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1 Human papillomavirus E6/E7 mrna testing has higher specificity than DNA methods in the evaluation of cervical intraepithelial neoplasia Jochen Möckel 1, Jens Quaas 2, Helga Meisel 3, Anne-Sophie Endres 3, and Volker Schneider 4 1 Universität Witten-Herdecke, Klinikum Wuppertal, Institut für Pathologie, Heusnerstrasse 40, 42283 Wuppertal 2 Praxis für Gynäkologie, Grünthal 22, 18437 Stralsund 3 Charité-Universitätsmedizin Berlin, Institut für Medizinische Virologie, Charité-Platz 1, 10117 Berlin 4 Pathologisches Labor, Burgunderstrasse 1, 79104 Freiburg Corresponding author: Dr. Volker Schneider, Burgunderstr. 1, 79104 Freiburg, Germany Tel: x49-761-30522; Fax: x49-761-36733 E-mail: volk.schneider@t-online.de

2 ABSTRACT Objective The study examined the specificity of HPV E6/E7 mrna testing for intraepithelial precursor lesions and invasive carcinoma of the uterine cervix in 358 women and compared the results with the most widely used DNA technique. Study Design For HPV E6/E7 mrna-testing an amplification assay (PreTect HPV-Proofer ) was used. For DNA determination a hybridization assay (Hybrid Capture 2 ) was applied. Both techniques were used simultaneously in patients with normal morphology (150), cervical intraepithelial neoplasia (173) and invasive carcinoma of the cervix (35). Results HPV DNA positivity rates were significantly higher than E6/E7 mrna in women with normal morphology (21% to 7 %), CIN 1 and 2 (75 % to 43 %) and CIN 3 (93 % to 63 %). In invasive cervical carcinoma both methods tested equally high (94% versus 97 %). Considering that E6/E7 upregulation represents the initial step in cervical carcinogenesis it can be assumed that this test allows a more specific detection of lesions with a potential for progression. Conclusion HPV E6/E7 mrna may serve as a more specific discriminator between transient cervical dysplasias and potentially progressive lesions. Accordingly, testing for high-risk HPV E6/E7 mrna might reduce the psychological burden associated with HPV-DNA testing and lower the financial costs by eliminating unnecessary diagnostic procedures. Key words: Cervical cancer screening, carcinoma of the cervix, molecular testing, HPV- DNA, HPV-RNA, specificity of cancer screening

3 Human papillomavirus (HPV) infections of the anogenital tract are associated with both, the development of benign genital warts and cervical intraepithelial neoplasia (CIN 1-3) and are considered essential in the etiology of cervical carcinoma 1. More than 110 different HPV types have been isolated, showing a strong, type-specific tropism for epithelia or mucosa 2. About 30-40 of them may infect the human cervical epithelium 3,4. A division into low- and high-risk HPV types has been suggested for clinical purposes 2. In Western Europe and North America about 95% of all HPV-positive invasive cervical carcinoma are associated with only five types, namely 16, 18, 31, 33, and 45 5. HPV is a very common virus among young, sexually active women, yet most infections are transient and asymptomatic 6,7. Only a small fraction of persistently infected women will subsequently develop cervical precursor lesions or carcinoma with a mean latency period in the order of 8-20 years 8. Therefore, testing for HPV DNA has poor specificity and a low positive predictive value 9 for the detection of significant precursor lesions of cervical carcinoma. In addition, HPV positivity carries a considerable psychological burden for healthy patients in a screening situation 10. Therefore, a more specific test to identify women with an increased risk of developing cervical carcinoma is needed. Overexpression of the viral oncogenes E6 and E7 is essential for cell transformation and immortalisation 11,12. E6 and E7 gene products initiate viral DNA replication and cell growth even in differentiated cells and abrogate programmed cell death mechanisms 13. Therefore, the measurement of upregulated E6 and E7 gene expression via elevated E6/E7 mrna-transcripts may serve as a more specific molecular marker in cervical carcinogenesis 14,15,16. The aim of this study was to test a commercially available RNA-based real-time amplification (NASBA) assay (PreTect HPV Proofer, NorChip AS, Klokkarstua, Norway), for the detection of an early upregulation of viral E6 and E7 mrna. For

