Toluidin-Staining of mast cells Ear tissue was fixed with Carnoy (60% ethanol, 30% chloroform, 10% acetic acid) overnight at 4 C, afterwards

Similar documents
Supplementary Table 3. 3 UTR primer sequences. Primer sequences used to amplify and clone the 3 UTR of each indicated gene are listed.

c Tuj1(-) apoptotic live 1 DIV 2 DIV 1 DIV 2 DIV Tuj1(+) Tuj1/GFP/DAPI Tuj1 DAPI GFP

a) Primary cultures derived from the pancreas of an 11-week-old Pdx1-Cre; K-MADM-p53

Supplementary Figure 1 a

Supplemental Data. Shin et al. Plant Cell. (2012) /tpc YFP N

Supplementary Figure 1. ROS induces rapid Sod1 nuclear localization in a dosagedependent manner. WT yeast cells (SZy1051) were treated with 4NQO at

Abbreviations: P- paraffin-embedded section; C, cryosection; Bio-SA, biotin-streptavidin-conjugated fluorescein amplification.

Supplementary Appendix

Figure S1. Analysis of genomic and cdna sequences of the targeted regions in WT-KI and

Supplementary Figure 1 MicroRNA expression in human synovial fibroblasts from different locations. MicroRNA, which were identified by RNAseq as most

Supplementary Document

Table S1. Oligonucleotides used for the in-house RT-PCR assays targeting the M, H7 or N9. Assay (s) Target Name Sequence (5 3 ) Comments

SUPPLEMENTARY INFORMATION

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1

Supplementary Materials

Supplemental Information. Cancer-Associated Fibroblasts Neutralize. the Anti-tumor Effect of CSF1 Receptor Blockade

Supplementary Table 2. Conserved regulatory elements in the promoters of CD36.

Supplementary Figures

CD31 5'-AGA GAC GGT CTT GTC GCA GT-3' 5 ' -TAC TGG GCT TCG AGA GCA GT-3'

Nature Immunology: doi: /ni.3836

Astaxanthin prevents and reverses diet-induced insulin resistance and. steatohepatitis in mice: A comparison with vitamin E

Citation for published version (APA): Oosterveer, M. H. (2009). Control of metabolic flux by nutrient sensors Groningen: s.n.

BIOLOGY 621 Identification of the Snorks

Supplemental Information. Th17 Lymphocytes Induce Neuronal. Cell Death in a Human ipsc-based. Model of Parkinson's Disease

Supplementary Figure 1

Cross-talk between mineralocorticoid and angiotensin II signaling for cardiac

Supplementary Figure 1

Supplementary Figure 1a

Supplementary Figure 1

Journal of Cell Science Supplementary information. Arl8b +/- Arl8b -/- Inset B. electron density. genotype

ice-cold 70% ethanol with gentle vortexing, incubated at -20 C for 4 hours, and washed with PBS.

Supplementary information

BHP 2-7 and Nthy-ori 3-1 cells were grown in RPMI1640 medium (Hyclone) supplemented with 10% fetal bovine serum (Gibco), 2mM L-glutamine, and 100 U/mL

Formylpeptide receptor2 contributes to colon epithelial homeostasis, inflammation, and tumorigenesis

SUPPLEMENTARY DATA. Supplementary Table 1. Primer sequences for qrt-pcr


Supplementary Information. Bamboo shoot fiber prevents obesity in mice by. modulating the gut microbiota

Culture Density (OD600) 0.1. Culture Density (OD600) Culture Density (OD600) Culture Density (OD600) Culture Density (OD600)

SUPPORTING INFORMATION

A smart acid nanosystem for ultrasensitive. live cell mrna imaging by the target-triggered intracellular self-assembly

Supplementary Materials and Methods

Phylogenetic analysis of human and chicken importins. Only five of six importins were studied because

Baseline clinical characteristics for the 81 CMML patients Routine diagnostic testing and statistical analyses... 3

