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Stifel Healthcare Conference Presentation NewLink Genetics Corporation NASDAQ: NLNK November 13, 2018

Cautionary Note Regarding Forward-Looking Statements This presentation contains forward-looking statements of NewLink Genetics that involve substantial risks and uncertainties. All statements, other than statements of historical facts, contained in this presentation are forwardlooking statements, within the meaning of The Private Securities Litigation Reform Act of 1995. The words "anticipate," "believe," "estimate," "expect," "intend," "may," "plan," "target," "potential," "will," "could," "should," "seek" or the negative of these terms or other similar expressions are intended to identify forward-looking statements, although not all forward-looking statements contain these identifying words. These forward-looking statements include, among others, statements about NewLink Genetics' financial guidance for 2018; results of its clinical trials for product candidates; its timing of release of data from ongoing clinical studies; its plans related to execution of clinical trials; plans related to moving additional indications into clinical development; NewLink Genetics' future financial performance, results of operations, cash position and sufficiency of capital resources to fund its operating requirements; the effects of its organizational realignment, and any other statements other than statements of historical fact. Actual results or events could differ materially from the plans, intentions and expectations disclosed in the forward-looking statements that NewLink Genetics makes due to a number of important factors, including those risks discussed in "Risk Factors" and elsewhere in NewLink Genetics' Annual Report on Form 10-K for the year ended December 31, 2017 and other reports filed with the U.S. Securities and Exchange Commission (SEC). The forward-looking statements in this presentation represent NewLink Genetics' views as of the date of this presentation. NewLink Genetics anticipates that subsequent events and developments will cause its views to change. However, while it may elect to update these forward-looking statements at some point in the future, it specifically disclaims any obligation to do so. You should, therefore, not rely on these forward-looking statements as representing NewLink Genetics' views as of any date subsequent to the date of this presentation. 2

NewLink Genetics A Clinical Development Stage Immuno-Oncology Company Clinical focus on cancer indications of great unmet need AML Recurrent pediatric brain tumors & DIPG Relapsed ovarian cancer Three drug candidates in development Indoximod NLG802, prodrug of indoximod NLG207 (formerly CRLX-101) Solid balance sheet to support clinical development programs Strong cash position Clinical focus and strong financial position support drug development strategy 3

Indoximod Clinical Programs Front-line diffuse intrinsic pontine glioma (DIPG) Indoximod plus radiotherapy for pediatric patients with DIPG Early data show all patients demonstrated initial symptomatic improvement on therapy Phase 1b trial ongoing with updated data anticipated 2019 Recurrent malignant pediatric brain tumors Indoximod plus radio-chemotherapy for pediatric patients with malignant brain tumors Phase 1b trial ongoing with updated data anticipated 1H 2019 Front-line acute myeloid leukemia (AML) Indoximod plus standard-of-care chemotherapy for patients with front-line AML Updated data July 2018 showed promising MRD-negativity with indoximod Phase 1b trial ongoing with updated data in oral presentation at ASH, December 2018 NLG802, prodrug of indoximod Preclinical data show significantly higher PK levels with NLG802 Phase 1 trial ongoing with updated data at SITC, November 2018 4

Indoximod Mechanism of Action A Unique Approach to Reversing Immunosuppression Orally administered, small-molecule that reverses the immunosuppressive effects of low tryptophan and high kynurenine that result from IDO activity Immuno-stimulatory effects of indoximod impact 4 main cell types: CD8 + T cells, CD4 + T helper cells, T regulatory cells, and dendritic cells Reverses the effects of low tryptophan by increasing proliferation of effector T cells Drives differentiation into T helper cells vs regulatory T cells Downregulates IDO expression in dendritic cells CD4 + T cell CD8 + T cell Enhances Helper T:Treg balance Treg Helper T cell Indoximod CD4 + T cell Treg Helper T cell DC IDO+ Potential synergy has been shown with checkpoint blockade, chemotherapy, radiation and vaccines Drives CD8 + T cell proliferation IDO Downregulates IDO protein IDO, indoleamine 2,3-dioxygenase; Treg, T regulatory cell; DC, dendritic cell. Brincks EL, et al. AACR 2018. Abstract 3753. 5

Indoximod vs Epacadostat: A Different Mechanism of Action Indoximod Drives Differentiation of Helper vs Regulatory T Cells 1 0 0 1 0 0 8 0 8 0 6 0 6 0 % fo x p 3 + a m o n g C D 4 + C D 2 5 + c e lls a m o n g C D 4 + c e lls T H 17 6 0 T re g 5 0 4 0 % IL -1 7 + 3 0 4 0 4 0 % fo x p 3 + a m o n g C D 4 + C D 2 5 + c e lls Indoximod Epacadostat 2 0 2 0 2 0 1 0 N o K Y N C o n tro l + K Y N C o n tro l 0-1 0 1 2 3 L o g [In d o x im o d ] ( M ) 0 0-4 -3-2 -1 0 L o g [E p a c a d o s ta t] ( M ) Foxp3 EC 50 = 8.5 µm Th17 EC 50 = 8.8 µm Indoximod reduces T-regs and increases effector T-cells Brincks EL, et al. AACR 2018. Abstract 3753. 6

