of RT-qPCR-based molecular diagnostic assays for therapeutic target selection of breast cancer patients

On the relevance of carnosine and carnosinase for the development of diabetic nephropathy Riedl, Eva Maria Susanne

Supplemental Methods Human AV samples This study complied with the Declaration of Helsinki, and was approved by the Review Board of Tongji Hospital

without LOI phenotype by breeding female wild-type C57BL/6J and male H19 +/.

Rapid Diagnosis of Extensively Drug-Resistant Tuberculosis by Use of a Reverse Line Blot Hybridization Assay

Integration Solutions

Transcription:

Mclpine PERK-GSK3 regulates foam cell formation Supplemental Material Supplementary Table I. Sequences of real time PCR primers. Primer Name Primer Sequences (5-3 ) Product Size (bp) GRP78 (human) Fwd: CG GG GG GG C G GG 86 Rev: CC CTT G CGG C G CT GRP78 (mouse) Fwd: CC TGG GTG GGG C CT TT 1 Rev: TCT TC T TTG GCC CG GT GRP9 Fwd: TGG G GG GTT CC G TG 19 Rev: GTT GCC G CC TCC GT CT Calreticulin Fwd: TG G GG CCC CGT TCT TCC T 115 Rev: G CC CG GCC TG GT TTC TC T PDI Fwd: G CTC GC GC CC 159 Rev: CC TT TT CC GGC CC CT TF Fwd: CTC CGG GC G TTG GT GTT 153 Rev: GGC TGC TT GTC TCC TGG C CHOP (human) Fwd: TGC CTT TCT CTT CGG C CT Rev: TGT GC CTC TGC TGG TTC TG CHOP (mouse) Fwd: GTC CCT GC TTG GCT GC G 1 Rev: TGG G GCG GG GCT TTG FS Fwd: G GC CTG TCT GG TTT GT GC 15 Rev: TGG CTT CT GG TG CTT CC SREP Fwd: C GT GC C GTC TGG CG Rev: GCT TC GC CC TGT TCT CCT G SREP1c Fwd: CG CT CG G CT GCT TC 138 Rev: GG GG CTT C GG GG GC HMGCo Fwd: CTG TC TTC CG CC GG TTG 167 Rev: GTC CC GG C TGT G TGG GLUD Fwd: CCG TT CG CC TG TGT GG 169 Rev: TGG TG CC TCC TTG TG TCT Citrate Synthase Fwd: TGC TTC CTC CC G TTT G 131 Rev: CC CC TC TC TG TCC C G βctin (human) Fwd: CC GG CGC GGC TC G 5 Rev: CTT T GTG CG CC GT TTC C βctin (mouse) Fwd: GGC CC C CCT TCT C TG Rev: GGG GTG TTG G GTC TC C 9 S1

GSK3α/β activity (percent of control) OD (57nm).7.6 y =.31x -. R² =.9865.5..3..1...5 1. 1.5..5 μg cholesterol Supplementary Figure I. Validation of cholesterol assay (Sigma ldrich catmk3). Colorimetric assay conducted according to manufacturers instructions on cholesterol standard. 1 Col 1 Col 3 1 GSK3α GSK3β β catenin whole cell lysates - + CT991 - +.5μmol/L CT991 Supplementary Figure II. CT991 inhibits GSK3α and GSK3β kinase activity. GSK3α and GSK3β were immunoprecipitated from whole cell Thp-1 macrophage lysates. Kinase activity was determined in the presence or absence of.5μmol/l CT991 (). Whole cell lysates from Thp-1 macrophages treated in the presence or absence of μmol/l CT991 were resolved by SDS page and probed for β catenin to demonstrate GSK3α/β inhibition (). n=3 p<.5 relative to cells of the same treatment without GSK3α/β inhibition S1

lipid accumulation/cell % Cell Viability % Cell Viability 1 - + - + - + - + CT991 UT Thaps GLN P UT 1μM Dox 1.5μM Dox μm Dox C 1.8 1.6 1. 1. 1..8.6... 1 1.5 μm Dox D 1 1.5 μm Dox Supplementary Figure III. poptosis does not induce foam cell formation. () Thp1 derived macrophages were exposed to the ER stress-inducing agents thapsigargin (Thaps, 1μmol/L), glucosamine (GLN, 5mmol/L) or palmitic acid (P, μmol/l) with or without pretreatment with CT991. Cell viability was determined after 18 hours. () Thp1 derived macrophages were exposed to, 1, 1.5 or μm Doxorubicin (Dox) for 6 hours and stained with Oil Red O, arrows indicate positive staining. (C) Quantification of Oil Red O staining. (D) Dox exposure induced apoptosis and reduced viability of Thp1 macrophages n=3, p<.5 relative to untreated cells. S

lipid accumulation/cell GRP78/ CHOP/ sirn sirn sirn sirn sirn UT Thaps GLN P GSK3α - GSK3β - GRP78 CHOP C 8 sirn GSK3α/β sirn D 5 sirn GSK3α/β sirn 6 3 1 E UT Thaps GLN P UT Thaps GLN P UT Thaps GLN P sirn GSK3α/β sirn F 5 sirn GSK3α/β sirn 3 1 UT Thaps GLN P S3

