BioMarin Pharmaceutical Inc. Conference Call to Discuss Approval of

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BioMarin Pharmaceutical Inc. Conference Call to Discuss Approval of For adult patients with PKU who have uncontrolled blood phenylalanine (Phe) concentrations > 600 µmol/l on existing management May 24, 2018

Safe Harbor Statement This presentation contains forward-looking statements about the business prospects of BioMarin Pharmaceutical Inc., including, without limitation, statements about: expectations regarding the approval of Palynziq, BioMarin's ability to support the launch of a new product and ship to specialty pharmacies, BioMarin's development programs for Palynziq generally, the services to be provided by BioMarin s RareConnections and the results of the Phase 3 pivotal trial and an ongoing extension studies of Palynziq. These forward-looking statements are predictions and involve risks and uncertainties such that actual results may differ materially from these statements. These risks and uncertainties include, among others: actions by regulatory agencies other than the FDA, results and timing of current and planned clinical trials of BioMarin s products, the risks related to the commercialization of Palynziq, our ability to manufacture sufficient quantities of Palynziq for clinical trials and the commercial launch of Palynziq in the United States, the market potential for Palynziq as a treatment for PKU in adults; and those other risks detailed from time to time under the caption Risk Factors and elsewhere in the Company s Securities and Exchange Commission (SEC) filings including the Annual Report on Form on Form 10-Q for the quarter ended March 31, 2018, and future filings and reports by the Company. The Company undertakes no duty or obligation to update any forward-looking statements contained in this Current Report on Form 8-K as a result of new information, future events or changes in its expectations. BioMarin is a registered trademark, and Palynziq is a trademark of BioMarin Pharmaceutical Inc. 2

7 Commercialized Products Palynziq represents the next phase of expansion in our PKU franchise and $1B opportunity Commercialized Products 3

Palynziq Commercial Opportunity: Our Largest to Date 1 PKU patients defined as patients diagnosed through newborn screening 4

Label Enables Flexibility for Patients Dosing schedule expected to result in significant Phe reductions and patient retention INDICATIONS AND USAGE: Palynziq is indicated to reduce blood phenylalanine concentrations in adult patients with PKU who have uncontrolled blood Phe concentrations >600 µmol/l on existing management. DOSAGE AND ADMINISTRATION: Induction/Titration recommendations consistent with clinical trial experience. Maintenance dose determined by patient tolerability, blood phenylalanine concentration and dietary protein and phenylalanine intake, using the lowest effective dosage of 20 mg/day, up to maximum of 40 mg/day. Prescribers may consider increasing to a maximum of 40 mg/day in patients who have not achieved a response with 20 mg/day for at least 24 weeks. Discontinue patients who have not responded after 16 weeks of continuous treatment with the maximum dosage of 40 mg/day. CLINICAL STUDIES: Describes profound effect in reducing phe levels; an unprecedented outcome in adult population where the mean blood Phe is typically > 1200 µmol/l at baseline. 5

Palynziq Safety Management Requirements BOXED WARNING: RISK OF ANAPHYLAXIS Initial dose under healthcare provider supervision. Prior to self-injection, patient competency with self-administration, ability to recognize anaphylaxis and administer epinephrine is confirmed. Prescribe auto-injectable epinephrine to all patients treated with Palynziq. Adult observer for patients who may need assistance in recognizing and managing anaphylaxis. Consider the risks and benefits of re-administering Palynziq following an episode of anaphylaxis. WARNINGS AND PRECAUTIONS: Hypersensitivity Reactions Other than Anaphylaxis: Premedication is based upon individual patient tolerability. Management should be based on the severity of the reaction, recurrence, and clinical judgement, and may include dosage adjustment, temporary drug interruption, or treatment with antihistamines, antipyretics, and/or corticosteroids. ADVERSE REACTIONS: Most common adverse reactions (at least 20% in either treatment phase) are injection site reactions, arthralgia, hypersensitivity reactions, headache, generalized skin reactions lasting at least 14 days, pruritus, nausea, abdominal pain, oropharyngeal pain, vomiting, cough, diarrhea, and fatigue. Rates of adverse reactions generally decreased over time. The types and rate of adverse reactions reported during the maintenance phase in patients who received 20 mg once daily and 40 mg once daily were similar and for some stayed relatively stable. 6

As Proposed: Risk Evaluation and Mitigation Strategy Straightforward Palynziq REMS Program to Help Support Safe Use 7

Standard Approval and Full Steam Ahead! The first and only enzyme substitution therapy that addresses the underlying cause of PKU 8

Prioritize Experienced Palynziq Clinics followed by Top 30 Naïve Clinics 125 PKU Clinics in the US Currently Managing Patients with Kuvan or Diet 32 Palynizq Experienced Clinics (50% of adult in-clinic PKU patients) 30 Top target large PKU clinics Palynziq naïve (35% of adult inclinic PKU patients 9

10 Years Experience Working with US PKU Clinics and Patients Our Exclusive Patient Support Networks Facilitate the Treatment Journey Field based clinical support for Palynziq induction and titration schedule Robust educational materials for HCPs and patients Seamless access and distribution of Palynziq across multiple doses and injection schedules throughout the induction and titration period 10

Priced to Reflect the Never-Before-Seen Efficacy for Adults with PKU Flat WAC-price of $488/unit The average annual net cost of therapy for a typical patient is expected to be approximately $192,000 per year based on an average of 1.5 units per patient at maintenance dosing 11

Induction and Titration Schedule to Maintenance Dosing 12

The U.S. Commercial Team is Ready to Go! Evaluating Launch Progress over the Next 6 Quarters YE2018 Key Metrics for Performance: Total # Patients (Trial + Naïve) # Clinics with >=1 Prescription 2018 Top Priorities: 1 Transitioning Clinical Trial Patients to Commercial Product (from the 32 Palynziq-experienced sites) 2 Onboarding Naïve Patients from the 32 Palynziq-experienced Clinics 3 Onboarding Patients Within the Top ~30 Targeted Palynziq-naïve Clinics 13

THANK YOU 14