Multiplex LC-MS/MS lysosphingolipids analysis in plasma for the screening of sphingolipidoses and Niemann-Pick type C disease

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Multiplex LC-MS/MS lysosphingolipids analysis in plasma for the screening of sphingolipidoses and Niemann-Pick type C disease Magali PETTAZZONI Service de Biochimie et Biologie Moléculaire Grand Est Unité des Maladies Héréditaires du Métabolisme Centre de Biologie Est Hospices Civils de Lyon FRANCE Monique Piraud, Cécile Pagan, David Cheillan, Christine Vianey-Saban, Roseline Froissart.

Sphingolipidoses The measurement of the primary accumulated sphingolipids in plasma is poorly informative Diagnosis based on enzymatic testing Filipin staining test Chitotriosidase (CCL18) (P) Courtesy of Dr M-T. Vanier, Lyon France Niemann-Pick Type C Lysosomal cholesterol trafficking and lipid storage disorder

Sphingolipids/LysoSphingolipids in plasma Glucosylceramide Ceramide From Sun and Zhang, Advances in Gaucher Disease: Basic and Clinical Perspectives 260 pages, August 2013. Future Medicine Ltd. LysoGlucosylceramide / Glucosylsphingosine without fatty acid 2 Lysosphingolipids (LysoSL) = deacylated form of the sphingolipids Role in pathophysiology? With the use of MS/MS Emerging biomarkers in plasma for screening of sphingolipidoses and Niemann-Pick type C

Tandem Mass Spectrometry Very sensitive, very specific technique Allows the simultaneous measurement of numerous compounds all together, in complex mixtures, according to specific fragmentation of each molecule «TRANSITION» = pair of (precursor ion)/(product ion) Sample Echantillon Ionisation S Q 1 Q 2 Source Source source d ionisation Triple quadrupole Analyseur Détecteur Detector d ionisation Q 3 D Abondance m/z

LysoGlobotriaosylceramide (LysoGb 3 ) Lysogalactosyl-ceramide (LysoGalCer) Lysoglucosyl-ceramide (LysoGlcCer) Lysosphingomyelin (LysoSM) LC-MS/MS LysoSLs measurement Fabry Krabbe Gaucher Niemann-Pick A/B LysoSM analogue 509 (LysoSM509) Niemann-Pick A/B and C Aerts et al. Proc Natl Acad Sci USA, 2008 (not MS/MS) Boutin et al. Clin Chim Acta, 2012 Chuang et al. Clin Chim Acta 2013 Dekker et al. Blood 2011 Chuang et al. Mol Genet Metab 2014 Giese et al. Orphanet J Rare Dis 2015 Lysosulfatide (LysoSulf) Metachromatic leukodystrophy Mirzaian et al. Blood cell Mol Dis 2015 Polo et al. Clin Chem Lab Med 2016 + LysoGM1 ganglioside (LysoGM1) + LysoGM2 ganglioside (LysoGM2) Mirzaian et al. Clin Chim Acta 2017 Pettazzoni M et al. PLoS One. 2017

Method Extraction/Purification 200 µl of EDTA plasma + IS + MeOH SPE (Oasis MCX, 30 mg, 60 μm, Waters Corp) Liquid chromatography C8 column (Uptisphère. Interchim ) Gradient of elution(phase A: H2O 0.2% FA, Phase B ACN 0.2% FA) MS/MS Multiple Reaction Monitoring Mode (MRM) Analyte STANDARDS Internal Standard ** MODE TRANSITION Lyso Gb3 Lyso Gb 3 Glycinated lysogb 3 Positive 786.5 > 282.3 API 4500 Q-Trap (AbSciex ) Lyso HexCer Lyso GlcCer Lyso GlcCer d5 Positive 462.3 > 282.3 Lyso SM Lyso SM d18:1 Lyso SM d17 :1 Positive 465.3 > 184 Lyso SM 509 Lyso SM d18:1 Lyso SM d17 :1 Positive 509.3 > 184 Lyso GM1 Lyso GM1 S1P d17 :1 Negative 1278.6 > 290.1 Lyso GM2 / S1P d17 :1 Negative 1116.6 > 290.1* Positive mode * No standard; calculated from mass/structure ** Commercially available LysoSM 465.3>184 LysoGb3 786.5>282.3 LysoGalCer 462.3>282.3 LysoGlcCer 462.3>282.3 LysoGLUCOSYLceramide and lysogalactosylceramide: not separated Measured as lysohexosylceramide «LysoHexCer» LysoGb3 Gly (IS) 843.5>339.3 LysoSM d17 (IS) 451.3>184 LysoGlcCer d5 (IS) 467.3>285.3 Quantitative validation Except LysoGM1 and LysoGM2

