Sites of sequence variability in Epstein-Barr virus DNA from

Size: px
Start display at page:

Download "Sites of sequence variability in Epstein-Barr virus DNA from"

Transcription

1 Proc. Nati. Acad. Sci. USA Vol. 76, No. 6, pp June 1979 C(ell Biology Sites of sequence variability in Epstein-Barr virus DNA from different sources (intracellular virus DNA/Burkitt lyntphoma/nasopharyngeal carcinoma/infectious mononucleosis) LARS RYMO, TOMAS LINDAHL, AND ALICE ADAMS Departments of Clinical Chemistry, Medical Chemistry, and Medical Microbiology, Cothenbhrg University' Communicated by George Klein, March 1, Gothenburg, Sveden ABSTRACT The intracellular Epstein-Barr virus (EBV) DNA present in virus-transformed cells was partly purified from 23 cell lines or biopsies of Burkitt lymphoma, nasopharyngeal carcinoma, infectious mononucleosis, or healthy carrier origin. Such DNA was cleaved in fragments (A-K) of molecular weights between 1 X 106 and 30 X 106 with restriction enzyme EcoRI, and these fragments were analyzed by standard methods involving agarose gel electrophoresis, transfer to nitrocellulose filters, and hybridization with radioactive EBV DNA or complementary RNA. Sequence variability among different EBV DNA isolates was largely confined to the A, C, and I fragments. These results are discussed in relation to the linkage map of the EcoRI fragments of EBV DNA. The EcoRI cleavage pattern of intracellular viral DNA of an EBV-like virus from baboon cells, Herpesvirus papio, was entirely different from that of human EBV isolates. Strain differences in tumor viruses have often been characterized by restriction enzyme cleavage of viral DNA followed by determinations of the sizes of the DNA fragments by gel electrophoresis (1). Since the Epstein-Barr virus (EBV) is associated with several distinctly different forms of human disease, it has been of interest to estimate the degree of strain variability of this virus. No useful experimental lytic system is available for production of EBV particles from many different sources. A small minority of virus-transformed cell lines spontaneously produce virus, and comparisons among Epstein-Barr virion DNAs have been limited to two or three different isolates (2-6). Human cell lines and tumor biopsies that contain EBV DNA without releasing virions nevertheless carry multiple copies of EBV DNA molecules, with both nonintegrated circular forms of viral genome length and sequence complexity and integrated viral DNA sequences being present (7, 8). In at least some cases, the virus may be rescued from such nonproducer cell lines by fusion with EBV-negative cells and induction (9). In the present study, nonintegrated EBV DNA molecules have been partly purified from lysates of cells originating from Burkitt lymphomas, poorly differentiated nasopharyngeal carcinomas, patients with infectious mononucleosis, or healthy carriers. This DNA has been fragmented and analyzed by standard methods involving cleavage by EcoRI enzyme, separation of the DNA fragments by gel electrophoresis, transfer to membrane filters, hybridization with radioactive EBV DNA or complementary RNA (crna), and fluorography (10-13). MATERIALS AND METHODS Cell Lines and Tumor Biopsies. Lymphoid cell lines were grown in stationary suspension culture. Cells from Kenyan tumor biopsies and tumor cells grown in nude mice were gifts from George Klein and were treated as described (14). Three Burkitt lymphoma biopsies (J.N., R.W., and A.G.) and two biopsies of poorly differentiated nasopharyngeal carcinoma (K.C. and L.L.) were investigated. The following cells known to contain circular nonintegrated EBV DNA were studied: the African Burkitt lymphoma lines Raji and Rael (8); the American Burkitt lymphoma line SU-AmB-2 (15); the nasopharyngeal carcinoma epithelial cell isolate M.M. grown in nude mice (14); the nasopharvngeal carcinoma lymphoblastoid cell line LY-28 (16); infectious mononucleosis lines Salomon, TW16, TW20, JHTC-33, IM-198, and cb35b1 (17); and lines F-265, NC-37, U-303 L, and SK-Li from individuals without EBV-associated disease (8, 16). In addition, the Kenyan Burkitt lymphoma line Daudi (18), the cbc29 line obtained by transformation of cord blood leukocytes with the B95-8 strain of EBV, and the EBVnegative lymphoma line U-698 (19) were investigated. Abongo is a Kenyan Burkitt lymphoma line grown in nude mice. The Herpesuirus papio-transformed baboon lymphoid cell line 18-C contains circular nonintegrated viral DNA of viral genome length* and was also included in the study. Partial Purification of Nonintegrated EBV DNA. High molecular weight DNA, about 10-fold enriched in EBV DNA, was prepared from cells as described (20). Briefly, cell lysates were obtained with Sarkosyl/EDTA, treated with Pronase, and fractionated by neutral CsCl density gradient centrifugation. DNA fractions of density g/cm3 were pooled, dialyzed free from Cs(-Il, and concentrated by ethanol precipitation. EB3V DNA preparations from virions released by B95-8 and P3HR-1 cells were made as described (20). Radioactive EBV DNA and crna. EBV DNA was labeled with 125I-labeled dctp (1251-dCTP) (21) to specific activities of 1-2 X 108 cpm/,ug by the nick-translation reaction of Escherichia coli DNA polymerase according to a procedure based on that of Rigby et al. (22) and Maniatis et al. (23). Carrier-free 1251-dCTP (approximately 109 cpm) dissolved in 50% ethanol was dried under reduced pressure and redissolved in 100 pl of 50mM Tris-HCI, ph 7.5/7 mm MgCI2/1 mm dithiothreitol/10 gm dctp/20 jm datp/20 pm dgtp/20 tm TTP. EB3V DNA (1 jig), 10 pg of DNase I (electrophoretically purified, Worthington), and 30 units of E. coli DNA polymerase (Boehringer Mannheim) were added, and the reaction mixture was incubated at 14WC for 3 hr. About 40% of the 1251 radioactivity became incorporated into trichloroacetic acid-precipitable material. The reaction wvas stopped by the addition of 100 y l of 0.1 M EDTA and the solution was extracted with equal volumes of phenol/cresol/water, 100:14:1 1 (containing 0.18 g of 8-hydroxyquinoline per liter), and chloroforin/isoamyl alcohol (100:1). The aqueous phase was chromatographed on a Sephadex C-50 column (0.5 X 10 cm) equilibrated with 10 The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisemnent ' in accordance with 18 U. S. C solely to indicate this fact Abbreviations: EBV, Epstein-Barr virus; crna, complementary RNA. * 1.. Falk, 1'. Lindahl, G. Bjursell & G,. Klein, Int. J. Cancer, in press.