Supporting Information

A basic helix loop helix transcription factor controls cell growth

Supporting Information. Mutational analysis of a phenazine biosynthetic gene cluster in

Supplementary Figure 1

Loyer, et al. microrna-21 contributes to NASH Suppl 1/15

SUPPLEMENTAL METHODS Cell culture RNA extraction and analysis Immunohistochemical analysis and laser capture microdissection (LCM)

Lezione 10. Sommario. Bioinformatica. Lezione 10: Sintesi proteica Synthesis of proteins Central dogma: DNA makes RNA makes proteins Genetic code

SUPPLEMENTARY INFORMATION

Relationship of the APOA5/A4/C3/A1 gene cluster and APOB gene polymorphisms with dyslipidemia

Supplemental Figures: Supplemental Figure 1

Supplementary Information

*To whom correspondence should be addressed. This PDF file includes:

CIRCRESAHA/2004/098145/R1 - ONLINE 1. Validation by Semi-quantitative Real-Time Reverse Transcription PCR

Beta Thalassemia Sami Khuri Department of Computer Science San José State University Spring 2015

Description of Supplementary Files. File Name: Supplementary Information Description: Supplementary Figures and Supplementary Tables

Isolate Sexual Idiomorph Species

PATIENTS AND METHODS. Subjects

University of Groningen. Vasoregression in incipient diabetic retinopathy Pfister, Frederick

Mutation Screening and Association Studies of the Human UCP 3 Gene in Normoglycemic and NIDDM Morbidly Obese Patients

Mutation analysis of a Chinese family with oculocutaneous albinism

TetR repressor-based bioreporters for the detection of doxycycline using Escherichia

Resistance to Tetracycline Antibiotics by Wangrong Yang, Ian F. Moore, Kalinka P. Koteva, Donald W. Hughes, David C. Bareich and Gerard D. Wright.

Plasmids Western blot analysis and immunostaining Flow Cytometry Cell surface biotinylation RNA isolation and cdna synthesis

Enhanced detection and serotyping of Streptococcus pneumoniae using multiplex polymerase chain reaction

Nucleotide Sequence of the Australian Bluetongue Virus Serotype 1 RNA Segment 10

Supplementary Figure 1: GPCR profiling and G q signaling in murine brown adipocytes (BA). a, Number of GPCRs with 2-fold lower expression in mature

Beta Thalassemia Case Study Introduction to Bioinformatics

Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis SUPPLEMENTARY INFORMATION

The Clinical Performance of Primary HPV Screening, Primary HPV Screening Plus Cytology Cotesting, and Cytology Alone at a Tertiary Care Hospital

Table S1. Primers used to quantitatively amplify the human mirnas precursors and indicated genes

Viral hepatitis, which affects half a billion people

Cancer Genetics 204 (2011) 45e52

Development of RT-qPCR-based molecular diagnostic assays for therapeutic target selection of breast cancer patients

SUPPLEMENTAL FIGURE 1

An epithelial circadian clock controls pulmonary inflammation and glucocorticoid action

Single-Molecule Analysis of Gene Expression Using Two-Color RNA- Labeling in Live Yeast

SUPPLEMENTARY INFORMATION

Supplementary Figure S1

mir-1202: A Primate Specific and Brain Enriched mirna Involved in Major Depression and Antidepressant Treatment. Supplementary Information

SUPPLEMENTARY RESULTS

Supplementary Data. Clinical Setup. References. Program for Embryo Donation

Malignant Amelanotic Melanoma of the Pleura without Primary Skin Lesion: An Autopsy Case Report. a a*

Detection of 549 new HLA alleles in potential stem cell donors from the United States, Poland and Germany

Nomenclature What is in a name? My name Joseˊ Jimenez = Bill Dana John L.C. Savony = Frank Fontaine

3) Table_S1: Clinical Characteristics of Breast Cancer Patients. 5) Table_S3: Primer sequences used for qt-pcr of ChIP samples

Isolation and Genetic Characterization of New Reassortant H3N1 Swine Influenza Virus from Pigs in the Midwestern United States

McAlpine PERK-GSK3 regulates foam cell formation. Supplemental Material. Supplementary Table I. Sequences of real time PCR primers.