LysoSL multiplex measurement: Routine experience in Lyon for the screening of sphingolipidoses and NPC

Fabry disease (X-linked) Mutations on GLA gene Classical forms / Variant forms with specific variant mutations on GLA gene Fabry males Fabry females 900 Gb3 (nmol/mmol creatinine) 800 700 600 500 400 300 200 100 0 MALES Classical form MALES Variant form CONTROLS Heterozygote females Normal α Gal A: 30% cases Normal (U)Gb 3 : 18% cases (classical forms) most of cases (variant forms) 0 5 10 15 20 25 alpha Gal A (µkat/kg) MALES DIAGNOSIS α Gal A activity (always deficient) FEMALES DIAGNOSIS - α Gal A activity - (U) Gb 3 - GLA gene

Fabry disease: Plasma LysoGb 3 Results LYON, France LysoGb 3 (nmol/l) Males Classical form Males Variant form* Females Classical form Females Variant form** Controls N = 77 n = 15 n = 10 n = 44 N = 8 N = 228 Mean 91 5.8 5.7 1.4 < 0.6 (99 th perc.) Range 30-173 1.8-11.1 1.1-31.2 0.3-4 0-1.1 Normal in 4/8 cases * Variant GLA mutations in males p.ile232thr p.met296val p.arg301gln p.arg363his p.asn215ser (n=2) p.asn215ser p.ile198thr p.phe113leu (n=3) ** Variant GLA mutations in females p.arg363his (n=3) p.asn215ser p.phe113leu (n=4)

(P) LysoGb 3 (nmol/l) 200 180 160 140 120 100 80 60 40 20 0 Results LYON, France (P) LysoGb 3 (nmol/l) 35 30 25 20 15 10 5 Fabry disease: Correlation (U)Gb 3 / (P) LysoGb 3 0 500 1000 1500 2000 2500 (U) Gb3 (nmol/mmol creat.) MALES Témoins Controls (n (n=44) = 44) Fabry Male Hommes classical (classique, form (n=12) n = 10) Fabry Male Hommes variant (variant, form (n=8) n = 8) FEMALES Témoins Controls (n (n=44) = 44) Femmes Female classiques classical form (n = (n=38) 38) Fabry Female Femmes variant (variant, form (n=2) n = 2) (P) LysoGb 3 (nmol/l) 12 10 8 6 4 2 0 0 50 100 150 200 Controls Plasma LysoGb 3 is a much more sensitive 14 biomarker of screening than urinary 12 Gb 3 (P) LysoGb 3 (nmol/l) 10 8 6 4 2 (U) Gb 3 (nmol/mmol creat.) 0 0 100 200 300 400 (U) Gb 3 (nmol/mmol creat.) 0 Controls 0 50 100 150 (U) Gb 3 (nmol/mmol creat.)

Gaucher disease: LysoHexCer Results LYON, France LysoHexCer (nmol/l) GAUCHER Saposin C deficiency * KRABBE (infantile) KRABBE (juvenile / adult) Controls n = 27 n = 1 n = 8 n = 4 n = 228 Mean 160 76 13 1.2 < 3.3 (99 th perc.) Range 5-427 - 9-22 0.9 1.4 0.1-3.5 * Treated by SRT Highly elevated in GD, large range of values, can be very moderately elevated in some cases Elevated in case of saposin C deficiency In GD: Correlation with chitotriosidase and CCL18 ( = indirect and non specific biomarkers)

Gaucher disease: LysoHexCer/GBA Genotype correlation Biological variability of LysoHexCer levels +++ for a same genotype Results of the French cohort, untreated Gaucher patients Cut-off (99 th. p) GBA mutations Lower LysoHexCer values in patients homozygous for N370S mutation of GBA gene

