Combination of Oral Rigosertib and Injectable Azacitidine in Patients with Myelodysplastic Syndromes (MDS)

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Combination of Oral Rigosertib and Injectable Azacitidine in Patients with Myelodysplastic Syndromes (MDS) Shyamala C. Navada, MD 1, Guillermo Garcia-Manero, MD 2, Katherine Hearn, RN 2, Rosalie Odchimar-Reissig, RN 1, Erin Demakos, RN 1, Pierre Fenaux, MD, PhD 3, Michael E. Petrone, MD, MPH 4, Patrick S. Zbyszewski, MBA 4, Steven M. Fruchtman, MD 4, Lewis R. Silverman, MD 1 1 Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY; 2 MD Anderson Cancer Center, Houston, TX; 3 Hôpital St Louis/Université Paris; 4 Onconova Therapeutics, Inc., Newtown, PA

March 30 - April 2, 2014 Sheraton Sonoma County Petaluma, California Faculty Disclosure X No, nothing to disclose Yes, please specify: Company Name Honoraria/ Expenses Consulting/ Advisory Board Funded Research Royalties/ Patent Stock Options Ownership/ Equity Position Employee Other (please specify) Onconova Therapeutics x Off-Label Product Use Will you be presenting or referencing off-label or investigational use of a therapeutic product? No X Yes, please specify: Investigational use of rigosertib

Background: Treatment of Higher-risk MDS Azacitidine is standard of care for higher-risk MDS patients Clinical responses in MDS 45-50% a CR rate 7-17% Trilineage response rate of 24% All patients ultimately relapse or fail to respond; these patients have a poor prognosis, with a median overall survival (OS) of only 4-6 months b Currently, there are no accepted standard therapies after HMA failure a Silverman LR, McKenzie DR, Peterson BL, et al. Further analysis of trials with azacitidine in patients with myelodysplastic syndrome: studies 8421, 8921, and 9221 by the Cancer and Leukemia Group B. J Clin Oncol 2006;24(24): 3895-3903. b Prebet T, Gore SD, Estemi B, et al. Outcome of high-risk myelodysplastic syndrome after azacitidine treatment failure. J Clin Oncol 2011;29(24):3322-7.

Background: Rigosertib Novel agent that inhibits cellular signaling acting as a Ras mimetic that targets the Ras-binding domain (RBD) Proposed MOA blocks multiple cancer targets and has downstream effects on PI3K/AKT and Raf/PLK pathways Ras Mechanism may impact aberrant signaling in MDS Raf Initial Phase I/II studies suggested clinical activity in patients with MDS and AML Both oral and IV rigosertib are available this study used the oral formulation GTP Ras Rigosertib Divakar et al, AACR Annual Meeting 2014; abstract LB-108; Olnes et al, Leuk Res 2012;36:964-5; Chapman et al, Clin Cancer Res 2012;18:1979-91. Rigo Rigo Rigo Raf PI3K Other Effectors

Rigosertib is Synergistic with Azacitidine in Preclinical Studies Sequential exposure with rigosertib followed by azacitidine achieved maximum synergy at concentrations achievable in the clinical setting Combination Drug CI Ratio Description Rigosertib* (125 nm) + 5AzaC (2 um) 0.44 1:62.5 Synergism Rigosertib (125 nm) + 5AzaC (4 um) 0.30 1:31.25 Strong synergism Rigosertib (250 nm) + 5AzaC (2 um) 0.68 1:125 Synergism Rigosertib (250 nm) + 5AzaC (4 um) 0.57 1:62.5 Synergism Rigosertib (500 nm) + 5 AzaC (2 um) 0.63 1:250 Synergism Rigosertib (500 nm) + 5AzaC (4 um) 0.75 1:125 Moderate synergism Skiddan I, Zinzar S, Holland JF, et al. Toxicology of a novel small molecule ON1910Na on human bone marrow and leukemic cells in vitro. AACR Abstract 1310, April 2006; 47:309.

Background Phase I Rigosertib and Azacitidine Combination was well tolerated with evidence of efficacy in patients with MDS* The adverse event profile of the combination was similar to single-agent azacitidine * Navada S, Garcia-Manero G, Wilhelm F, et al. A phase I/II study of the combination of oral rigosertib and azacitidine in patients with myelodysplastic syndrome (MDS) or acute myeloid leukemia (AML). ASH 2014; Abstract 3252.

Eligibility Criteria for Phase 2 Diagnosis MDS, CMML IPSS Int-1, Int-2, or High risk Demographics ECOG PS 2 Age 18 years Prior Treatment Prior HMAs permitted No prior rigosertib Organ Function Creatinine 2.0 mg/dl Total bilirubin 2.0 mg/dl ALT/AST 2.5 x ULN

Study Endpoints Response Criteria Assessed per IWG 2006* Complete remission, partial remission or marrow CR Hematologic improvement in neutrophil, platelet, and erythroid lineages was assessed Safety and tolerability of combination * Cheson BD, Greenberg PL, Bennett JM, et al. Clinical application and proposal for modification of the International Working Group (IWG) response criteria in myelodysplasia. Blood 2006;108: 419-25.

Combination Trial Design Sequence Suggested by Preclinical Findings Treatment regimen: Week 1: Oral rigosertib BID (560 mg AM/280 mg PM) Week 2: Oral rigosertib + azacitidine (75 mg/m 2 /day SC or IV) Week 3: Oral rigosertib BID Week 4: No treatment Week 4 No Treatment Week 1 Oral Rigosertib only Week 3 Oral Rigosertib only Week 2 Oral Rigosertib + Azacitidine (SC or IV) Navada S, Garcia-Manero G, Wilhelm F, et al. A phase I/II study of the combination of oral rigosertib and azacitidine in patients with myelodysplastic syndrome (MDS) or acute myeloid leukemia (AML). ASH 2014; Abstract 3252.

