Author's response to reviews

Similar documents
Author's response to reviews

The significance of mtor (mammalian target of rapamycin) activity in human lymphomas

Title: Persistent tumor cells in bone marrow of early breast cancer patients after primary surgery are associated with inferior outcome

Title: TIMP-1 and VEGF-165 serum concentration during first-line therapy of ovarian cancer patients

RE: Title: Practical fecal calprotectin cut-off value for Japanese patients with ulcerative colitis

Author's response to reviews

Scientific Editing Report

Supplementary Appendix to manuscript submitted by Trappe, R.U. et al:

Title: Accuracy and reliability of an NS1 rapid immunochromatographic test for DENV-1 diagnosis at point of care and in the laboratory

Title: MYBBP1A suppresses breast cancer tumorigenesis by enhancing the p53 dependent anoikis

Title:COX-2 overexpression in resected pancreatic head adenocarcinomas correlates with favourable prognosis

ANGPTL2 increases bone metastasis of breast cancer cells through. Tetsuro Masuda, Motoyoshi Endo, Yutaka Yamamoto, Haruki Odagiri, Tsuyoshi

Title:Fulvic acid attenuates homocysteine-induced cyclooxygenase-2 expression in human monocytes

Title: Differences between patients' and clinicians' report of sleep disturbance: A field study in mental health care in Norway.

Title: Cystatin E/M suppresses legumain activity and invasion of human melanoma

Title: Use of food labels by adolescents to make healthier choices on snacks: a cross sectional study from Sri Lanka

Solomon Graf, MD February 22, 2013

Bhatnagar et al, 2010 Cell Death and Disease Manuscript # CDDIS T

Title:Video-confidence: a qualitative exploration of videoconferencing for psychiatric emergencies

Cover Letter. Reviewer 1:

ID BMJ R4

Quantification of early stage lesions for loss of p53 should be shown in the main figures.

Significance of MYC/BCL2 Double Expression in Diffuse Large B-cell Lymphomas: A Single-center Observational Preliminary Study of 88 Cases

RESPONSE TO DECISION LETTER

Title: Sports activity and combined use of snus and cigarette smoking among young males in Finland in

Please revise your paper to respond to all of the comments by the reviewers. Their reports are available at the end of this letter, below.

Author's response to reviews

SUPPLEMENTARY INFORMATION

Title: The effects of videogames therapy on balance and attention in chronic ambulatory traumatic brain injury: an exploratory study.

Serum levels of soluble CD30 improve International Prognostic Score in predicting the outcome of advanced Hodgkin s lymphoma

Supplemental Figure S1. RANK expression on human lung cancer cells.

Surviving Leukemia And Hodgkin's Lymphoma: An Overview Of Effective Treatment Methods By Melinda Baxter READ ONLINE

Title: Validation of Metabolic Syndrome using medical records in the SUN cohort

mtor Inhibition Specifically Sensitizes Colorectal Cancers with KRAS or BRAF Mutations to BCL-2/BCL-

Title: Do general practitioners and psychiatrists agree about defining cure from depression? The DESCRIBE survey

Disclosures WOJCIECH JURCZAK

TRANSPARENCY COMMITTEE OPINION. 8 November 2006

Title:Modern contraceptive use among sexually active men in Uganda: Does discussion with a health worker matter?

SUPPLEMENTARY INFORMATION

Professor Mark Bower

ESMO DOUBLE-HIT LYMPHOMAS

Aggressive B-cell Lymphomas Updated WHO classification Elias Campo

Title: LATS2 is De-methylated and Overexpressed in Nasopharyngeal Carcinoma and Predicts Poor Prognosis of the Patients

BMJ - Decision on Manuscript ID BMJ

Supplemental Table 1 Molecular Profile of the SCLC Cell Line Panel

Author's response to reviews

Author's response to reviews. Title: Napsin A as a marker of clear cell ovarian carcinoma. Authors:

Title:Decisions on statin therapy by patients' opinions about survival gains: Cross sectional survey of general practitioners.