Supplementary Material Hofko M et al., Detection of carbapenemases by real-time PCR and melt-curve analysis on the BD MAX TM System

Expression of Selected Inflammatory Cytokine Genes in Bladder Biopsies

Supplementary Materials for

Nucleotide diversity of the TNF gene region in an African village

HCV Persistence and Immune Evasion in the Absence of Memory T Cell Help.

INTERLEUKIN-10 FACILITATES BOTH CHOLESTEROL UPTAKE AND EFFLUX IN MACROPHAGES

Supplementary information

Advanced Subsidiary Unit 1: Lifestyle, Transport, Genes and Health

RESEARCH COMMUNICATION. Genotype Frequencies of Cyclooxygenease 2 (COX2) Rare Polymorphisms for Japanese with and without Colorectal Cancer

SUPPLEMENTARY INFORMATION

Transcription:

Toluidin-Staining of mast cells Ear tissue was fixed with Carnoy (60% ethanol, 30% chloroform, 10% acetic acid) overnight at 4 C, afterwards incubated in 100 % ethanol overnight at 4 C and embedded in paraffin. 5 µm sections were dewaxed, rehydrated in descending alcohol row, stained in toluidin blue solution (0,3 % in aqua bidest) for 10 min, dehydrated in an ascending alcohol row, cleared in Xylol and mounted with Entellan. Slides were analyzed in a blinded way using with an Axiovert 200M microscope (Carl Zeiss) equipped with AxioCam MR3 (Carl Zeiss) and AxioVision software (version 2.2.5).

gene name forward primer reverse primer designed by Elane tgg agg tca ttt ctg tgg tg ctg cac tga ccg gaa att tag Roche Ltf ggg caa gtg cgg ttt agt t cca ttg ctt ttg gag gat tt Roche Mmp9 acg aca tag acg gca tcc a gct gtg gtt cag ttg tgg tg Roche Mpo gga agg aga cct aga ggt tgg tag cac agg aag gcc aat g Roche Ngp gcc taa aga ctg cga ctt cc tga aga att tcc ctg tgc aa Roche Actb caa cga gcg gtt ccg atg gcc aca gga ttc cat acc ca RTprimerDB Btk ggc cat caa gat gat cag aga gct tct cat ggg aaa gat tca Roche Cebpa aaa caa cgc aac gtg gag a gcg gtc att gtc act ggt c Roche Cebpb tga tgc aat ccg gat caa cac gtg tgt tgc gtc agt c Roche Sfpi1 tct tct gca cgg gga gac ag gga cga gaa ctg gaa ggt acc Roche Gata1 gaa tcc tct gca tca aca agc ggg caa ggg ttc tga ggt Roche Csf2ra aga gcc agg aag cac acc cag tgc ttc atc ctc gtg tc GeneScript Csf3r tat gct agg gtc cag cga gt ggg agg ctc caa ttt cac a Roche Csf1r gtc atg tct ctg ctg gtg ct tgc ctt cgt atc tct cga tg GeneScript Gapdh gac ttc aac agc aac tcc cac tcc acc acc ctg ttg ctg ta RTprimerDB Hprt cct aag atg agc gca agt tga a cca cag gac tag aac acc tgc taa RTprimerDB Table S1. Depicted are sequences of the used primers as well as the company by which the primer was designed