Supplementary Figure IV. Knockdown of GSK3α/β by sirn attenuates ER stress-induced CHOP expression and lipid accumulation. Thp1 derived macrophages were exposed to 5nmol/L scramble or GSK3α/β sirn. Knockdown of GSK3α/β protein levels was confirmed by SDS PGE(). Cells were subsequently treated with the ER stress-inducing agents thapsigargin (Thaps, 1μmol/L), glucosamine (GLN, 5mmol/L) or palmitic acid (P, μmol/l) for 18 hours. Whole cell lysates were resolved by SDS PGE and probed with antibodies against GRP78 and CHOP (). Immunoblots were quantified by densitometry (C and D). Cells were stained with Oil Red O and DPI and representative images are shown (E) and quantified (F). n= p<.5 relative to scramble sirn, untreated cells, p<.5 relative to cells of the same treatment without GSK3α/β sirn UT Thaps - + PERK inh CHOP Supplementary Figure V. PERK inhibitor (GSK61) attenuates PERK signaling. Whole well lysates from Thp-1 derived macrophages treated with 1μM thapsigargin (Thaps) in the presence or absence of 3μmol/L GSK61 (PERK Inhibitor) were resolved by SDS-PGE and probed for CHOP to demonstrate PERK inhibition. DPI Rat IgG Mouse IgG Rabbit IgG DPI Mac3 KDEL CHOP Supplementary Figure VI. IgG control antibodies. ortic sections were exposed to () pre-immune rat or mouse IgG antibodies to control for non specific binding of antibodies against Mac3 and KDEL respectively and () rabbit IgG antibodies to control for non specific binding of antibodies against CHOP. S

mrn/βctin mrn/βctin 1.8 1.6 1. 1. 1..8.6... Glutamate Dehydrogenase ns - + - + - + - + CT991 UT Thaps GLN P 1.6 1. 1. 1..8.6... Citrate Synthase Supplementary Figure VII. ER stress and CT991 do not impact the expression of glutamate dehydrogenase or citrate synthase. Thp1 derived macrophages were exposed to the ER stress-inducing agents thapsigargin (Thaps, 1μmol/L), glucosamine (GLN, 5mmol/L) or palmitic acid (P, μmol/l) for 18 hours with or without pretreatment with CT991. The mrn expression of () Glutamate Dehydrogenase and () Citrate Synthase was determined by real time PCR. n=3, ns = not significant. ns - + - + - + - + CT991 UT Thaps GLN P S5

μg cholesterol / mg protein μg cholesterol / mg protein Free Cholesterol UT - CT - CT - CT GSK3α/β inhibitor Thaps GLN P Cholesteryl Esters 1 1 1 8 6 UT - CT - CT - CT Thaps GLN P GSK3α/β inhibitor Supplementary Figure VIII. ER stress-induced cholesterol accumulation is attenuated by different GSK3α/β inhibitors. ER stress was induced in Thp-1 macrophages using 1μmol/L thapsigargin (Thaps), 5mmol/L glucosamine (GLN) or μmol/l palmitic acid (P). GSK3α/β was inhibited by treating cells with μmol/l CT991 (CT), or 5μmol/L GSK3 inhibitor II (Inh ), or mmol/l valproate (VP). Free () and esterified () cholesterol levels were determined, as indicated. n=3-, p<.5 relative to untreated cells, p<.5 relative to cells of the same treatment without GSK3α/β inhibition. S6

GSK3β/ μg cholesterol / mg protein μg cholesterol / mg protein Free Cholesterol Cholesteryl Esters 3 1 - + - + - + - + CT991 UT Thaps GLN P Supplementary Figure IX. GSK3α/β inhibition attenuates free cholesterol synthesis in macrophages cultured in lipoprotein-deficient media. ER stress was induced in Thp-1 macrophages cultured in lipoprotein free media using 1μmol/L thapsigargin (Thaps), 5mmol/L glucosamine (GLN) or μmol/l palmitic acid (P). GSK3α/β was inhibited by treating cells with μmol/l CT991. Free () and esterified () cholesterol levels were determined. ). n=3-, p<.5 relative to untreated cells, p<.5 relative to cells of the same treatment without CT991. GSK3β d-cmv- Null d-s9- GSK3β right field 8 6 - + - + - + - + CT991 UT Thaps GLN P d-cmv- Null GFP d-s9- GSK3β d-null d-gfp Supplementary Figure X. denovirus directed overexpression of GSK3β. Primary mouse macrophages were infected with control adenovirus (d-null) or adenovirus encoding constitutively active GSK3β (d-s9-gsk3β) at 1 MOI. () Protein lysates were resolved by SDS-PGE immunostained for GSK3β and as indicated and () quantified. Similarly, primary mouse macrophages were infected with d-null or adenovirus encoding GFP (d-gfp) at 1 MOI. right field and florescent images were captured and the percentage of cell expressing GFP was quantified (C). Quantification indicates 65.7±3.6% of cells are infected with the adenovirus. n=3 p<.5 relative to d-null S7