comparison with DNA detection of HPV infections the most widely used method (Hybrid Capture 2, Qiagen, Hilden, Germany) was used. 4 MATERIALS AND METHODS Study population The study protocol was approved by the Committee for Medical Research Ethics of each region involved and written informed consent was obtained from each study participant before enrollment. Women were recruited by six hospital based gynaecological clinics (Freiburg, Homburg, Greifswald, Wuppertal, Stuttgart and Lahr) and two practicing gynecologists (Neu-Ulm and Stralsund) in Germany. A total of 429 women were initially enrolled into the study. After completion of the re-evaluation process of all cytologic and histologic specimens 71 women had to be excluded because of unavailability of cell material for re-evaluation (n=11), incomplete clinical data for study purposes (n=11), inadequate inclusion criteria for enrollment (i.e. vaginal or vulvar intraepithelial neoplasia, n=37), current or previous systemic chemo- or radiotherapy with the risk of falsifying effects to cell material (n=3), ambiguous cytological results without available review material (n=2), a malignant tumor of the cervix other than primary cervical carcinoma (i.e. cervical metastases of colonic carcinoma, n=7). Ultimately, 358 women met the inclusion criteria and were enrolled. Collection of specimens Conventional smears of the ecto- and endocervix were taken using a plastic spatula and a Cervex brush (Rovers, Holland) and immediately fixed with spray fixative or 100% ethanol. Remaining cell material of the spatula and/or brush was immersed into a methanol-based fixation medium (20 ml PreservCyt Solution, Cytyc, USA). The solution

5 was vortexed and divided into 5 ml for DNA testing and 15 ml for mrna testing. The specimens were blinded as to patient data. Cytological protocol Cytological smears were available from 349 patients. In 9 patients no smear was taken because an obvious cervical carcinoma was apparent clinically. The smears were stained according to Papanicolaou and read by local cytotechnologists and pathologists without knowledge of the HPV result. Histological protocol Histological material was obtained from 237 patients, immediately fixed in 4% buffered formalin for at least 24 hours, processed and stained with H&E. All slides were read by local pathologists without knowledge of the HPV result. The material ranged from small biopsies to extensive surgical material (i.e. radical hysterectomy with pelvic and para-aortic lymphadenectomy). According to the approval condition of the Ethics Committees, women with inconspicious colposcopy and a normal cervical smear did not qualify for any biopsy procedure. Second Review of cytological and histological samples All cytological smears and histological sections were re-evaluated independently by two pathologists (VS + JM), blinded to patient s name, history, HPV status, cytological or histological result. The review diagnosis was considered definitive. In five cases with discrepant results between the two reviewers, a final diagnosis was established in a subsequent interactive session. For cytology, the Munich II terminology, mandatory in Germany, was initially used. In contrast to the Bethesda System, this terminology combines mild and moderate dysplasia

6 into a single group and puts only severe dysplasia into the high grade group. For histology, the current WHO classification (2003) was employed. For better comparison with other cytological terminologies, cytological diagnoses were translated using the WHO classification (CIN 1, 2, 3). Amplification and detection of HPV E6/E7 mrna For detection of E6/E7 mrna, the PreTect HPV-Proofer assay (NorChip AS, Klokkarstua, Norway) was used. All analyses were performed at the Institute of Virology, Charité Hospital, Berlin, Germany. PreTect HPV-Proofer is a HPV type-specific assay and detects E6/E7 mrna of the high-risk HPV-types 16, 18, 31, 33 and 45 using the real-time multiplex NASBA-technique 17. The specificity of the products is increased by real-time detection by molecular beacons 18. Briefly, total RNA was extracted from 3 ml of the vortexed cervical material (15 ml) by the RNeasy Mini Kit (Qiagen, Hilden, Germany). The remaining 12 ml were stored for subsequent quality control and possible re-testing. Three times 5 µl (for each of the multiplex mixes) of the total RNA was subjected to the NASBA reaction. The signal was measured in real-time using a fluorescent reader (NorChip PreTect Analyzer). Relative signal augmentation 1.7 was considered as positive and below 1,4 as negative. Ambiguous values between 1.4 and 1.7 were re-tested and if confirmed, the result was assessed as positive. Hybrid Capture 2 : Detection of HPV DNA For the detection of high- and/or low-risk HPV DNA, the Hybrid Capture 2 (hc2) system (Qiagen, Hilden, Germany) was used. All analyses were performed at Labor Zimmermann, Wasserburg, Germany. This test is an in vitro nucleic acid hybridization assay for the

