Tumor responses (patients responding/ patients treated)

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Table 1. ACT clinical trial tumor responses and toxicities. a Target antigen Cancer(s) Receptor type Tumor responses (patients responding/ patients treated) Immune-mediated toxicities (patients experiencing toxicity/ patients treated) gp100 Melanoma TCR 3/16 1 Skin rash (15/16) Uveitis (4/16) Hearing impairment (5/16) MART1 Melanoma TCR 6/20 1 Skin rash (14/20) Uveitis (11/20) Hearing impairment (10/20) CEA Colon cancer TCR 1/3 2 Colitis (3/3) CAIX Renal cell carcinoma CAR 0/8 3,4 Hepatotoxicity (4/8) b HER2/Neu Colon cancer CAR 0/1 5 Cytokine release syndrome (1/1) MAGE-A3/A9/A12 c Melanoma, synovial TCR 5/9 6 Central nervous system toxicities (4/9) cell sarcoma, esophageal cancer MAGE-A3/titin d Multiple myeloma, TCR 0/2 7 Cardiac toxicity (2/2) melanoma CD19 B-cell malignancies CAR 6/8 8 Prolonged B cell deficiency (4/8) Cytokine release syndrome (4/8) 3/3 9,10 Prolonged B cell deficiency (3/3) 2/2 11 Prolonged B cell deficiency (2/2) Cytokine release syndrome (2/2) 2/2 12 Cytokine release syndrome (2/2) GD2 Neuroblastoma CAR 1/7 13 None NY-ESO-1 Synovial cell sarcoma, melanoma TCR 9/17 14 None a Antigen receptor gene therapy trials in which regression of bulky tumors or autoimmune toxicities occurred. b All patients had at least grade 1 and four patients had grade 3 or 4 liver enzyme elevations. c The MAGE-A3-specific TCR targeted an epitope shared by MAGE-A3 and MAGE-A9 and had cross-reactivity against an epitope of MAGE-A12. d The MAGE-A3-specific TCR was cross-reactive against an epitope of titin.

Table 2. Rationally selected candidate target antigens for ACT. Antigen Tumor type Expression frequency (%) Healthy tissue expression Advantages Cancer testis antigens (testis-restricted or tissue-restricted) a CTAG1B Myeloma 7-36 Germ cells 15 Multiple tumor types, Adult T-cell leukemia 61 many potential Transitional cell 35-45 epitopes Medulloblastoma 20 Esophageal 41 squamous cell Oral squamous cell 28 Hepatocellular 1-44 Non-small cell lung 2-33 Melanoma 0-71 Ovarian 10-30 MAGEA1 Myeloma 20-52 Transitional cell 57 Glioblastoma 0-40 Head and neck 10-30 Hepatocellular 46-80 Non-small cell lung 10-70 Melanoma 16-90 Neuroblastoma 36 Serous ovarian 42 MAGE-C1 Myeloma 30-77 Medulloblastoma 28 Hepatocellular 48 Non-small cell lung 16-37 Melanoma 52 SSX2 Myeloma 12-23 Glioblastoma 29 Hepatocellular 9-47 Non-small cell lung 12-17 Melanoma 0-35 Sarcoma 50 MAGE-A2B Ependymoma 57 Medulloblastoma 18-60 Hepatocellular 35 Non-small cell lung 0-33 Melanoma 41-70 Serous ovarian 21 Osteosarcoma 82 Brachyury Lung 41 16 Thyroid, B- cells, testis 16,17 NY-BR-1 Breast 84 18 Breast, testis 18 Functionally important, many potential epitopes Many potential epitopes, cell surface Disadvantages MHC restricted, tissue restriction uncertain, frequency and intensity of positive cells varies MHC restricted, tissue restriction uncertain, frequency and intensity of positive cells varies Tissue restriction uncertain

expression Other tissue restricted antigens CD19 B-cell malignancies 100 B cells No MHC restriction Normal tissue targeted, escape variants 11 BCMA Multiple myeloma 100 B cells, plasma cells 19 No MHC restriction Normal tissue targeted Mutated proteins b KRAS G13D Colon 5 None Functionally important MHC restricted, few KRAS G12V Colon 7 epitopes, generally low Pancreas 18 frequency of mutation KRAS G12R Pancreas 7 KRAS G12D Colon 11 Pancreas 29 KRAS G12C Lung 7 EGFRviii Glioblastoma 24-67 20,21 None No MHC restriction, Frequency and intensity Head and neck 42 22 functionally important of positive cells varies Viral antigens HPV 16 E6 HPV 16 E7 Oropharynx 61 23 None Functionally important, constitutively Cervix 53 24 expressed, many Vagina 50 25 potential epitopes Vulva 30 25 Anus 70 25 Penis 28 26 MHC restricted HPV18 E6 HPV18 E7 Cervix 13 24 a Expression frequencies were extracted from the CTpedia database 27. All studies had 10 specimens tested. Tissues with 20% positive samples in at least one study are included. b Mutation frequencies are as reported by Warren and Holt 28.

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