2 Cell Biology: Rymo et al. mm Tris-HC'l, ph 7.5/1 mm EDTA. The excluded fractions were pooled, heated to 1000C for 5 min, divided into portions, and stored frozen at -20'C. EBV crna was synthesized with P3HR-1 EBV DNA labeled with la-32plctp (New England Nuclear) and E. coli RNA polymerase (a gift from K. Carlsson, University of Tromso, Norway) as described (20). Analysis of Restriction Enzyme Cleavage Patterns. Partly purified EBV DNA (about 10 jig of total DNA containing ng of EBV DNA) in 200 Mil of 50 mm Tris-HCI, ph 7.5/100 mm NaCII/10 mm MgCl2/1 mm dithiothreitol was incubated for 2 hr at 370C with endonuclease EcoRI (Boehringer Mannheim). The amount of enzyme used was at least 5 times the amount needed for complete hydrolysis of an equivalent amount of adenovirus 2 DNA under the same conditions. The reaction was stopped by addition of 10,ul of 0.5 M EDTA, and the DNA was precipitated with ethanol at -20'C. The precipitate was dissolved in 50,ul of 20% glycerol/10 mm Tris-HCI, ph 7.5/0.1% sodium dodecyl sulfate/0.05% bromophenol blue, and DNA samples of 5-15 Mil were loaded into 5 X 2 X 4 mm slots in 26 X 16 X 0.5 cm horizontal 0.35% agarose (Litex HSC, Glostrup, Denmark) slab gels. The gels were run for 18 hr at 1.3 V/cm and 60C, using a buffer system containiig 50 mm Tris acetate (ph 7.9), 20 mm sodium acetate, 1 mm EDTA, and 0.5 jig of ethidium bromide per ml. B95-8 EBV DNA was included as a reference in all gels. The DNA in the gels was then denatured in situ and transferred to nitrocellulose sheets (BA85, Schleicher & Schuell) as described by Southern (10). After the filters were washed, dried, and baked at 80'"C for 4 hr, they were inserted into polyethylene bags and preincubated with Denhardt's solution (0.02% Ficoll/0.02% polyvinylpyrrolidone/0.02% bovine serum albumin) in quadruple strength NaCl/citrate (NaCl/citrate contains 0.15 M NaCl and 15 mm sodium citrate, ph 7.0)/0.1% sodium dodecyl stulfate/50 jig of sonicated calf thymus DNA per ml at 670C for 6 hr. Hybridization was carried out at 670C for 40 hr in 6 ml of Denhardt's solution containing quadruple strength NaCl/ citrate, 0.1% sodium dodecyl sulfate, 50 jig of sonicated DNA per ml, 5 mm potassium iodide, and 0.1 jig of '251-labeled nick-translated B95-8 EBV DNA. The membranes were rinsed in 2-fold concentrated NaCl/citrate and washed at 670C in the hybridization buffer for 3 hr, in 2-fold concentrated Na(CI/citrate/1% sodium dodecyl sulfate for 30 min, in NaCl/citrate for 30 min, in half strength NaCl/citrate for 30 min, and in quarter strength NaCII/citrate for 30 min. They were then air-dried and subjected to fluorography at -700C with Kodak X-Omat R film and Agfa Gevaert M.R.600 intensifying screens. Several different exposure times were needed to clearly discern both large and small fragments. Membranes to be hybridized with crna were not pretreated as described above for DNA/ DNA hybridization. Hybridization was carried out at 67' C for 40 hr in 6 ml of a solution containing quadruple strength Na(1/citrate. 0.1% sodium dodecyl sulfate, 0.1 mg of yeast UNA per tni, and 0.1 pg of 32P-labeled P3HRI-1 E13V crna. Th'le membranes were washed in 2-fold concentrated NaCl/ citrate at 370C for 2 hr, and then again at 67 'C for I hr, treated wvith 20 pg of RNase A per ml of 2-fold concentrated NaCl/ citrate at 37C' for 1 hr, arid washed with NaCI/citrate for several hours at room temperature. They were then dried arid fluorographed as described above. RESULTS Cleavage patterns analyzed with different EBV probes EBV DNA from virions released by B95-8 cells is cleaved byi EcoRl into 12 fragments (A-K) of Mrs betwveemi 30 X 106 and Proc. Natl. Acad. Sci. USA 76 (1979) X 106, and the total Mr of these fragments is close to 100 X 106, the Mr of intact EBV DNA (3, 5). Similar cleavage patterns to those of virion DNA were observed here with 23 different isolates of intracellular EBV DNA by the Southern blotting technique (Figs. 1 and 2). Linear EBV DNA is cleaved by EcoRI at one end adjacent to a short terminal redundancy (3), so circular viral DNA molecules, which are the predominant intracellular form studied here, would be expected to generate cleavage patterns similar to linear virion DNA. P3HR-1 virion DNA generated a more complex pattern (Fig. 2), in agreement with previous observations of heterogeneity within this strain (4, 5). It would appear that P3HR-1 is unique in this regard among the isolates investigated here. Two of the EcoRI fragments of EBV DNA, G1 and G2, are of very similar molecular weight and were not separated from each other by gel electrophoresis, and bands D and E were not well resolved in analyses by the blotting technique. With these minor reservations, all EBV DNA fragments in EcoRI digests of pure EBV DNA detected by optical methods were also detected here with either radioactive nick-translated B95-8 EBV DNA (Fig. 1) or EBV crna (Fig. 2) from the P3HR-1 strain as hybridization probes. No band was ever detected that could be visualized with only one probe. These observations strongly indicate that the crna is an adequate probe representative of most (or all) EBV DNA sequences, although abundance differences among various sequences exist. Thus, the smaller I and J bands were consistently stronger than the H band when crna was used as the probe (Fig. 2) A- B- *W C DE - F G H s w w~ Jo- * K v. UP Fl(;. 1. E(oRl cleavage patterns of partly purified, nonintegrated circular EBV DNA fromn virus-transf)rmied cells. The DNA fragments were separated by electrophoresis in 0.35% agarose gels, denatured iln situ, transferred to nitrocellulose membrane filters, incubated with EWV '251-labeled I)NA (1'2'l-DNA). and analyzed by fluorography. Partly pqrified intracellular EBV DNA (2 pg) was applied to each slot. Slots: 1, B95-8 virion DNA (100 ng); 2, B95-8 virion DNA (10 ng); 3, LL. nasop)haryngeal carcinoma tumor biopsy; 4, K.C. nasopharyngeal carcinoma tumor biopsy; 5, A.0. Burkitt lymphoma tumor biopsy; 6, R.W. Burkitt lymphomia tumor biopsy; 7, B95-8 virion DNA (10 ng): 8,.JH'l'C-33 (infectious mononucleosis cell line); 9. Salomon (infectious mononucleosis cell line); 10, (2 Pg of DNA from an EBV-negative lymphoma): 11, virion DNA (10 ng); 12. blank; 13..I.N. Burkitt lymphoma tumor l)iopsy; 14, Rael (Burkitt lymphoma line); 15. B95-8 virion D)NA (10 ng).