Gaucher disease: LysoHexCer in Amniotic Fluid (AF) *** In case of non-immune hydrops fœtalis (NIHF) New powerful biomarker in AF of fetal GD LysoHexCer (nmol/l) Pettazzoni M et al. PLoS One. 2017 Controls Gaucher AF NIHF Controls AF n = 15 n = 5 n = 64 Mean < 0.7 460 *** < 0.7 Range 68-996 *** p<0.001

Krabbe disease: LysoHexCer Results LYON, France LysoHexCer (nmol/l) GAUCHER KRABBE (infantile) KRABBE (juvenile / adult) Controls n = 27 n = 8 n = 4 n = 228 Mean 160 13 1.2 < 3.3 (99 th perc.) Range 5-427 9-22 0.9 1.4 0.1-3.5 LysoHexCer = Psychosine Moderate increase in infantile KD In normal range in juvenile and adult forms Saposin A deficiency? To be evaluated

Niemann-Pick diseases Niemann-Pick type A/B Sphingomyelinase deficiency Tedious enzyme activity measurement Niemann-Pick type C Lysosomal cholesterol trafficking and lipid storage disorder Filipin staining test on cultured fibroblasts Genetic testing NPC1 or NPC2 gene Chitotriosidase Moderate but inconstant elevation 6 % of patients are homozygous for 24 bp duplication in CHIT1 gene and 30 40 % heterozygotes Oxysterols plasma (2010) Cholestane-3β,5α,6β-triol (and 7-ketocholesterol) MS/MS LysoSM (2014) LysoSM «509» = LSM + 44 (2015)

NPA/B and NPC: Lysosphingomyelins LysoSM and LysoSM509 in plasma Results LYON, France LysoSM (nmol/l) LysoSM509 (MoM) NPA/B NPC* < 10 y NPC* > 10 y Controls n = 24 n = 26 N = 29 n = 228 Mean 16.5 0.7 1.0 < 1.9 (99 th perc.) Range 2.4-69.6 0.2 2.1 0.2 3.5 0.1-2.0 Mean 214 149 63 < 4.3 (99 th perc.) Range 98-515 34-390 7-144 0-9.1 * Some patients are treated

GM1 & GM2 gangliosidoses: LysoGM1/GM2 in plasma IS: d17 Sphingosine-1P LysoGM1 LysoGM2 Controls Controls IS GM1 gangliosidosis LysoGM1 1278.6>290.1 n = 5/6 GM2 gangliosidosis LysoGM2 1116.6>290.1 Sandhoff 7/9 Tay-Sachs 3/4 In spite of poor recovery results (lack of specific IS) Good specificity Not detected in controls Abnormal presence of lysogm1 in GM1 gangliosidosis (5/6 cases) and lysogm2 in Sandhoff diseases (7/9 cases) in Tay-Sachs diseases (3/4 cases) Lack of sensitivity for mild and adult forms

Conclusion Our LysoSLs multiplex assay: 6 lysosls including LysoGM1 and LysoGM2 Efficient and rapid biochemical screening tool Small plasma sample volume (pediatrics +++) Better screening of FD males with variant form, and females More sensitive screening of NPC than oxysterols Differential screening of NPC, NPA/B and GD in the same run Specific screening of fetal GD Useful for the monitoring of patients (FD, GD) Positive results to be confirmed by enzymatic measurement, and molecular studies Adults and mild phenotype: possibly normal screening Other analogues of LysoSL (mass variation on the sphingosine moiety): could be interesting biomarkers to be evaluated? (C Auray-Blais, Sherbrooke, Canada)

Acknowledgments Unité des Maladies Héréditaires du Métabolisme Centre de Biologie et de Pathologie Est Monique Piraud Roseline Froissart Cécile Pagan David Cheillan Séverine Ruet Christine Vianey-Saban Marie-T. Vanier Philippe Latour Alain Fouilhoux Nathalie Guffon Dominique P Germain Thierry Levade Michèle Trauchessec Florine Coeurdray Virginie Gaucher magali.pettazzoni@chu-lyon.fr