Author's response to reviews

Supplementary Figure S1 Expression of mir-181b in EOC (A) Kaplan-Meier

HODGKIN LYMPHOMA DR. ALEJANDRA ZARATE OSORNO HOSPITAL ESPAÑOL DE MEXICO

Changing Incidence of Hodgkin Lymphoma Histologic Subtypes: Risk Factor Trends or Evolving Diagnostic Practice?

Long term survival study of de-novo metastatic breast cancers with or without primary tumor resection

Title: Aggrecan heterogeneity in articular cartilage from patients with osteoarthritis

Title: Human chorionic gonadotropin and its relation to grade, stage and patient survival in ovarian cancer

Author's response to reviews

Title: A novel differential diagnostic model based on multiple biological parameters for immunoglobulin A nephropathy

NFIL3/E4BP4 controls Type 2 T helper cell cytokine expression

Supplementary Fig. 1: ATM is phosphorylated in HER2 breast cancer cell lines. (A) ATM is phosphorylated in SKBR3 cells depending on ATM and HER2

Nodular lymphocyte predominant Hodgkin lymphoma. Lymphoma Tumor Board. January 5, 2018

Title: Childhood osteomyelitis-incidence and differentiation from other acute onset musculoskeletal features in a population-based study

Title: Influenza vaccination among healthcare workers in a multidisciplinary University hospital in Italy

Response letter. Dear Reviewers,

Rituximab in Lymphoma and Chronic Lymphocytic Leukemia: A Clinical Practice Guideline, Version 3

Title:The implementation of an organised cervical screening programme in Poland: an analysis of the adherence to European guidelines

Title:Role of LPAR3, PKC and EGFR in LPA-induced cell migration in oral squamous carcinoma cells

Cytokeratin 5/6 expression in bladder cancer: association with clinicopathologic parameters and prognosis

Title:Inhibitory effects of astaxanthin on azoxymethane-induced colonic preneoplastic lesions in C57/BL/KsJ-db/db mice

Scientific Perspectives of Olaratumab Beyond the Approval Indication

Early interim PET (PET2) in Hodgkin Lymphoma patients treated with ABVD. An International Validation Study (IVS).

Author's response to reviews

Clinical Impact of t(14;18) in Diffuse Large B-cell Lymphoma

2012 by American Society of Hematology

Clinicopathologic Profile and Outcome of Extranodal Diffuse Large B-Cell NHL: Egyptian National Cancer Institute Experience

Author's response to reviews

REPORT ON PROSPECTIVE AUDIT OF LYMPHOMA PATIENTS BORDERS, FIFE, AND LOTHIAN DIAGNOSED IN 2008

17/10/2012. Could a persistent cough be whooping cough? Epidemiology and Statistics Module Lecture 3. Sandra Eldridge

Nature Genetics: doi: /ng Supplementary Figure 1. Phenotypic characterization of MES- and ADRN-type cells.

Only Estrogen receptor positive is not enough to predict the prognosis of breast cancer

Jose Merino (Chair), Georg Roeggla, Tiago Villaneuva, John Fletcher. Amy Price, Elisabeth Loder. Jamie Kirhham (statisticians), Rubin Minhas

Reporting Checklist for Nature Neuroscience

Author's response to reviews

TEB. Id4 p63 DAPI Merge. Id4 CK8 DAPI Merge

Title:Continuity of GP care is associated with lower use of complementary and alternative medical providers A population-based cross-sectional survey

Title: Survival endpoints in colorectal cancer. The effect of second primary other cancer on disease free survival.

Mediastinal B-cell Lymphomas

Title: Eye movements in patients with Whiplash Associated Disorders: a systematic review

Supplementary. properties of. network types. randomly sampled. subsets (75%

Supplementary Materials

Title: Home Exposure to Arabian Incense (Bakhour) and Asthma Symptoms in Children: A Community Survey in Two Regions in Oman

Author's response to reviews

FOLLICULAR LYMPHOMA: US vs. Europe: different approach on first relapse setting?