3 2796 Cell Biology: Rymo et al. Proc. Natl. Acad. Sci. USA 76 (1979) U( CO ^ 4g A.. t.i~ D E *,a 4w -.w 4w t" 0 io. 0,ft 0 Go F-- J "4. ~~~~~~~~~~~~~~~~~~~I I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~.- Ki- A E3 FI(. 2. EcoRI cleavage patterns of intracellular EBV DNA. Conditions were as in Fig. 1, except that EBV [32P~cRNA was used as the probe instead of 1251-D)NA. In the left half of the gel, about 3 pg of total DNA was applied to each slot, whereas in the right half, 1.5,ug of DNA of the same material was analyzed. Slots: 1 and 9, P3HR-1 virion DNA (10 ng); 2, 10, and 17, B95-8 virion DNA (10 ng); 3 and 11, Raji (Burkitt lymphoma line); 4 and 12, TW16 (infectious mononucleosis line); 5 and 13, TrW20 (infectious mononucleosis line); 6 and 14, NC-37 (line from carrier without lymphoproliferative disease); 7 and 15, cbc 29 (cord blood cells immortalized with B95-8 EBV); 8 and 16, StT-AmB-2 (American Burkitt lymphoma line). Strain differences By comparison of the EcoRI cleavage patterns of many different EBV DNA isolates, it became clear that the sizes of certain fragments show considerable variation, whereas other fragments appear highly invariant. In the latter group, the F, H, and J fragments had the same size in all isolates, and the (D+E) and (G1+G2) bands were also always present. The B band was of the same size in 24 of 25 isolates, the exception being EBV DNA from LY-28 cells (Fig. 3). The LY-28 line is derived from a Hong Kong nasopharyngeal carcinoma biopsy (24) and is the only Asian EBV strain studied here. In material from LY-28, the B fragment was missing but two additional bands were instead found close to the smaller D band, suggesting that the B fragment in LY-28 EBV DNA contains an extra EcoRl cleavage site. A similar sequence alteration was not found in EBV DNA of African nasopharyngeal carcinoma isolates (Fig. 1). The largest fragment, A, which is mainly comprised of multiple copies of a repeated fragment of Mr 2 X 106 (5) varied markedly in size among different isolates. B95-8 virion DNA yielded all A fragment of Mr about 29 X 106 containing about 11 copies of the reiterated sequence. A fragments of similar size were found in EBV DNA from Raji, Daudi, Abongo, Su- AmB-2, Mbane, LY-28, NC-37, F-265, 8&3-1, and U-303L cells. Smaller A fragments of MrS between 23 X 106 and 26 X 106 were observed with material from all five tumor biopsies investigated as well as the Rael, IM-198, Salomon, TW16, TW20, JHTC-33, cb35l31, cbc29, and SK-LI lines. A small A fragment of this type was also observed for the dominating sequence of P3HR-1 virion DNA (Fig. 2). Many differences are found in the C fragment region, and this section of the EBV DNA sequence shows the greatest variability among different isolates. The C fragment has a Mr of about 11.4 X 106 in the B95-8 virion DNA and in material from the cb,35bl and SK-LI lines and the A.O. and K.C. tumor biopsies, but it may instead be entirely absent (TW16, TW20, 883-L), present as an anomalously small fragment of Af r about.11 D FE 10 W. G Fic.. 3. EcoRI cleavage patterns of EBV DNA from IM-198 (infectious mononucleosis) and LY-28 (nasopharyngeal carcinoma). 9.7 X 106 (L.L. tumor biopsy, Mbane, Salomon, cbc29), or present as a large fragment of Mr about 13.0 X 106 (tumor biopsy R.W., LY-28, IM-198, JHTC-33, U-303L). Moreover, several EBV isolates show two bands between the B and (D+E) bands, apparently corresponding to two of the sizes found with individual C fragments. Thus, EBV DNA from the J.N. tumor biopsy, Raji, F-265, and NC-37 yielded two bands of Mr about 13.0 X 106 and 11.4 X 106, whereas material from Rael, Daudi, Abongo, and SU-AmB-2 yielded two bands of Mr 13.0 X 106 and 9.7 X 106. No EBV DNA isolate gave two bands of Mr 11.4 X 106 and 9.7 X 106, however. We note that in one batch of virion DNA from B95-8 cells, two C, bands, apparently in molar amounts, occurred with a larger component Mr 13.0 X 106 present in addition to the C fragment normally found (Fig. 1). This extra band had been observed in two earlier B95-8 EBV DNA preparations as a submolar fragment and was not a result of partial cleavage of the EBV DNA with the EcoRI enzyme, because it was present after digestion for various times with several concentrations of different EcoRI preparations. Moreover, no C band at all was observed with EBV DNA from 883-L cells, although the B95-8 EBV strain is derived from 883-1L (25). A minority of the EBV DNA isolates were missing the I band, whereas the smaller J band could be clearly visualized in the same digests. Among 25 different isolates, the I fragment was not found in EBV D)NA from the A.O. tumor biopsy. Mbane, R.!!W..