Pediatric Brain Tumors Market Statistics and Indoximod Data ~4600 new cases of pediatric brain tumors diagnosed in US each year 1 ~70% of most common types have survival rates > 5 years Relapsed setting, conventional therapy is either unsuccessful or too toxic Recurrent brain tumors represent #1 cause of mortality in pediatric cancer Phase 1b data encouraging for indoximod + radio-chemotherapy in relapsed setting Targeting relapsed pediatric brain tumors Early data in 29 patients showed improved time on therapy & reduced toxicity 2 Trial ongoing with updated data presentation anticipated 1H 2019 1. American Cancer Society. 2 Johnson T, et al. SNO 2017, AACR 2018. Plenary #10973. 7

Early Results for Children with Diffuse Intrinsic Pontine Glioma (DIPG) Encouraging Early Data from Pilot Cohort of 10 Patients DIPG is rapidly fatal with significant unmet need Standard of care treatment is palliative radiation (usually 54 Gy) Median time to progression after radiation is ~6 months 1 No surgical options for patients with DIPG Encouraging updated results from Phase 1b trial presented at ISPNO July 2018 2 Phase 1 data suggest indoximod-based immunotherapy enhances conventional therapy Updated data at ISPNO July 18 showed 10/10 patients experienced symptomatic improvement At last report, longest time on study of 8.5 months 1. Wolff JE, et al. J Neurooncol. 2012;106(2):391-397. 2. Cohen KJ, et al. Neuro Oncol. 2011;13(4):410-416. 2 Johnson T, et al. International Symposium on Pediatric Neuro-Oncology (ISPNO) 2018. 8

DIPG Prognosis Worst of All Pediatric Cancers Pediatric Cancer 5-Year Survival Rates Defeat DIPG Foundation % of Patients 9

Encouraging DIPG Data Presented at ISPNO July 2018 Reported Results for 10 DIPG Patients (ISPNO July 2, 2018) 9/10 remained on study as of July 2 nd Longest treated 8.5 months at the time of last report 10/10 experienced initial improvement in symptoms 10

Acute Myeloid Leukemia (AML) AML Market Characteristics AML ~19,000 AML patients diagnosed in US per year 1 ~1/2 are Young & Fit for aggressive therapy ~1/2 are Unfit for aggressive therapy Target for Indoximod in 1L Setting Only ~25% of newly diagnosed AML patients expected to survive > 3 years 1 Recent clinical development has focused on second-line patient population Advancements in front-line therapy for young and fit patients have met with minimal success Newly-diagnosed AML continues to be an area of unmet need 1 American Society of Clinical Oncology 11

Indoximod plus Chemotherapy in Acute Myeloid Leukemia (AML) Phase 1b Exploring Minimal Residual Disease as a Surrogate Endpoint Combination with current standard of care (7+3) chemotherapy Minimal residual disease (MRD) evaluated by sensitive flow cytometry assay Data to be presented by Emadi, et al at ASH, December 2018 1 Indoximod was well tolerated and does not appear to add significant toxicity 21/25 (84%) ITT patients achieved morphologic complete response (CR) 15/19 (79%) per protocol patients achieved CR 10/12 (83%) patients MRD- at end of induction 11/11 (100%) patients MRD- at end of consolidation Currently enrolling Phase 1b expansion cohort 1 Emadi, A., et al. ASH 2018. Abstract 332. 12

NLG802, Indoximod Prodrug, Produces 4 to 5-Fold Increased Exposure in Humans Preliminary Phase 1 Data Presented at SITC 2018 Indicate Improved PK from NLG802 Prodrug NLG802 developed to improve bioavailability of indoximod Maximum tolerated dose (MTD) or maximum biologically achievable dose (MBAD) not yet reached with indoximod Early Phase 1 data show NLG802 improves indoximod exposure in humans 4 to 5-fold 1 NLG802 was well tolerated 1 1 Rixe, O., et al. SITC 2018, poster 331. 13

Biomarker Data Show Impact of Indoximod on Tumor Microenvironment Biopsy Data from Phase 2 Trials of Indoximod Presented at SITC 2018 Phase Phase 2 2 trial trial biopsy biopsy data data for for indoximod indoximod + pembrolizumab + pembrolizumab in advanced in advanced melanoma melanoma Indoximod + pembro induced multiple immunologic & metabolic changes in tumor microenvironment (TME) Comparison to published studies suggests indoximod + PD-1 inhibitor contributed to immunologic and metabolic changes in markedly different manner than PD-1 blockade alone Indoximod-based combination therapy in patients with high baseline IDO1 expression may have better prognosis Phase 2 trial biopsy data for indoximod + nab/paclitaxel in metastatic pancreatic cancer Phase 2 trial biopsy data for indoximod + nab/paclitaxel in metastatic pancreatic cancer Responders to indoximod + chemotherapy were observed to have changes in TME consistent with proposed MOA for indoximod In responders, indoximod + chemotherapy increased density and activity of intra-tumoral T cells and increased density of innate immune cells (NK cells, neutrophils) Combination therapy downregulated Tregs and IDO expression in TME Indoximod + chemotherapy associated with increase in innate and adaptive responses in TME 14