Methods Phase 1 - Escalating-dose cohorts of oral rigosertib with standard-dose azacitidine in a classic 3+3 design in patients with MDS, CMML, or AML Initial recommendation for dosing of rigosertib in the Phase 2-560 mg in AM and 280 mg in PM Phase 2 - Patients with MDS and CMML, previously untreated, or had failed or progressed on a prior HMA Bone marrow aspirate/biopsy at Baseline, Week 4, and every 8 weeks after This analysis includes only the MDS patients from phase 1 and phase 2

Patient Characteristics Number of MDS patients treated 40 Age Median 66 Range 25-85 Sex Male 29 (73%) Female 11 (27%) ECOG performance status 0 9 (22%) 1 29 (73%) 2 2 (5%) IPSS classification Intermediate-1 12 (30%) Intermediate-2 15 (37%) High 13 (33%) IPSS-R cytogenetic risk Very Good/Good 14 (35%) Intermediate 12 (30%) Poor/Very Poor 10 (25%) Unknown 4 (10%) Prior HMA therapy Azacitidine 12 (30%) Decitabine 4 (10%) Both 1 (3%)

Efficacy Results Number of MDS patients treated Evaluable for response (8 Ph1, 25 Ph2) 40 33 Overall response 25 (76%) Complete remission (CR) 8 (24%) Partial remission 0 Marrow CR + Hematologic Improvement 10 (30%) Marrow CR alone 6 (18%) Hematologic Improvement alone 1 (3%) Stable disease 8 (24%) Progression 0 Not evaluable for response (per protocol) 7 (18%) Median duration of treatment (months) 6 (1-37+) Median time to initial/best response (cycles) 2/3 * Per IWG 2006

Response per IWG 2006 Among IPSS-R Subgroups Response per IWG 2006 Low/Intermediate N=8 High N=15 Very High N=13 Unknown N=4 CR 3 (38) 2 (13) 3 (23) 0 mcr 2 (25) 6 (40) 6 (46) 2 (50) SD 2 (25) 4 (27) 1 (8) 1 (25) PD 0 0 0 0 NE 0 3 (20) 3 (23) 1 (25) Erythroid Response 2 (25) 5 (33) 6 (46) 0 Platelet Response 3 (38) 5 (33) 6 (46) 1 (25) Neutrophil Response 4 (50) 5 (33) 4 (31) 0 Overall Response 6 (75) 8 (53) 9 (69) 2 (50)

Study 09-08 Duration of Complete Remission

Study 09-08 Duration of Marrow CR* ** *CR, mcr, or mcr with HI ** Excludes 1 patient with <5% blasts at baseline

Efficacy: MDS Patients with Prior HMA Failure Number of patients evaluable for response (3 Ph1, 10 Ph2) 13 (10 AZA, 2 DAC, 1 both) Number of prior HMA cycles 4-20 Hematologic response per IWG 2006 8 (62%) Complete remission (CR) 1 (8%) Partial remission 0 Marrow CR with concurrent HI 4 (31%) Marrow CR alone 3 (23%) Stable disease 5 (38%) Progressive disease 0 Hematologic improvement (trilineage) 4 HMA-naïve patients (N=20) response per IWG 17 (85%)

Hematology Trends for Patient 101-006 Hemoglobin Platelets Neutrophils 12 cycles of AZA stable disease RBC and platelet transfusions Blasts 7% Monosomy 7 RUNX-1 AZA + RIG in 09-08 for 20+ months Complete remission RBC transfusion independent <5% blasts PB CR criteria

Rigosertib alone and in combination with azacitidine has Epigenetic effects in vitro and in vivo Rigosertib modulates HDACs (class I, II and IV) and DNMT1 in MDS and AML cells in vitro Rigosertib alone or in combination with AZA leads to different levels of histone methylation and acetylation altering activator/repressor marks Rigosertib alone or in combination with Azacitidine down regulated the AKT pathway and reduced cell cycle check point protein levels; an increase in apoptosis was demonstrated only with the combination. Similar effects on chromatin were seen in preliminary data from patients before and after the first cycle of treatment Chaurasia et al MDS Symposium Valencia Spain 2017 Effects of rigosertib on HDACs (class I, II and IV) and DNMT1 Effect of RIGO alone or in combination with AZA on cell cycle check proteins, apoptosis and AKT cell signaling pathway

Adverse Events Table 3: Most Common Treatment-emergent AEs Among Pts with MDS, All Grades (N = 40) MedDRA Preferred Number (%) of Patients Term All Grades Grade 3 Any TEAE 40 (100) 38 (95) Constipation 18 (45) - Diarrhea 17 (43) 1 (3) Nausea 17 (43) - Hematuria 16 (40) 5 (13) Dysuria 16 (40) 3 (8) Fatigue 16 (40) - Decreased appetite 15 (38) - Thrombocytopenia 13 (33) 13 (33) Pyrexia 13 (33) - Neutropenia 12 (30) 12 (30) Arthralgia 11 (28) 1 (3) MedDRA = Medical Dictionary of Regulatory Activities

Conclusions Oral rigosertib and azacitidine demonstrated an overall response rate of 76% in patients with MDS. 62% of patients who had previously received an HMA and either did not respond or relapsed, responded to the combination; this represents a novel and important observation. The combination is well tolerated in patients with MDS and has a safety profile similar to single-agent azacitidine. Repetitive cycles of the combination can be safely administered without evidence of cumulative toxicity. Further exploration of this combination is warranted in defined MDS populations.

Acknowledgments Patients Research Coordinators Icahn School of Medicine at Mount Sinai MD Anderson Cancer Center Hôpital St Louis/Université Paris Onconova Therapeutics, Inc.