Conflict of interest in randomised controlled surgical trials: Systematic review, qualitative and quantitative analysis

EGFR kinase activity is required for TLR4 signaling and the septic shock response

Supplementary Figure 1. Basal level EGFR across a panel of ESCC lines. Immunoblots demonstrate the expression of phosphorylated and total EGFR as

Title: Estimation of the burden of varicella in Europe before the introduction of universal childhood immunization

Author s response to reviews

Incidence. Bimodal age incidence 15-40, >55 years Childhood form (0-14) more common in developing countries M:F=1.5:1; in all subtypes except NS

Conjunctival CD5+ MALT lymphoma and review of literatures

Type of file: PDF Size of file: 0 KB Title of file for HTML: Supplementary Information Description: Supplementary Figures

Transcription:

Author's response to reviews Title: Characteristic mtor activity in Hodgkin-lymphomas offers a potential therapeutic target in high risk disease - a combined tissue microarray, in vitro and in vivo study Authors: Agnes Mark (markagi@korb1.sote.hu) Melinda Hajdu (melindahajdu@gmail.com) Zsofia Varadi (v.zsofka@freemail.hu) Tamas B Sticz (tsticz@korb1.sote.hu) Noemi Nagy (n.noncsi@freemail.hu) Judit Csomor (jmj.csomor@gmail.com) Lajos Berczi (berczi33@gmail.com) Viktoria Varga (vivarga@gmail.com) Monika Csoka (csokam@t-online.hu) Laszlo Kopper (kopper@korb1.sote.hu) Anna Sebestyen (anna@korb1.sote.hu) Version: 2 Date: 21 January 2013 Author's response to reviews: see over

Author's response to reviews Title: Characteristic mtor activity in Hodgkin-lymphomas offers a potential therapeutic target in high risk disease a combined tissue microarray, in vitro and in vivo study Authors: Ágnes Márk (markagi@korb1.sote.hu), Melinda Hajdu (melindahajdu@gmail.com), Zsófia Váradi (v.zsofka@freemail.hu), Tamás Béla Sticz (tsticz@korb1.sote.hu), Noémi Nagy (n.noncsi@freemail.hu), Judit Csomor (jmj.csomor@gmail.com), Lajos Berczi (berczi33@gmail.com), Viktória Varga (vivarga@gmail.com), Monika Csóka (csokam@tonline.hu), László Kopper (kopper@korb1.sote.hu), Anna Sebestyén (anna@korb1.sote.hu) Version: 2 Date: 18 January 2013 Author's response to reviews: see over 1

Answer for the revision of the manuscript MS: 1873499574822427 entitled Characteristic mtor activity in Hodgkin-lymphomas offers a potential therapeutic target in high risk disease a combined tissue microarray, in vitro and in vivo study sent to Journal of BMC Cancer Dear Editor and Reviewers, I would like to thank you for the evaluation of our manuscript and for your helpful comments. All changes are highlighted in purple in the manuscript. Answers for Reviewer 1 (Miguel A Piris) - a more clear description of the results should be given, mean and standard errors for both tumoral and control samples Legends and results have been completed with mean and standard errors of in vitro and in vivo experiment data on Figure 5b-c, and on Figure 6. Significant correlations have been indicated in the figures and in the legends. - IHC results should be confirmed using Western blot in at least some of the experiments The specificity of ps6 antibody used for IHC was confirmed with Western-blotting in human Hodgkin lymphoma and Burkitt-lymphoma cell lines. Xenograft tumors from the same cell lines were also shown by IHC to display mtor activity. The other IHC antibodies are not recommended for other applications, but the data we obtained with antibody clones applicable for Western blotting support our IHC results. Please see the figure attached here for these WB and IHC results. The reliability of ps6 as a marker for mtor activity has been described in more detail in the results section, according to the reviewer s request (page 9) HT58 KMH2 HT58 KMH2 HT58 KMH2 HT58 xenograft control, p-s6 HT58 xenograft Rapamune, p-s6 ps6 32 kda pmtor (289kDa) mtor (289 kda) KMH2 xenograft control, p-s6 KMH2 xenograft Rapamune, p-s6 2

