Five Prime Therapeutics, Inc. Corporate Overview

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Five Prime Therapeutics, Inc. Corporate Overview June 2015 NASDAQ:FPRX

Forward-Looking Statements Disclaimer This presentation contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995. Words such as "may," "will," "expect," "plan," "anticipate" and similar expressions (as well as other words or expressions referencing future events or circumstances) are intended to identify forward-looking statements. These forward-looking statements reflect FivePrime's current beliefs and expectations. Each of these forward-looking statements involves risks and uncertainties. Actual results may differ from these forward-looking statements. Forwardlooking statements contained in this presentation include statements about (i) the timing of initiation, progress and scope of clinical trials for our product candidates; (ii) the timing of receipt of clinical results for our product candidates; (iii) the potential use of our product candidates to treat patients; (iv) the extent of gene amplification and protein overexpression in certain patient populations; (v) the advancement of our immuno-oncology program; and (vi) the period during which we expect to be able to fund operations. Many factors may cause differences between current expectations and actual results, including unexpected safety or efficacy data observed during preclinical or clinical studies, clinical site activation rates or clinical trial enrollment rates that are lower than expected, changes in expected or existing competition, failure of our collaborators to support or advance collaborations or product candidates and unexpected litigation or other disputes. Other factors that may cause our actual results to differ from current expectations are discussed in FivePrime's filings with the U.S. Securities and Exchange Commission, including the "Risk Factors" sections contained therein. Except as required by law, we assume no obligation to update any forward-looking statements contained herein to reflect any change in expectations, even as new information becomes available. 2

Investment Highlights 3 clinical-stage protein therapeutics covering 11 indications Competitive advantage in immuno-oncology Unique discovery platform for novel targets and protein drugs Clinical and research collaborations with BMS Platform generates assets valued by pharma; strong track record of deal-making 3

Platform: A Library of Substantially All Extracellular Proteins to Identify New Targets and Therapeutics Library of > 5700 Extracellular Proteins Proprietary Screens Secreted Factors Cell Surface Receptors Cell-based Screens In vivo Screens In Vivo Screens Protein Therapeutics Antibodies to Novel Targets (Secreted Proteins Or Receptors) Soluble Receptors (Ligand Traps) Soluble Receptors (Ligand Traps) Receptor-Ligand Matching 4

Many New IO Targets Remain to be Discovered in the Tumor Microenvironment Tumor Cell The Five Prime Immunome: ~500 Cell Surface Receptors Enriched for Regulators of the Immune Response to the Tumor The Five Prime Advantage: Functionally Screening the Entire Immunome T Cell Macrophage Cell-based Screens PD-1 FPxx FPyy In vivo Screens PDL-1 In Vivo Screens Tumor Cell Receptor-Ligand Matching 5

Our Current Focus: T Cells and TAMs T Cell Checkpoints Tumor-Associated Macrophages Identified multiple novel drug targets Two pathways partnered with BMS All other targets unpartnered Antibody work underway with Adimab, Vaccinex, and BMS FPA008 CSF1R antibody blocks TAMs Based on our discovery of IL-34 Phase 1a/1b with Opdivo in H2:2015 Future Expansion: Tregs, MDSC, and dendritic cells Goal: 1 IND per year beginning 2017 6

Clinical Pipeline: 3 Protein Therapeutics Covering 11 Indications INDICATIONS PRE-IND PHASE 1 PHASE 1B FPA008 CSF1R antibody 6 cancers in combination with Opdivo (nivolumab) PVNS Rheumatoid Arthritis FPA144 FGFR2b antibody Gastric Cancer Partnered FP-1039 (GSK 3052230) FGF ligand trap Squamous NSCLC Mesothelioma 7

FPA008 Antibody for Macrophage-Dependent Diseases 8

FPA008 Blocks Activation and Survival of Macrophages by Blocking Ligand Binding to CSF-1R FPA008 CSF-1 CSF-1R IL-34 (Discovered by FivePrime) Macrophages/Monocytes/Osteoclasts Survival Activation 9

CSF-1R Dependent Cells Play Pivotal Roles in Cancer, PVNS and Autoimmunity Monocytes Tumor-Associated Macrophages Macrophages in Joints Inflammatory Macrophages, Osteoclasts Cancer (Immuno- Oncology) Pigmented Villonodular Synovitis (PVNS) Rheumatoid Arthritis 10

Immuno-Oncology: FPA008 Reduces TAMs Tumor-associated macrophages (TAMs) are immunosuppressive correlate with poor prognosis are associated with resistance to IO therapy Depend on CSF-1R for survival Control Mouse FPA008 F4/80 Staining for Macrophages in the MC38 Tumor Model 11

Strong Rationale for Combining Blockers of CSF-1R and PD-1 TAMs and PD-1 Activation Suppress Tumor Killing TAM Reduction and PD-1 Inhibition Enhance Tumor Killing CSF-1R TAM CSF-1R TAM FPA008 nivolumab PD-L1 CD8 T Cell PD-1 PD-L1 Tumor cell CD8 T Cell PD-1 Tumor killing Tumor cell 12

CSF-1R Inhibition Synergizes with Checkpoint Inhibitors Pancreatic tumor model Tumor regression Zhu et al., (2014) Cancer Research 13

FPA008 Activity Synergizes with Immune Agonists MC38 Colon Cancer Xenograft Control Mouse FPA008 Anti-CD40 Combo FGK45 * Anti-CD40 * p<0.0001 Mouse FPA008 Potential for Future Combinations with Other IO Modalities 14