4 Cell Biology: IM-198, JHTC-33, Salomon, SK-L1, and U-303L. Although some of the lines used in this study produce small quantities of EBV particles, none of the lines missing the I fragment produce detectable amounts of virions. Finally, a few EBV DNA isolates showed an extra band between the F and G bands. The DNA/DNA hybridization data indicated that this band was present in submolar amounts, and its presence suggests minor heterogeneity within the particular EBV DNA isolate. It was not detected in any of the EBV DNA preparations from tumor biopsies, but it was reproducibly observed in material from the Raji, Daudi, Rael, Mbane, LY-28, NC-37, and F-265 lines. DNA sequence differences between EBV and an EBVlike virus from baboons Baboons have a herpes virus carried in B lymphocytes which has been termed Herpesvirus papio, and DNA from H. papio contains sequences cross-hybridizing with human EBV (26). Circular nonintegrated H. papio DNA has been found in a virus-transformed baboon lymphoid cell line, 18-C,* and partly purified H. papio DNA from this line was cleaved with EcoRI and analyzed with an EBV DNA probe (Fig. 4). A heavy band was found between the B and C' bands of the B95-8 EBV DNA reference, and five weaker bands between the A and B, E and F, F and G, and J and K bands were also detected. There was no similarity between the band patterns generated from any of the EBV DNA isolates and H. papio DNA, suggesting that H. papio is a distinct virus only distantly related to EBV. A- c G H- RN-mo et al. ILO Ao lb Proc. Natl. Acad. Sci. USA 76 (1979) 2797 DISCUSSION In this comparison between the EcoRI fragment patterns of 23 different isolates of circular EBV DNA molecules from cells and 2 virion DNAs, several types of variation confined to certain regions of the virus genome were detected. In particular, the A and C' fragments were highly variable in size, whereas the C' or I fragments were missing in a minority of the isolates without appearance of new detectable bands. On the other hand, within the sensitivity of the technique used, the B, (D+E), F, (Gt+G2), H, and J fragments appeared to be generally conserved. A linkage map of the EcoRI fragments of B95-8 EBV DNA has recently become available (3). This linkage map is shown in Fig. 5. in which the repeated sequences within the A fragment and the terminal redundant regions are also indicated. The arrows under the map show the two locations of sequence heterogeneity observed between B95-8 EBV DNA and the major component in P3HR-1 EBV DNA by partial denaturation mapping (4). These two DNAs differ with regard to the sizes of the isolated EcoRI A and C fragments, in apparent agreement with the partial denaturation mapping data. In the many additional EBV DNA isolates investigated here, size differences in the A and (C fragments remain the most common variations. 'T'he blotting method used in this work only allows a semiquantitative estimate of the abundance of each fragment, so luplications of certain parts of the virus genome to preserve its length after deletion of sequences would be difficult to detect. For example it has been shown by optical methods that P3HR-1 EBV DNA has two copies of the I-J region but fewer repeat sequences in the A region than B95-8 EBV DNA (5). The present method would hardly detect the former alteration while registering the latter one as a change in the size of the A band. Further, the loss of one of the overlapping D and E bands would not be detected. For such reasons, it is not possible at this point to correlate differences between the cleavage patterns of various isolates with a total genomne size difference. Several lymphoid cell lines transformed with B95-8 virus in vitro contain EBV DNA circles of 10-15% reduced size (17, 27). These molecules do not lack any EcoRI fragment entirely but have a shorter A fragment thams the virion DNA used for immortalization. It is not known if this is the whole explanation of the DNA circle size variation in this case. Although the differences in size of the A fragment among isolates from many sources may well depend on a variation in the number of repeat sequences within this fragmnent. the marked heterogeneity of the C fragment is more (lifficult to rationalize. A more limited sequence repeat region could perhaps occur also within this fragment. Alternatively, although isolated EBV DNA appears free from detectable amounts of cellular DNA sequences (2), the possibility that a sniall, variable stretch of host DNA may be included in the C fragnient cannot presently be ruled out. J Il 11 A G G F K B E H 11 II C D a ~~~~~~ = J - FIG. 4. EcoRI cleavage patterns of human EBV DNA (B95-8 virion DNA) and Herpesuirus papito )NA (from 18-( baboon cell line) I I I I I I I I I I I I x106 FIu;. 5. Linkage map of 'E(olI fragments of B95-8 EBV DNA (3). The sites of endonuclease cleavage are indicated by perpendicular lines above the open bar denioting the linear B95-8 DNA molecule. The lines within the open bar indicate the repeated sequences present in the A fragment and the terminal redundant regions. The lower scale denotes size in terms of molecular weight of double-stranded I)NA.

5 2798 Cell Biology: Rymo et al. The different EBV DNA isolates investigated here were largely similar, and in most cases only one or two differences were detected among individual cleavage patterns. In four separate cases, the patterns were even indistinguishable. Interestingly, the American Burkitt lymphoma line SU-AmB-2 yielded EBV DNA circles with the same EcoRI cleavage pattern as EBV DNA from the African Burkitt lymphoma Abongo, propagated in nude mice. These EBV DNA preparations were made and analyzed at different times, precluding the possibility of crosscontamination. The structural similarity between intracellular EBV DNA from biopsies and cell lines has been noted in a previous study on a smaller number of isolates by similar techniques (13). Because no attempt was made to purify the nonintegrated EBV DNA in that work and the high agarose concentration in the gels precluded an adequate size estimation of the largest DNA fragments, it is difficult to compare those results with the present ones in more detail. It has often been speculated that viral strain differences, in addition to cellular immunologic and genetic factors may be important for the disparate interactions of EBV with its host. However, at the present level of resolution, no obvious disease-related differences could be discerned among EBV DNA isolates of either tumor or nontumor origin. While the present approach essentially rules out that highly defective EBV strains are associated with certain diseases, more subtle sequence differences within the EBV genome may well still be of critical biological importance. Studies of viral transcription products in different types of transformed cells or direct sequencing of certain interesting regions of EBV DNA isolates may provide more decisive answers with regard to the eventual importance of EBV strain variability. Note Added in Proof. EBV DNA from the widely used lines Raji, NC-37, and F-265 show identical EcoRI cleavage patterns in this paper. Additional studies have shown that the HindIll cleavage patterns of these EBV DNAs also are identical, and isozyme patterns and other properties of the original isolates of these lines strongly indicate that NC-37 and F-265 are sublines of Raji rather than lines established from normal carriers. Thus, the present data for the EBV DNA from NC-37 and F-265 should not be regarded as representative of material from normal cells (unpublished results). We thank George Klein and Goran Magnusson for discussions and Jane Ohnander, Berit Sperens, and Loraine Karran for technical assistance. This work was supported by U.S. Public Health Service Contract NO1-CP within the Virus Cancer Program of the National Cancer Institute and by the Swedish Cancer Society. Proc. Natl. Acad. Sci. USA 76 (1979) 1. Nathans, D. & Danna, K. J. (1972) J. Mol. Biol. 64, Raab-Traub, N., Pritchett, R. & Kieff, E. (1978) J. Virol. 27, Given, D. & Kieff, E. (1978) J. Virol. 28, Delius, H. & Bornkamm, G. W. (1978) J. Virol. 27, Rymo, L. & Forsblom, S. (1978) Nucleic Acids Res. 5, Sugden, B., Summers, W. C. & Klein, G. (1976) J. Virol. 18, Nonoyama, M. & Pagano, J. S. (1973) Nature (London) 242, Kaschka-Dierich, C., Falk, L., Bjursell, G., Adams, A. & Lindahl, T. (1977) Int. J. Cancer 20, Glaser, R. & Nonoyama, M. (1974) J. Virol. 14, Southern, E. M. (1975) J. Mol. Biol. 98, Ketner, G. & Kelly, T. J. (1976) Proc. Natl. Acad. Sci. USA 73, Botchan, M., Topp, W. & Sambrook, J. (1976) Cell 9, Sugden, B. (1977) Proc. Natl. Acad. Sci. USA 74, Kaschka-Dierich, C., Adams, A., Lindahl, T., Bornkamm, G. W., Bjursell, G., Klein, G., Giovanella, B. C. & Singh, S. (1976) Nature (London) 260, Koliais, S., Bjursell, G., Adams, A., Lindahl, T. & Klein, G. (1978) J. Natl. Cancer Inst. 60, Adams, A. (1979) in The Epstein-Barr Virus, eds. Epstein, M. A. & Achong, Y. M. (Springer, Berlin), in press. 17. Adams, A., Bjursell, G., Gussander, E., Koliais, S., Falk, L. & Lindahl, T. (1979) J. Virol. 29, Klein, G. & Dombos, L. (1973) Int. J. Cancer 11, Klein, G., Lindahl, T., Jondal, M., Leibold, W., Menezes, J., Nilsson, K. & Sundstrom, C. (1974) Proc. Natl. Acad. Sci. USA 71, Lindahl, T., Adams, A., Bjursell, G., Bornkamm, G. W., Kaschka-Dierich, C. & Jehn, U. (1976) J. Mol. Biol. 102, Scherberg, N. H. & Refetoff, S. (1974) Biochim. Biophys. Acta 340, Rigby, P. W. J., Dieckmann, M., Rhodes, C. & Berg, P. (1977) J. Mol. Biol. 113, Maniatis, T., Jeffery, A. & Kleid, D. G. (1975) Proc. Natl. Acad. Sci. USA 72, de The, G., Ho, H. C., Kwan, H. C., Desgranges, C. & Favre, M. C. (1970) Int. J. Cancer 6, Miller, G. & Lipman, M. (1973) Proc. Natl. Acad. Sci. USA 70, Falk, L., Deinhardt, F., Nonoyama, M., Wolfe, L. G., Bergholz, C., Lapin, B., Yakovleva, L., Agrba, V., Henle, G. & Henle, W. (1976) Int. J. Cancer 18, Adams, A., Bjursell, G., Kaschka-Dierich, C. & Lindahl, T. (1977) J. Virol. 22,