Figure: Evaluation of ps6 antibody specifity - it is unclear whether the results for HL justify some of the conclusions on the prognostic value of mtor expression in HL. The authors should provide more data on this, validation series, Kaplan-Meier analysis. The size of the series is probably insufficient for reaching valid conclusions According to the suggestions of both reviewers, figure 3 has been updated with Kaplan-Meier plots and log-rank test has been performed (Figure 3b). The methods, results and discussion sections have been completed with a specification of 72 cases and the connection of mtor activity (page 7-8, 12, 14). - experiments on a single cell lines should be confirmed using different cell lines Combination treatments were performed on KMH2, DEV and L1236 HL cell lines. Rapamycin significantly increased the apoptotic effect of doxorubicin, vincristine and etoposide in KMH2 and DEV cell lines. Results have been completed with these results, along with a clarified description of in vitro experiments (page 13). - rates on lymphoma incidence in Europe should have a citation The Background section has been completed with a citation about lymphoma incidence in Europe (page 4). The text has been modified accordingly. Modifications are highlighted in purple in the manuscript. Answer for Reviewer 2 (JUAN F GARCIA): 1. The series of patients is heterogeneous and include cases of both, early and advanced HL, and a relevant number of pediatric cases. Thus, limitations and potential bias must be comment in the discussion. As presented, correlations between mtor activation and clinical data are unclear. It could be useful the inclusion of relevant clinical data (ages, stages, histopathological Hodgkin subtypes ), and follow-up for the 72 cases analyzed in a table, showing the distribution and comparisons (Student s t-test) between cases with high versus low mtor activity. All clinical data, which was investigated for correlation with mtor activity have been clarified in the results and discussion, according to reviewer suggestions (page 7-8 and page 12 and 14). As the clinical data and mtor activity showed no significant correlations, we attach the table with all clinical characteristics of HL patients for the reviewer. We completed the results and the discussion section indicating which clinical data were examined for correlation with mtor activity, as the reviewer suggested; as we found no significant correlation, the table with detailed data is presented here for the reviewer only (see attached table). 3

We also included a sentence in the discussion about the difficulty of drawing statistically significant consequenses in this heterogeneous patient group, as the reviewer suggested (page 14-15). Characteristics Total number of cases High mtor activity Low mtor activity p All HL cases 83 77/83 (93%) 6/83 (7%) Age, y (n=83) <18 27 (33%) 24/27 (89%) 3/27 18-45 41 (49%) 39/41 (95%) 2/41 >45 15 (18%) 14/15 (93%) 1/15 0.62 # Gender (n=83) Male 40 (48%) 36/40 (90%) 4/40 Female 43 (52%) 41/43 (95%) 2/43 0.42 φ Ann Arbor stage (n=83) I-II 53 (64%) 49/53 (96%) 4/53 III-IV 30 (36%) 28/30 (97%) 2/30 1 φ B symptoms (n=83) Yes 25 (30%) 25/25 (100%) 0/25 No 58 (70%) 52/58 (95%) 6/58 0.17 φ Histological type (n=83) NS 47 (57%) 44/47 (94%) 3/47 MC 18 (22%) 17/18 (94%) 1/18 LR 8 (10%) 8/8 (100%) 0/8 LD 3 (4%) 3/3 (100%) 0/3 NLPHL 7 (8%) 5/7 (71%) 2/7 0.22 # All clinical data avalaible (n=72) Complete remission (disease free) 44/72 (61%) 40/44 (91%) 4/44 Relapsed patients (n=25) 25/72 (35%) 23/25 (92%) 2/25 CR after relapse 15/25 (60%) 13/15 (87%) 2/15 Transplanted 13/25 (52%) 12/13 (92%) 1*/13 Died 11/72 (15%) 11/11 (100%) 0/11 0.59 # *:This case with low mtor activity is in complete remission (more than 5 years) after transplantation. Statistical analysis was done with Fisher s exact test (φ) and with chi square test (#). Table. No correlation was found between mtor activity and the examined clinical parameters. The table includes the summary of all data with p values. 2. Also, the association between mtor activity and outcome could be better presented using Kaplan-Meier plots and log-rank test. The authors have the follow-up and survival data for the 72 cases and this could be easily included in material and methods and explained in the results section (page 11). According to the suggestions of both reviewers, figure 3 has been updated with Kaplan-Meier plots and log-rank test has been performed (Figure 3b). The methods, results and discussion 4