Findings from Biopsy Data for Indoximod + Pembrolizumab in Melanoma 1 Indoximod + anti-pd-1 leads to increase in immunity-related cells and decrease in melanoma-associated genes Indoximod + anti-pd-1 trends toward longer PFS in IDO high patients Time (months) Time (months) 1 Yu, J., et al. SITC 2018, poster 142. 15

Other Opportunities Clinical Programs Under Evaluation NLG207 (formerly CRLX-101) Nanoparticle formulation of the topoisomerase 1 inhibitor camptothecin Acquired from Cerulean Pharma Phase 2 trial to evaluate NLG207 plus weekly paclitaxel in recurrent ovarian cancer Trial conducted in conjunction with GOG Phase 2 data anticipated in 2019 Pursuing additional opportunities to expand our pipeline Multiple clinical opportunities addressing areas of unmet need 16

Anticipated Milestones Near-term Data December 2018: Updated Phase 1b AML data accepted for oral presentation at ASH 1H 2019: Updated Phase 1b pediatric brain tumors data anticipated 2019: Results from Phase 2 study of NLG207 (CRLX-101) anticipated Data from clinical programs anticipated near-term 17

Financial Position Q3 2018 End Cash and Equivalents Average Quarterly Cash Use Projected $122.1 Million ~$10 Million Cash Runway Projected Into 2H 2021 Shares Outstanding as of September 30, 2018 37.2 Million Resources sufficient to support focused clinical development programs 18

NewLink Genetics: Key Takeaways Clinical development plan targeting the most promising programs Recurrent pediatric brain tumors, front-line DIPG, front-line AML, NLG802, NLG207 Strong cash position Cash on hand at Q3 end $122.1 million Estimated cash runway into 2H 2021 excluding Ebola PRV monetization Substantial financial interest in Priority Review Voucher (PRV) associated with approval of the Ebola vaccine licensed by NewLink Genetics Indoximod data to be presented at upcoming medical conferences December 2018: Updated Phase 1b AML data presented in oral presentation at ASH 1H 2019: Updated data from Phase 1 trial of indoximod plus radiotherapy in DIPG anticipated 2019: Results from Phase 2 trial of NLG207 (formerly CRLX-101) plus paclitaxel in recurrent ovarian cancer anticipated 19

Supplemental Data 20

Phase 2 Results of Indoximod + Pembrolizumab in Advanced Melanoma Encouraging Overall and Complete Response Rates PFS, progression-free survival; CI, confidence interval; CR, complete response; PR, partial response; SD, stable disease; DCR, disease control rate; PD, progressive disease; BRAF, B-Raf proto-oncogene, serine/threonine kinase; IL-2, interleukin 2. * Excludes uveal melanoma patients. Prior systemic therapy includes BRAF inhibitors and IL-2. Note. All responses assessed per RECIST V 1.1. CR patients where best response in change in tumor volume is not 100% have target lesions that are pathological lymph nodes that are less than 10 mm. SD or PD patients with a reduction in tumor volume of 30% or more due to either unequivocal non-target lesion progression or an unconfirmed response. PD, progressive disease; SD, stable disease; PR, partial response; CR, complete response. * Patients who progressed due to new non-target lesions. Zakharia, Y, et al. ASCO 2018; Chicago, USA 21

Phase 2 Results of Indoximod + Pembrolizumab in Advanced Melanoma Impact of PD-L1 Status and IDO Expression PD-L1 Status Indoximod + Pembrolizumab Tissue available, n/n (%) 41/70 (59) IDO(+)Ki67(-) cells, most likely representing dendritic cells expressing IDO, tend to decrease IDO expression upon treatment in responders PD-L1(+) staining 22/41 (54) PD-L1(-) staining 19/41 (46) Response by PD-L1, % PD-L1(+) ORR 77% PD-L1(-) ORR 42% PD-L1, programmed death-ligand 1; ORR, overall response rate; IDO, indoleamine-pyrrole 2,3-dioxygenase; Pre-Tx, pretreatment; On-Tx, on-treatment. Zakharia Y, et al. ASCO 2018; Chicago, USA. 22

Phase 2 Results of Indoximod + Chemotherapy in Pancreatic Cancer Encouraging Activity Seen in Patients with Metastatic Pancreatic Cancer OS, overall survival; CI, confidence interval; PFS, progression-free survival; ORR, overall response rate; CR, complete response; PR, partial response; SD, stable disease; DCR, disease control rate; PD, progressive disease. * One patient was not evaluable for target response, but deemed stable for 11 mos. Note. All responses assessed per RECIST V 1.1. CR patients where best response in change in tumor volume is not 100% have target lesions that are pathological lymph nodes that are less than 10 mm. SD or PD patients with a reduction in tumor volume of 30% or more due to either unequivocal non-target lesion progression or an unconfirmed response. PD, progressive disease; SD, stable disease; PR, partial response; CR, complete response. * Patients who progressed due to new non-target lesions. Bahary, N, et al. ASCO 2018; Chicago, USA. 23