were isolated from umbilical cord blood.

were isolated from umbilical cord blood. Proc. Nati. Acad. Sci. USA Vol. 77, No. 11, pp. 6851-6855, November 1980 Medical Sciences Nucleic acid spot hybridization: Rapid quantitative screening of lymphoid cell lines for Epstein-Barr viral DNA

More information

EBV DNA in Nonlymphoid Cells of Nasopharyngeal Carcinomas and in a Malignant Lymphoma Obtained after Inoculation of EBV into Cottontop Marmosets

EBV DNA in Nonlymphoid Cells of Nasopharyngeal Carcinomas and in a Malignant Lymphoma Obtained after Inoculation of EBV into Cottontop Marmosets EBV DNA in Nonlymphoid Cells of Nasopharyngeal Carcinomas and in a Malignant Lymphoma Obtained after Inoculation of EBV into Cottontop Marmosets H. WOLF, J. WERNER* AND H. ZUR HAUSEN Institut fur Klinische

More information

Transcription of the Marek's Disease Virus Genome in Virus-

Transcription of the Marek's Disease Virus Genome in Virus- JOURNAL OF VIROLOGY, Apr. 1979, p. 84-89 0022-538X/79/04-0084/06$02.00/0 Vol. 30, No. 1 Transcription of the Marek's Disease Virus Genome in Virus- Induced Tumors SANDRA SILVER, MARY SMITH, AND MEIHAN

More information

hemagglutinin and the neuraminidase genes (RNA/recombinant viruses/polyacrylamide gel electrophoresis/genetics)

hemagglutinin and the neuraminidase genes (RNA/recombinant viruses/polyacrylamide gel electrophoresis/genetics) Proc. Natl. Acad. Sci. USA Vol. 73, No. 6, pp. 242-246, June 976 Microbiology Mapping of the influenza virus genome: Identification of the hemagglutinin and the neuraminidase genes (RNA/recombinant viruses/polyacrylamide

More information

Integration Pattern of Hepatitis B Virus DNA Sequences in Human Hepatoma Cell Lines

Integration Pattern of Hepatitis B Virus DNA Sequences in Human Hepatoma Cell Lines JOURNAL OF VIROLOGY, Jan. 1981, p. 239-243 0022-538X/81/010239-05$02.00/0 Vol. 37, No. 1 Integration Pattern of Hepatitis B Virus DNA Sequences in Human Hepatoma Cell Lines E. MICHAEL TWIST,* H. FRED CLARK,

More information

Yamaguchi University School of Medicine, Kogushi, Ube, Yamaguchi. growth in low serum, anchorage-independent growth in soft

Yamaguchi University School of Medicine, Kogushi, Ube, Yamaguchi. growth in low serum, anchorage-independent growth in soft JOURNAL OF VIROLOGY, Sept. 1994, p. 6069-6073 Vol. 68, No. 9 0022-538X/94/$04.00+0 Copyright 1994, American Society for Microbiology Isolation of Epstein-Barr Virus (EBV)-Negative Cell Clones from the

More information

Gastric Carcinoma with Lymphoid Stroma: Association with Epstein Virus Genome demonstrated by PCR

Gastric Carcinoma with Lymphoid Stroma: Association with Epstein Virus Genome demonstrated by PCR Gastric Carcinoma with Lymphoid Stroma: Association with Epstein Virus Genome demonstrated by PCR Pages with reference to book, From 305 To 307 Irshad N. Soomro,Samina Noorali,Syed Abdul Aziz,Suhail Muzaffar,Shahid

More information

Epstein-Barr Virus: Stimulation By 5 '-Iododeoxy uridine or 5 '-Brom odeoxy uridine in Human Lymphoblastoid Cells F ro m a Rhabdom yosarcom a*

Epstein-Barr Virus: Stimulation By 5 '-Iododeoxy uridine or 5 '-Brom odeoxy uridine in Human Lymphoblastoid Cells F ro m a Rhabdom yosarcom a* A n n a ls o f C l i n i c a l L a b o r a t o r y S c i e n c e, Vol. 3, No. 6 Copyright 1973, Institute for Clinical Science Epstein-Barr Virus: Stimulation By 5 '-Iododeoxy uridine or 5 '-Brom odeoxy

More information

Determination of the temporal pattern and importance of BALF1 expression in Epstein-Barr viral infection

Determination of the temporal pattern and importance of BALF1 expression in Epstein-Barr viral infection Determination of the temporal pattern and importance of BALF1 expression in Epstein-Barr viral infection Melissa Mihelidakis May 6, 2004 7.340 Research Proposal Introduction Apoptosis, or programmed cell

More information

Structural vs. nonstructural proteins

Structural vs. nonstructural proteins Why would you want to study proteins associated with viruses or virus infection? Receptors Mechanism of uncoating How is gene expression carried out, exclusively by viral enzymes? Gene expression phases?

More information

Materials and Methods , The two-hybrid principle.