sections have been completed with a specification of 72 cases and the connection of mtor activity (page 7-8, 12, 14). 3. Figure 1, in panel 1F, positive cells seems to be mainly infiltrating macrophages, similarly to normal reactive germinal centers (panel 1L), but not real Burkitt lymphoma tumor cells; this need to be clarified; if not, it could be better to replace the microphotograph for panel 1F. According to reviewer s suggestion, panel 1F in figure1 has been changed for another Burkitt lymphoma case, in which there are no apoptotic forms and other disturbing effects which would complicate the interpretation of the figure. (The photo previously used was taken from a treated patient, showing a lot of apoptotic/necrotic forms as well as reactive macrophages. However, the specificity of the immunostaining can be demonstrated here by the negativity of the apoptotic/necrotic cells.) 4. Figure 2 only show results of high mtor activity for KMH2 cell line (WB and ELISA), whereas in page 11 the authors state that this high activity is found in all cell lines. This must be clarified. The activity of mtor has been determined using more methods in HL cell lines, and the text has been clarified accordingly in the results section (page 11). HL cell lines KMH2, UH-01, L428, L1236, HDLM2 and DEV showed high mtor activity by ICC (Figure 2b). ICC results were confirmed by both Western-blotting and ELISA in KMH2 cells, and either Western-blotting or ELISA was performed in the other cell lines as well (Figure 2). 5. In page 12, the authors indicate that mtorc2 expression is detected only in one HL case. A representative microphotograph can be included in Figure 4a for comparison, since only cases with very low expression are illustrated. Figure 4a has been modified, and the new version includes one photograph for Rictor overexpression as well. 6. In figure 4b, nuclear expression of p50 seems to be associated with high mtor activity; if this is the case, this could be further described and clarified in the legend and in the text (page 12). We described and clarified in the legend and in the text (page 12, 15) that Bcl-xL and NFkBp50 expression and mtor activity may correlate, but it was not significant. 7. In Figure 5, panel b do not show significant increase in apoptosis after 72 h of treatment, but in panel c the authors describe the combinatorial effects after 72 h. These discrepancies must be clarified. Also, figure 5c includes combinations of rapamycin and vincristine, but in the manuscript (page 12) the authors only mention the combinations with doxorubicin and etoposide. Do the asterisks (*) mean statistical significant increase?, this must be included in figure legend. The legends have been updated and the significant effects of rapamycin have been indicated in Figure 5b. Figure 5b shows that rapamycin monotherapy induced apoptosis at 96, 120 és 144h, which was significant (p<0.05). Figure 5c shows that rapamycin is able to enhance the effect of doxorubicin, vincristine and etoposide already after 24h. Asterisks (*) were included in Figure 5b to indicate statistical significance. 5

We would like to thank you for your constructive suggestions. We hope that the modifications and the comments will satisfy you and our revised manuscript can be considered for publication in BMC Cancer. We are submitting the revised version with the modifications highlighted. Figure 1, Figure 3, Figure 4a, Figure 5b-c and Figure 6 have been updated. Yours Sincerely, Anna Sebestyén, PhD corresponding author 6