7 qualitative detection of low-risk (6, 11, 42, 43 and 44) and high/intermediate-risk HPV types (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59 and 68). Briefly, DNA was extracted from 4 ml of the vortexed cervical material, denaturated and hybridized with a specific RNA probe cocktail of the hc2 Sample Conversion Kit; 1 ml of the vortexed cell material was stored. Resultant RNA-DNA hybrids (150 µl) bound to alkaline phophatase conjugated antibodies were detected with a chemiluminescent substrate. The emitted signal was measured by a luminometer (Qiagen). Relative light units (RLUs) between 2 and 8 were considered as positive and below 2 as negative. Results were reported using the Digene DMS2 software. RESULTS Study Population The median age of all patients was 36.8 years (range 17-82). For patients with normal morphology it was 35,8 years (n=150, range 17-74), for CIN 1/2 34.8 years (n=75, range 21-64), for CIN 3 it was 37.3 years (n= 98, range 21-82) and for invasive cervical carcinoma 46,3 years (n=35, range 26-65). Morphological diagnosis and HPV results (Figure 1) The comparative correlation of the HPV mrna and DNA results is shown in Table I. The definitive morphological diagnosis was based on review cytology alone (n=112), combined cytology and histology (n=237) or histology alone (n=9). In all cases the review diagnosis was accepted as the final morphological diagnosis. Among 150 morphologically normal cases, 32 were high-risk HPV DNA positive (21%), 11 mrna-positive (7%). Of 75 women with CIN 1/2, 56 were high-risk HPV DNA positive (75%), 32 were positive by PreTect HPV-Proofer (43%). There were 98 cases with

8 CIN 3 of which 91 (93%) were high-risk HPV positive and 68 (69%) were positive with PreTect HPV-Proofer. In 35 cases with invasive carcinoma high-risk HPV DNA and E6/E7-mRNA showed almost identical positivity rates (94% vs. 97%, respectively). The two HPV DNA negative, but E6/E7 mrna positive cases turned out to be extensively bleeding cervical carcinomas with difficulty in taking proper cell material. DISCUSSION This study compared E6/E7 mrna detection with DNA testing for high-risk HPV in 358 women recruited in seven dysplasia clinics in Germany. A high-risk HPV DNA prevalence rate of 21 % in women with normal cytology confirms that a representative patient sample was recruited since it is equivalent to results of previous studies 5,7,9. The prevalence of E6/E7 mrna in women with normal cytology was significantly lower (7%) than the one of HPV DNA (21 %). Similarly, the positivity rate in CIN 1 to 3 was considerably lower with the E6/E7 mrna compared with DNA testing. E6/E7 upregulation represents the crucial initial step in cervical carcinogenesis. Therefore, it appears that E6/E7 testing allows for a more specific recognition of those intraepithelial lesions which tend to progress. Thus, high-risk HPV infected women with normal cytology and an elevated E6/E7 mrna level had a 69.8 times higher risk of having or developing progressive dysplasia compared with a factor of only 5.7 in mrna negative women 19. Similarly, a follow-up study using PreTect HPV-Proofer in high-risk HPV infected patients demonstrated an improved specificity of 55 % and higher positive predictive value for detecting histologically proven CIN3 20. Therefore, measurement of oncogenic HPV E6/E7 mrna may serve as a better discriminator than DNA testing to distinguish between transient low-grade lesions which

9 will spontaneously regress and the small percentage of women bearing a potentially transforming lesion. It may also serve as a valuable tool in the triaging of women with ASCUS or low-grade lesions of the cervix. ACKKNOWLEDGEMENTS: This study would not have been possible without the contribution and enthusiasm of those clinicians who notified patients, completed the data collection forms and sent cytological and histological samples to the study center: Dr. Hans Heyer, University Greifswald. Dr. Reinhard Kirchmayr, Ulm. Dr. Anja Grießhaber, Stuttgart. Dr. Markus Gantert, Wuppertal. Dr. Axel Göppinger, Lahr. Dr. Yves Garnier, Köln. DISCLOSURE OF INTERESTS: None to declare. ACKNOWLEDGEMENT The authors are grateful to Drs. Clad, Kirchmayr, Zimmermann and H for providing case material and laboratory results for this study.