Materials and Methods , The two-hybrid principle. The enzymatic activity of an unknown protein which cleaves the phosphodiester bond between the tyrosine residue of a viral protein and the 5 terminus of the picornavirus RNA Introduction Every day there

More information

The Prototypical Epstein-Barr Virus-Transformed Lymphoblastoid Cell Line IB4 Is an Unusual Variant Containing Integrated but No Episomal Viral DNA

The Prototypical Epstein-Barr Virus-Transformed Lymphoblastoid Cell Line IB4 Is an Unusual Variant Containing Integrated but No Episomal Viral DNA JOURNAL OF VIROLOGY, JUlY 1991, p. 3958-5963 0022-538X/91/073958-06$02.00/0 Copyright D 1991, American Society for Microbiology Vol. 65, No. 7 The Prototypical Epstein-Barr Virus-Transformed Lymphoblastoid

More information

Activation of Gene Expression by Human Herpes Virus 6

Activation of Gene Expression by Human Herpes Virus 6 Activation of Gene Expression by Human Herpes Virus 6 M. E. M. Campbell and S. McCorkindale 1 Introduction Human herpes virus type 6 (HHV-6) was first detected by Salahuddin et al. [6] and has been isolated

More information

Product Manual. Omni-Array Sense Strand mrna Amplification Kit, 2 ng to 100 ng Version Catalog No.: Reactions

Product Manual. Omni-Array Sense Strand mrna Amplification Kit, 2 ng to 100 ng Version Catalog No.: Reactions Genetic Tools and Reagents Universal mrna amplification, sense strand amplification, antisense amplification, cdna synthesis, micro arrays, gene expression, human, mouse, rat, guinea pig, cloning Omni-Array

More information

Topoisomerase I and II activities are required for Epstein-Barr virus replication

Topoisomerase I and II activities are required for Epstein-Barr virus replication Journal of General Virology (1993), 74, 2263-2268. Printed in Great Britain 2263 Topoisomerase I and II activities are required for Epstein-Barr virus replication Michiko Kawanishi Department of Microbiology,

More information

Nucleic Acids Research

Nucleic Acids Research Volume 9 Number 4 1981 Nucleic Acids Research Vlue9Nme4191NcecAisRsah DNA topoisomerase from Agrobacterium tumefaciens: purification and catalytic properties Jeanne M.LeBon, Sudha Agarwal* and Jack G.Chirikjian

More information

Herpesviruses. Virion. Genome. Genes and proteins. Viruses and hosts. Diseases. Distinctive characteristics

Herpesviruses. Virion. Genome. Genes and proteins. Viruses and hosts. Diseases. Distinctive characteristics Herpesviruses Virion Genome Genes and proteins Viruses and hosts Diseases Distinctive characteristics Virion Enveloped icosahedral capsid (T=16), diameter 125 nm Diameter of enveloped virion 200 nm Capsid

More information

Structure and replication of the genome of the hepatitis 6 virus (viroids/virusoids)

Structure and replication of the genome of the hepatitis 6 virus (viroids/virusoids) Proc. Natl. Acad. Sci. USA Vol. 83, pp. 8774-8778, November 1986 Microbiology Structure and replication of the genome of the hepatitis 6 virus (viroids/virusoids) PEI-JER CHEN*, GANJAM KALPANA*, JANET

More information

Epstein-Barr Virus Polypeptides: Identification of Early Proteins and Their Synthesis and Glycosylation

Epstein-Barr Virus Polypeptides: Identification of Early Proteins and Their Synthesis and Glycosylation JOURNAL OF VIROLOGY, Aug. 1981, p. 651-655 0022-538X/81/080651-05$02.00/0 Vol. 39, No. 2 Epstein-Barr Virus Polypeptides: Identification of Early Proteins and Their Synthesis and Glycosylation ROBERT J.

More information

Native Replication Intermediates of the Yeast 20 S RNA Virus Have a Single-stranded RNA Backbone*

Native Replication Intermediates of the Yeast 20 S RNA Virus Have a Single-stranded RNA Backbone* THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 280, No. 8, Issue of February 25, pp. 7398 7406, 2005 2005 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Native Replication

More information

FEBS 1138 January Paul R. Buckland and Bernard Rees Smith

FEBS 1138 January Paul R. Buckland and Bernard Rees Smith Volume 166, number 1 FEBS 1138 January 1984 A structural comparison receptors by of guinea pig thyroid and fat TSH photoaffinity labelling Paul R. Buckland and Bernard Rees Smith Endocrine Immunology Unit,

More information

Viruses. Instructions fill in the blanks with the appropriate term to have the sentence make sense.

Viruses. Instructions fill in the blanks with the appropriate term to have the sentence make sense. Viruses Part 1 Viral Life Cycle Instructions fill in the blanks with the appropriate term to have the sentence make sense. 1.) A virus is not considered to be a living organism by most scientists. It is

More information

SUPPLEMENTARY MATERIAL

SUPPLEMENTARY MATERIAL SUPPLEMENTARY MATERIAL Purification and biochemical properties of SDS-stable low molecular weight alkaline serine protease from Citrullus Colocynthis Muhammad Bashir Khan, 1,3 Hidayatullah khan, 2 Muhammad

More information

Inhibition of reverse transcriptases by seminalplasmin

Inhibition of reverse transcriptases by seminalplasmin Biochem. J. (1983) 29, 183-188 183 Printed in Great Britain Inhibition of reverse transcriptases by seminalplasmin E. Shyam Prasad REDDY,* M. Ramachandra DAS,* E. Premkumar REDDYt and Pushpa M. BHARGAVA*

More information

Hepatitis B Virus Genemer

Hepatitis B Virus Genemer Product Manual Hepatitis B Virus Genemer Primer Pair for amplification of HBV Viral Specific Fragment Catalog No.: 60-2007-10 Store at 20 o C For research use only. Not for use in diagnostic procedures

More information

Identification of the Virucidal Agent in Wastewater Sludge

Identification of the Virucidal Agent in Wastewater Sludge APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Apr. 1977, p. 860-864 Copyright X) 1977 American Society for Microbiology Vol. 33, No. 4 Printed in U.S.A. Identification of the Virucidal Agent in Wastewater Sludge

More information

(EDTA))." This preparation contained dsrna-1, dsrna-2, SPECIFICITY IN TRANSCRIPTION OF THE REOVIRUS GENOME*

(EDTA)). This preparation contained dsrna-1, dsrna-2, SPECIFICITY IN TRANSCRIPTION OF THE REOVIRUS GENOME* SPECIFICITY IN TRANSCRIPTION OF THE REOVIRUS GENOME* BY Y. WATANABE, L. PREVECt AND A. F. GRAHAM THE WISTAR INSTITUTE OF ANATOMY AND BIOLOGY, PHILADELPHIA, PENNSYLVANIA Communicated by Thomas F. Anderson,

More information

In Vitro and In Vivo Studies with Epstein-Barr

In Vitro and In Vivo Studies with Epstein-Barr A n n a l s o f C l i n i c a l L a b o r a t o r y S c i e n c e, Vol. 3, No. 6 Copyright 1973, Institute for Clinical Science In Vitro and In Vivo Studies with Epstein-Barr Virus (EBV)-------A Review

More information

TRANSPORT OF AMINO ACIDS IN INTACT 3T3 AND SV3T3 CELLS. Binding Activity for Leucine in Membrane Preparations of Ehrlich Ascites Tumor Cells

TRANSPORT OF AMINO ACIDS IN INTACT 3T3 AND SV3T3 CELLS. Binding Activity for Leucine in Membrane Preparations of Ehrlich Ascites Tumor Cells Journal of Supramolecular Structure 4:441 (401)-447 (407) (1976) TRANSPORT OF AMINO ACIDS IN INTACT 3T3 AND SV3T3 CELLS. Binding Activity for Leucine in Membrane Preparations of Ehrlich Ascites Tumor Cells

