Repurposed RET Inhibitors : poor RET coverage in humans MKI Approved Dose Toxicities

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LOXO-292, a Potent, Highly Selective RET Inhibitor, in Multi-Kinase Inhibitor-Resistant RET Fusion-Positive Lung Cancer Patients with and without Brain Metastases Vamsidhar Velcheti 1, Todd Bauer 2, Vivek Subbiah 3, Maria E. Cabanillas 3, Nehal Lakhani 4, Lori J. Wirth 5, Geoffrey R. Oxnard 6, Manisha H. Shah 7, Eric J. Sherman 8, Melissa Johnson 2, Steven Smith 9, Todd Eary 9, Scott Cruickshank 9, Brian B. Tuch 9, Kevin Ebata 9, Michele Nguyen 9, Stefani Corsi-Travali 9, Stephen Michael Rothenberg 9, Alexander Drilon 8 1 Cleveland Clinic, Cleveland, OH; 2 Sarah Cannon Research Institute/Tennessee Oncology, PLLC, Nashville, TN; 3 The University of Texas MD Anderson Cancer Center, Houston, TX; 4 South Texas Accelerated Research Therapeutics (START) Midwest, Grand Rapids, MI; 5 Massachusetts General Hospital Cancer Center, Boston, MA; 6 Dana Farber Cancer Institute, Boston, MA; 7 The Ohio State University Comprehensive Cancer Center, Columbus, OH; 8 Memorial Sloan Kettering Cancer Center, New York, NY; 9 Loxo Oncology, Stamford, CT

Disclosures Dr. Vamsidhar Velcheti: advisory role/consultant for Astra Zeneca, Bristol-Myers Squibb, Merck, Novartis, Amgen, Foundation Medicine, Fulgent Genetics, Celgene, Genentech, Takeda Oncology and Clovis Oncology

Repurposed RET Inhibitors : poor RET coverage in humans MKI Approved Dose Toxicities RET Inhibition (Human C max )* Cabozantinib 140 mg QD Diarrhea, PPE, weight/appetite, fatigue, hypertension 51% Vandetanib 300 mg QD Diarrhea, hypertension, QT prolonged, fatigue, rash 24% Lenvatinib 24 mg QD Diarrhea, hypertension, weight/appetite, fatigue, proteinuria 47% Alectinib 600 mg BID ALT/AST/GGT/Bilirubin, anemia, nausea/vomiting, diarrhea 32% RET KDR/VEGFR2 FGFR1-3/EGFR MET/ALK/ROS Other kinases Cabozantinib Vandetanib Lenvatinib Alectinib *cellular (phospho-ret) inhibitory concentration corrected for human plasma protein binding and published human PK

LOXO-292: potent and selective RET inhibition Rationally designed, informed by proprietary crystallography insights Highly selective Fusion- and mutation-independent RET inhibition e.g. KIF5B-RET, CCDC6-RET C634W, M918T, V804L/M (gatekeeper acquired resistance) RET Favorable drug-like properties LOXO-292

(mean ± SEM, mm 3) Tumor Volume Tumor Volume Percent survival LOXO-292 s potential in lung cancer (1) Naïve RET Fusion (2) Potential acquired resistance 1000 500 KIF5B-RET (3T3) 0 0 5 10 15 Day (mean ± SEM, mm 3) CCDC6-RET V804M (PDX) 2000 1500 1000 500 0 0 2 6 9 13 16 20 23 26 28 Day (3) Brain metastases CCDC6-RET orthotopic brain (PDX) 100 50 0 0 20 40 60 80 100 Day Vehicle 3 mg/kg BID LOXO-292 10 mg/kg BID LOXO-292 30 mg/kg BID LOXO-292 40 mg/kg QD cabozantinib 20 mg/kg QD ponatinib Vehicle LOXO-292 30 Ponatinib 20 Day 52 Day 52 3 mg/kg BID 2 mg/kg QD

LOXO-292 in Plasma (ng/ml) LOXO-292 Phase 1 study in progress 28 patients enrolled to 4 dose levels (first patient dosed May 2017) No DLTs PK dose proportional and consistent with significant RET target engagement 1000 RET IC 90 100 RET IC 50 10 1 60 mg BID (Cohort 4, n=3) 40 mg BID (Cohort 3, n=6) 20 mg BID (Cohort 2, n=8) 20 mg QD (Cohort 1, n=5) 0 4 8 12 Time (h) on Day 8 (Steady-State) September 27, 2017 data cut-off date, cellular (phospho-ret) IC 50 /IC 90 corrected for human plasma protein binding

Patient 1: CCDC6-RET fusion 63-year old woman with advanced NSCLC: prior surgery, radiation, and chemotherapy After identification of CCDC6-RET fusion, received RXDX-105 for 7 months and then progressed First LOXO-292 patient treated with RET fusion lung cancer, on Phase 1 trial (20 mg QD) Confirmed PR by RECIST 1.1 (-44%) on 20 mg QD, dose escalated to 20 BID and currently 40 mg BID, remains on therapy in month 5

Patient 2: KIF5B-RET fusion 40-year old woman never-smoker with advanced NSCLC: 3 lines of chemotherapy, whole brain radiation, anti-pd1 antibody After identification of KIF5B-RET fusion, received 600 mg BID alectinib (PR, 7 months), increased to 900 mg BID for progressive brain metastases Treated with LOXO-292 under Single Patient Protocol due to symptomatic brain metastases (first LOXO-292 patient treated with RET fusion lung cancer with brain metastases) LOXO-292 administered by PK-guided intra-patient dose escalation, 20 mg/60 mg/100 mg BID Drilon et al., Cancer Discovery 2017 Sep;7(9):963-972, Published OnlineFirst June 3, 2017

LOXO-292 in Plasma (ng/ml) Patient 2 pharmacokinetics at current dose 10000 1000 100 10 1 100 mg BID Brain IC 90 Brain IC 50 Plasma IC 90 Plasma IC 50 0 4 8 Time (hours) Patient experienced dramatic clinical improvement Neurologic symptoms (memory loss, gait unsteadiness) improved within 7 days Confirmed systemic PR (-64%, RECIST 1.1) and CNS response (-89%, RANO-BM) Patient remains on therapy in month 4 cellular (phospho-ret) IC 50 /IC 90 corrected for plasma/brain protein binding and estimated CNS penetration

Systemic tumor response Pre-treatment LOXO-292 at 2 mo.

Intracranial tumor response Pre-treatment LOXO-292 at 3 mo.

Intracranial tumor response Pre-treatment LOXO-292 at 2 mo.

Conclusions LOXO-292: RET inhibition in ongoing Phase 1 trial already greater than multikinase (MKI) inhibitors Well-tolerated with no DLTs Biologically relevant doses Proof concept anti-tumor efficacy in patients with RET-fusion NSCLC Heavily pre-treated and MKI-experienced patients With/without brain metastases Phase 1 study currently enrolling patients 855-RET-4-292 (855-738-4292) clinicaltrials@loxooncology.com

Acknowledgements LOXO-292 patients, families and caregivers LOXO-292 Phase 1 investigators and research staff Alturas Analytics Array BioPharma Loxo Oncology