10 References 1. zur Hausen H. Papillomaviruses and cancer: From basic studies to clinical application. Nat Rev Cancer 2002; 2:342-50. 2. Lowy DR, Howley PM. Papillomaviruses. In: Fields Virology, 4 th Edition. Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman, B, Straus SE (eds), Philadelphia: Lippincott Williams & Wilkins; 2001; 2231-2264. 3. Muñoz N, Bosch FX, de Sanjosé S, et al. Epidemiologic classification of human papillomavirus types associated with cervical cancer. New Engl J Med 2003; 348:518-27. 4. de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H. Classification of papillomaviruses. Virology 2004; 324:17-27. 5. Bosch FX, Manos MM, Muñoz N, et al. Prevalence of human papillomavirus in cervical cancer: a worldwide perspective. International biological study on cervical cancer (IBSCC). J Natl Cancer Inst 1995; 87:796-802. 6. Middleton K, Peh W, Southern S, et al. Organization of human papillomavirus productive cycle during neoplastic progression provides a basis for selection of diagnostic markers. J Virol 2003; 77:10186-201. 7. Baseman JG, Koutsky LA. The epidemiology of human papillomavirus infections. J Clin Virol 2005; 32 Suppl 1:16-24. 8. Nobbenhuis MA, Helmerhorst TJ, van den Brule AJ, et al. Cytological regression and clearance of high-risk human papillomavirus in women with an abnormal cervical smear. Lancet 2001; 358:1782-1783. 9. No authors listed. Human papillomavirus testing for triage of women with cytologic evidence of low-grade squamous intraepithelial lesions: baseline data from a randomized trial. The Atypical Squamous Cells of Undetermined Significance/Low-

11 Grade Squamous Intraepithelial Lesions Triage Study (ALTS) Group. J Natl Cancer Inst 2000; 92:397-402. 10. Maissi E, Marteau TM, Hankins M, et al. The psychological impact of human papillomavirus testing in women with borderline or mildly dyskaryotic cervical smear test results: cross sectional questionnaire study. Br J Cancer 2005; 92:990-4. 11. Münger K, Phelps WC, Bubb V, Howley PM, Schlegel R. The E6 and E7 genes of human papillomavirus type 16 together are necessary and sufficient for transformation of primary human keratinocytes. J Virol 1989; 63:4417-21. 12. Stoler MH, Rhodes CR, Whitbeck A, et al. Human papillomavirus type 16 and 18 gene expression in cervical neoplasias. Human Pathol 1992; 23:117-28. 13. Hawley-Nelson P, Vousden KH, Hubbert NL, Lowy DR, Schiller JT. HPV 16 E6 and E7 proteins cooperate to immortalize human foreskin keratinocytes. EMBO J 1989; 8:3905-10. 14. Rosty C, Sheffer M, Tsafrir D, et al. Identification of a proliferation gene cluster associated with HPV E6/E7 expression level and viral DNA load in invasive cervical carcinoma. Oncogene 2005; 24:7094-104. 15. de Boer MA, Jordanova ES, Kenter GG, et al. High human papillomavirus oncogene mrna expression and not viral DNA load is associated with poor prognosis in cervical cancer patients. Clin Cancer Res 2007; 13:132-8. 16. Wang-Johanning F, Lu DW, Wang Y, Johnson MR, Johanning GL. Quantitation of human papillomavirus 16 E6 and E7 DNA and RNA in residual material from ThinPrep Papanicolaou tests using real-time polymerase chain reaction analysis. Cancer 2002; 94:2199-2210. 17. Compton J. Nucleic acid sequence-based amplification. Nature 1991; 350: 91-2. 18. Tyagi S, Kramer FR. Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol 1996; 14:303-8.

12 19. Molden T, Nygård JF, Kraus I, et al. Predicting CIN2+ when detecting HPV mrna and DNA by PreTect HPV-Proofer and consensus PCR: a 2-year follow-up of women with ASCUS or LSIL Pap smear. Int J Cancer 2005; 114:973-76. 20. Varnai AD, Bollmann M, Bankfalvi A, et al. Predictive testing of early cervical precancer by detecting human papillomavirus E6/E7 mrna in cervical cytologies up to high-grade squamous intraepithelial lesions: diagnostic and prognostic implications. Oncol Rep 2008; 19:457-65.

13 100 90 80 70 60 % 50 40 30 20 10 0 CIN 0 CIN I/II CIN III ICC hrhpvdna E6/E7 mrna Table I: Fre que ncy of high-risk HPV DNA and E6/E7 mrna detection in cervical intraepithelial carcinoma and invasive ca.

14 n=358 Morphology hrhpv DNA+ lrhpv DNA+ hrhpv mrna + normal 150 32 20 11 (21%) (14%) (7%) CIN I/II 75 56 17 32 (75%) (23%) (43%) CIN III 98 91 5 68 (93%) (5%) (69%) Invasive 33 3 34 35 carcinoma (94%) (9%) (97%) Σ 358 212 44 145 hrhpv DNA+ mrna- 24 (24/32) 24 (24/56) 25 (25/91) 1 (1/33) hrhpv DNAmRNA+ 3 (3/11) 0 2 (2/68) 2 (2/34) Table II: Correlation of diagnoses with results of molecular testing.