More information

In the present study, we succeeded in bypassing the membrane. to receptor-negative cells. The procedure is based on our previous

In the present study, we succeeded in bypassing the membrane. to receptor-negative cells. The procedure is based on our previous Proc. Natl. Acad. Scu. USA Vol. 77, No. 9, pp. 5453-5457, September 1980 Medical Sciences Transfer of Epstein-Barr virus receptors to receptor-negative cells permits virus penetration and antigen expression

More information

Antigenic Analysis of Isolated Polypeptides from Visna Virus

Antigenic Analysis of Isolated Polypeptides from Visna Virus INFECTION AND IMMUNITY, June 1976, p. 1728-1732 Copyright 1976 American Society for Microbiology Vol. 13, No. 6 Printed in USA. Antigenic Analysis of Isolated Polypeptides from Visna Virus P. D. MEHTA,*

More information

HIV-1 Virus-like Particle Budding Assay Nathan H Vande Burgt, Luis J Cocka * and Paul Bates

HIV-1 Virus-like Particle Budding Assay Nathan H Vande Burgt, Luis J Cocka * and Paul Bates HIV-1 Virus-like Particle Budding Assay Nathan H Vande Burgt, Luis J Cocka * and Paul Bates Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, USA

More information

Application of μmacs Streptavidin MicroBeads for the analysis of HIV-1 directly from patient plasma

Application of μmacs Streptavidin MicroBeads for the analysis of HIV-1 directly from patient plasma Excerpt from MACS&more Vol 8 1/2004 Application of μmacs Streptavidin MicroBeads for the analysis of HIV-1 directly from patient plasma L. Davis Lupo and Salvatore T. Butera HIV and Retrovirology Branch,

More information

Life Sciences 1A Midterm Exam 2. November 13, 2006

Life Sciences 1A Midterm Exam 2. November 13, 2006 Name: TF: Section Time Life Sciences 1A Midterm Exam 2 November 13, 2006 Please write legibly in the space provided below each question. You may not use calculators on this exam. We prefer that you use

More information

Encapsidation of Sendai Virus Genome RNAs by Purified

Encapsidation of Sendai Virus Genome RNAs by Purified JOURNAL OF VIROLOGY, Mar. 1988, p. 834-838 22-538X/88/3834-5$2./ Copyright C) 1988, American Society for Microbiology Vol. 62, No. 3 Encapsidation of Sendai Virus Genome RNAs by Purified NP Protein during

More information

Supporting Information for:

Supporting Information for: Supporting Information for: Methylerythritol Cyclodiphosphate (MEcPP) in Deoxyxylulose Phosphate Pathway: Synthesis from an Epoxide and Mechanisms Youli Xiao, a Rodney L. Nyland II, b Caren L. Freel Meyers

More information

Variation in the HindlII Restriction Fragments of DNA from the Chinese Tian Tan Strain of Vaccinia Virus

Variation in the HindlII Restriction Fragments of DNA from the Chinese Tian Tan Strain of Vaccinia Virus J. gen. irol. (1985), 66, 1819-1823. Printed in Great Britain 1819 Key words: vaccinia virus~vaccine~restriction Jragrnent variation ariation in the Hindl Restriction Fragments of DNA from the Chinese

More information

Viruses Tomasz Kordula, Ph.D.

Viruses Tomasz Kordula, Ph.D. Viruses Tomasz Kordula, Ph.D. Resources: Alberts et al., Molecular Biology of the Cell, pp. 295, 1330, 1431 1433; Lehninger CD Movie A0002201. Learning Objectives: 1. Understand parasitic life cycle of

More information

Each Other. EDTA), quickly cooled in an ice slurry, and made 3 M KCl. before being bound to the column. Sindbis virus RNAs (49S

Each Other. EDTA), quickly cooled in an ice slurry, and made 3 M KCl. before being bound to the column. Sindbis virus RNAs (49S JOURNAL OF VIROLOGY, Mar. 1986, p. 917-921 0022-538X/86/030917-05$02.00/0 Vol. 57, No. 3 RNA Virus Genomes Hybridize to Cellular rrnas and to Each Other MARCELLA A. McCLURElt* AND JACQUES PERRAULT'2: Department

More information

Chapter13 Characterizing and Classifying Viruses, Viroids, and Prions

Chapter13 Characterizing and Classifying Viruses, Viroids, and Prions Chapter13 Characterizing and Classifying Viruses, Viroids, and Prions 11/20/2017 MDufilho 1 Characteristics of Viruses Viruses Minuscule, acellular, infectious agent having either DNA or RNA Cause infections

More information

Superinfection with Vaccinia Virus

Superinfection with Vaccinia Virus JOURNAL OF VIROLOGY, Aug. 1975, p. 322-329 Copyright 1975 American Society for Microbiology Vol. 16, No. 2 Printed in U.S.A. Abortive Infection of a Rabbit Cornea Cell Line by Vesicular Stomatitis Virus:

More information

Viruses. Rotavirus (causes stomach flu) HIV virus

Viruses. Rotavirus (causes stomach flu) HIV virus Viruses Rotavirus (causes stomach flu) HIV virus What is a virus? A virus is a microscopic, infectious agent that may infect any type of living cell. Viruses must infect living cells in order to make more

More information

VIRUSES AND CANCER Michael Lea

VIRUSES AND CANCER Michael Lea VIRUSES AND CANCER 2010 Michael Lea VIRAL ONCOLOGY - LECTURE OUTLINE 1. Historical Review 2. Viruses Associated with Cancer 3. RNA Tumor Viruses 4. DNA Tumor Viruses HISTORICAL REVIEW Historical Review

More information

Sensitization of the HIV-1-LTR upon Long Term Low Dose Oxidative Stress*

Sensitization of the HIV-1-LTR upon Long Term Low Dose Oxidative Stress* THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 271, No. 36, Issue of September 6, pp. 21798 21802, 1996 1996 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Sensitization

More information

7.012 Quiz 3 Answers

7.012 Quiz 3 Answers MIT Biology Department 7.012: Introductory Biology - Fall 2004 Instructors: Professor Eric Lander, Professor Robert A. Weinberg, Dr. Claudette Gardel Friday 11/12/04 7.012 Quiz 3 Answers A > 85 B 72-84

More information

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14-

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14- 1 Supplemental Figure Legends Figure S1. Mammary tumors of ErbB2 KI mice with 14-3-3σ ablation have elevated ErbB2 transcript levels and cell proliferation (A) PCR primers (arrows) designed to distinguish

More information

CRYSTALLINE PEPSIN V. ISOLATION OF CRYSTALLINE PEPSIN FROM BOVINE GASTRIC JUICE BY JOHN H. NORTHROP

CRYSTALLINE PEPSIN V. ISOLATION OF CRYSTALLINE PEPSIN FROM BOVINE GASTRIC JUICE BY JOHN H. NORTHROP CRYSTALLINE PEPSIN V. ISOLATION OF CRYSTALLINE PEPSIN FROM BOVINE GASTRIC JUICE BY JOHN H. NORTHROP (From the Laboratories of The Rockefeller Institute for Medical Research, Princeton, N. J.) (Accepted