FPA008 Clinical Program 15

FPA008 Phase 1 Advancing Completed testing in healthy volunteers No dose-limiting toxicities All adverse events were grade 1 or 2 and reversible Well tolerated up to 3 mg/kg PK profile supports biweekly or less frequent dosing Advanced into open-label dosing in Rheumatoid Arthritis patients Data will be presented before end of 2015 16

FPA008 Caused Rapid and Sustained Reduction of Monocyte Biomarkers in Healthy Volunteers FPA008 selectively reduced CD16-positive monocytes -- cells associated with inflammation and cancer FPA008 also reduced bone turnover markers (osteoclast effect) CD16-positive Monocytes After a Single Dose CD16-positive monocytes per µ L blood 120 Placebo FPA008 1 mg/kg 100 FPA008 3 mg/kg 80 FPA008 10 mg/kg 60 40 20 0 0 1 2 3 4 5 6 7 8 9 10 11 12 W eeks 17

FPA008 & Nivolumab Combination Trial in Six Cancers Expected to Begin Mid-2015 Five Prime plans to conduct a Phase 1a/1b clinical trial 1a: Dose escalation to assess safety and tolerability of the combination 1b: Expand into six tumor settings to assess preliminary efficacy Demonstrated nivolumab activity Exploratory Non-small cell lung cancer* Melanoma* Head & neck Pancreatic cancer Colorectal cancer Malignant glioma *Approved indications for Opdivo (nivolumab) Five Prime retains full ownership of FPA008 18

PVNS is a CSF-1-Driven Orphan Disease Rare, locally aggressive tumor of synovium Over-expression of CSF-1 recruits macrophages forming the tumor mass High morbidity No approved therapies Phase 1/2 PVNS trial planned for mid-2015 IND cleared April 2015 Phase 1: Select optimal dose for Phase 2 Phase 2: Assess tumor shrinkage, pain and joint function 19

FPA144 Antibody for Gastric Cancer 20

FPA144: An Antibody to FGF Receptor 2b with Enhanced Cell Killing (ADCC) for Treating Gastric Cancer Recruits natural killer (NK) cells more effectively than native antibody Incorporates BioWa s POTELLIGENT glycoengineering technology 21

Rationale for Targeting FGFR2b in Gastric Cancer FGFR2 gene amplification occurs in ~5% of gastric cancer patients Additional patients may have tumors with FGFR2b protein overexpression without gene amplification Worldwide prevalence of gastric cancer: 1.5 million patients High unmet need: FGFR2 gene amplification or FGFR2b protein overexpression is associated with lower overall survival FPA144 is effective in preclinical models OCUM2 Gastric Cancer Xenograft 22

FPA144 Phase 1 Study Now Enrolling Patients Part 1A:Dose escalation in solid tumors; 3+3 design Part 1B: Unselected Gastric Cancer Part 2: Selected Gastric Cancer FISH-positive (~5%) FISH-negative, IHC-positive Safety, Response Rate Now Expected EOY 2015 Expect to begin dosing selected gastric cancer patients by EOY 2015 If clinical activity seen in Phase 1, potential for accelerated development (U.S. orphan drug) as monotherapy Potential future combination trial with front-line chemotherapy 23

FP-1039 Ligand Trap for Cancer 24

FP-1039 Selectively Blocks FGFR1 Ligands Cancer-Promoting FGFs Selectively blocks cancerpromoting FGFs that bind to FGFR1, not unrelated FGFs FP-1039 Tumor Cell Tumor cell growth Tumor cell survival FGFR1 FGFR1 amplification in sqnsclc is associated with diminished survival Safe and well-tolerated as monotherapy in Phase 1; target engagement demonstrated Avoids retinal detachment, hyperphosphatemia, mucositis, nailbed changes and asthenia seen with small molecule TKIs 25

GSK-Funded Phase 1b Clinical Trial of FP-1039/GSK3052230 (Study FGF117360) Global study enrolling 70 to 120 patients FGFR1 amplification (10-20%) Squamous NSCLC 1 st -line, paclitaxel/carboplatin Previously treated, docetaxel Safety and Tolerability in combination with SOC FGF2 ligand over-expression Mesothelioma 1 st -line, cisplatin/pemetrexed Dose/PK Overall Response Rate & Duration GSK plans to report preliminary data by EOY 2015 26

Financial Highlights Expect cash runway to extend into 1H2018 Past efficacy data readouts for all three clinical programs Move one or more new immuno-oncology candidates into clinical trials $217 million cash as of March 31, 2015 Guidance Expect 2015 net cash used in operating activities to be between $59 and $63 million Estimate ending 2015 with between $165 and $170 million in cash 27

Expectations PROGRAM INDICATION EXPECTATIONS FPA008 CSF1R antibody 6 Cancers Complete Phase 1a dose escalation & expand to Phase 1b by late 2015/early 2016 PVNS Initial data by late 2015 to early 2016 RA Present open-label RA data by end of 2015 FPA144 FGFR2b antibody Gastric Cancer Initial data from solid tumor & unselected gastric cancer patients by end of 2015 FP-1039 FGF ligand trap Squamous NSCLC & Mesothelioma GSK to present preliminary efficacy data by end of 2015 Immuno-Oncology Research Cancer Advance internal drug candidates to preclinical development 28

Investment Highlights 3 clinical-stage protein therapeutics covering 11 indications Competitive advantage in immuno-oncology Unique discovery platform for novel targets and protein drugs Clinical and research collaborations with BMS Platform generates assets valued by pharma; strong track record of deal-making 29