Figure S1. Frequencies of myeloid cell populations are altered in spleens of Btk-deficient mice Spleens of wildtype (wt) and Btk-deficient (Btk-ko) mice were analyzed for the frequency of cell subpopulations indicated. (A-F) Cell suspensions of spleens from wildtype and Btk-deficient (Btk-ko) mice were (A) counted and stained for (B) B220, (C) CD11b, (D) CD11b/CD11c, (E) Gr-1 (F) CD11b/F4/80. Data presented are mean values (±SD). (*) P 0.05; (**) P 0.005; (***) P 0.0005. n represents the number of biological replicates. Figure S2. Frequencies of myeloid and erythroid cell populations in the blood and bone marrow of Xid mice Blood (A and B) from wildtype (CBA/J) and Xid/J mice were analyzed using an Animal Blood Counter for differential white blood cell counts. Frequencies (A) as well as cell numbers per volume (B) of lymphocytes, neutrophilic granulocytes and monocytes are shown. (C) The bone marrow cells of femurs of wildtype and Xid mice were stained for the expression analysis of surface markers CD11b (myeloid cells), Ter119 (erythrocytes) and B220 (lymphocytes). (D) The myeloid compartment was further analyzed by the expression of CD11b + Gr-1 + (granulocytes) and CD11b + Gr-1(monocytes). The frequency of cell populations was re-calculated for defined cell numbers per femur (E and F). Data presented are the mean values (±SD). (*) P 0.05. n represents the number of biological replicates. Figure S3. GMP deficient for Btk exhibit a decreased differentiation potential and drive myeloid development towards the granulocytic lineage upon TLR stimulation 500 GMP sorted out of individual wildtype and Btk-deficient (Btk-ko) mice were seeded in methylcellulose media supplemented with SCF, IL3, Flit-3 ligand and LPS (A to E) or SCF, IL3, Flit-3 ligand and Pam3CSK4 (F to H). The experiments were performed in triplicates. (A and F) After 6 days in culture colony-forming units were counted. (B and G) The cell number per CFU was calculated by determining the number of cells developing from 500 seeded GMP per CFU. (C and H) Differentiated cells were analyzed by flow cytometry for the surface marker CD11b, Gr-1 and F4/80. Data presented are the mean (±SD) of cell numbers positive either for the surface marker CD11b + /Gr-1 - /F4/80 - (undifferentiated cells), for CD11b + /Gr-1 + (granulocytes), or positive for CD11b + /F4/80 + (monocytes). (D) Twenty individual CFU per biological replicate were processed for cytospins and Pappenheim staining and analyzed for the cell content by morphology. A CFU was considered as CFU-M if more than 90% of the cells were macrophages, as CFU-G (here not detected) if more than 90% of cells were neutrophils, and CFU-GM if the content of macrophages and granulocytes was in between 20 to 80%. (E) One CFU with a representative size generated from wildtype or Btk-deficient (Btk-ko) GMP was photographed and is presented. Scale bars represent 200 µm. Data presented are the mean values (±SD). (**) P 0.005, (**) P 0.005. n represents the number of biological replicates. Figure S4. The numbers of granules are reduced in Btk deficient neutrophils Electron microscopy was performed using wildtype or Btk-deficient neutrophils. Representative images of each genotype are shown. Figure S5. Neither LPS nor G-CSF-treatment rescues the developmental phenotype of myeloid precursors or neutrophils in Btk-deficient mice

(A) Bone marrow obtained from wildtype and Btk-deficient mice were treated in vitro with G- CSF (Promokine; 25 ng/ml), GM-CSF (Miltenyi; 25 ng/ml), LPS (Invivogen; 10 µg/ml), or left untreated. The development of CD11b + /Gr-1 + granulocytes was analyzed by FACS after 72 hours of culture. (B to I) Animals were left untreated or injected intravenously with LPS, G-CSF, or GM-CSF in PBS (25 µg/kg body weight each). 36 hours later the blood of mice was taken and analyzed for relative and absolute numbers of granulocytes (B and C). Afterwards, mice were sacrificed and the bone marrow was analyzed for the absolute numbers of granulocytes per femur (D), their maturation status according the expression level of CD11b and Gr-1 (E). Additionally, changes in the myeloid precursor cell compartments were analyzed by FACS (F). GMP were isolated by FACS and analyzed by RT-PCR for the expression of C/EBPα (Cebpa), gelatinase (Mmp9) and Elastase (Elane) relative to the expression of Hprt1.

Figure S1

Figure S2

Figure S3

Figure S4

Figure S5