More information

Use of double- stranded DNA mini- circles to characterize the covalent topoisomerase- DNA complex

Use of double- stranded DNA mini- circles to characterize the covalent topoisomerase- DNA complex SUPPLEMENTARY DATA Use of double- stranded DNA mini- circles to characterize the covalent topoisomerase- DNA complex Armêl Millet 1, François Strauss 1 and Emmanuelle Delagoutte 1 1 Structure et Instabilité

More information

Chapter 18. Viral Genetics. AP Biology

Chapter 18. Viral Genetics. AP Biology Chapter 18. Viral Genetics 2003-2004 1 A sense of size Comparing eukaryote bacterium virus 2 What is a virus? Is it alive? DNA or RNA enclosed in a protein coat Viruses are not cells Extremely tiny electron

More information

Supplementary Figures

Supplementary Figures Supplementary Figures Supplementary Figure 1 Minicircle topoisomer generation. a, Generation of supercoiled topoisomers. Minicircles were nicked with the sequence-specific nicking endonuclease, Nb.BbvCI.

More information

Supplementary material: Materials and suppliers

Supplementary material: Materials and suppliers Supplementary material: Materials and suppliers Electrophoresis consumables including tris-glycine, acrylamide, SDS buffer and Coomassie Brilliant Blue G-2 dye (CBB) were purchased from Ameresco (Solon,

More information

2) What is the difference between a non-enveloped virion and an enveloped virion? (4 pts)

2) What is the difference between a non-enveloped virion and an enveloped virion? (4 pts) Micro 260 SFCC Spring 2010 Name: All diagrams and drawings shall be hand drawn (do not photo-copied from a publication then cut and pasted into work sheet). Do not copy other student s answers. Para phase

More information

THE Epstein Barr virus (EBV) is an important factor

THE Epstein Barr virus (EBV) is an important factor Vol. 333 No. 11 EBV IN PREINVASIVE LESIONS RELATED TO NASOPHARYNGEAL CARCINOMA 693 CLONAL PROLIFERATIONS OF CELLS INFECTED WITH EPSTEIN BARR VIRUS IN PREINVASIVE LESIONS RELATED TO NASOPHARYNGEAL CARCINOMA

More information

Introduction retroposon

Introduction retroposon 17.1 - Introduction A retrovirus is an RNA virus able to convert its sequence into DNA by reverse transcription A retroposon (retrotransposon) is a transposon that mobilizes via an RNA form; the DNA element

More information

Reconstitution of Neutral Amino Acid Transport From Partially Purified Membrane Components From Ehrlich Ascites Tumor Cells

Reconstitution of Neutral Amino Acid Transport From Partially Purified Membrane Components From Ehrlich Ascites Tumor Cells Journal of Supramolecular Structure 7:481-487 (1977) Molecular Aspects of Membrane Transport 5 1 1-5 17 Reconstitution of Neutral Amino Acid Transport From Partially Purified Membrane Components From Ehrlich

More information

Collagenase Assay Kit

Collagenase Assay Kit Collagenase Assay Kit Catalog # 31 and 32 For Research Use Only - Not Human or Therapeutic Use INTRODUCTION The collagenases are members of the matrix metalloproteinase (MMP) family and degrade collagen

More information

In vitro DNase I foot printing. In vitro DNase I footprinting was performed as described

In vitro DNase I foot printing. In vitro DNase I footprinting was performed as described Supplemental Methods In vitro DNase I foot printing. In vitro DNase I footprinting was performed as described previously 1 2 using 32P-labeled 211 bp fragment from 3 HS1. Footprinting reaction mixes contained

More information

Site on the RNA of an Avian Sarcoma Virus at Which Primer Is Bound

Site on the RNA of an Avian Sarcoma Virus at Which Primer Is Bound JOURNAL OF VIROLOGY, Sept. 1975, p. 553-558 Copyright 0 1975 American Society for Microbiology Vol. 16, No. 3 Printed in U.SA. Site on the RNA of an Avian Sarcoma Virus at Which Primer Is Bound JOHN M.

More information

Epstein-Barr Virus-Associated Thymidine Kinase

Epstein-Barr Virus-Associated Thymidine Kinase JOURNAL OF VIROLOGY, Apr. 1978, p. 203-208 Vol. 26, No. 1 0022-538X/78/0026-0203$02.00/0 Copyright 1978 American Society for Microbiology Printed in U.S.A. Epstein-Barr Virus-Associated Thymidine Kinase

More information

Viral-Related RNA in Hodgkins' Disease and Other Human Lymphomas

Viral-Related RNA in Hodgkins' Disease and Other Human Lymphomas Proc. Nat. Acad. Soc. USA Vol. 69, No. 7, pp. 1727-1731, July 1972 Viral-Related RNA in Hodgkins' Disease and Other Human Lymphomas (DNA-RNA hybridization/rauscher murine leukemia virus/cancer/neoplasia/tumor)

More information

Isolation and Structural Characterization of Cap-Binding Proteins from Poliovirus-Infected HeLa Cells

Isolation and Structural Characterization of Cap-Binding Proteins from Poliovirus-Infected HeLa Cells JOURNAL OF VIROLOGY, May 1985. p. 515-524 0022-538X/85/050515-10$02.00/0 Copyright C 1985, American Society for Microbiology Vol. 54, No. 2 Isolation and Structural Characterization of Cap-Binding Proteins

More information

Nature Methods: doi: /nmeth Supplementary Figure 1

Nature Methods: doi: /nmeth Supplementary Figure 1 Supplementary Figure 1 Subtiligase-catalyzed ligations with ubiquitin thioesters and 10-mer biotinylated peptides. (a) General scheme for ligations between ubiquitin thioesters and 10-mer, biotinylated

More information

See external label 2 C-8 C Σ=96 tests Cat # EBV-VCA IgA. Cat # EBV -VCA IgA ELISA. ELISA: Enzyme Linked Immunosorbent Assay

See external label 2 C-8 C Σ=96 tests Cat # EBV-VCA IgA. Cat # EBV -VCA IgA ELISA. ELISA: Enzyme Linked Immunosorbent Assay DIAGNOSTIC AUTOMATION, INC. 23961 Craftsman Road, Suite D/E/F, Calabasas, CA 91302 Tel: (818) 591-3030 Fax: (818) 591-8383 onestep@rapidtest.com technicalsupport@rapidtest.com www.rapidtest.com See external

More information

10 mm KCl in a Ti-15 zonal rotor at 35,000 rpm for 16 hr at

10 mm KCl in a Ti-15 zonal rotor at 35,000 rpm for 16 hr at Proc. Nat. Acad. SCi. USA Vol. 68, No. 11, pp. 2752-2756, November 1971 Translation of Exogenous Messenger RNA for Hemoglobin on Reticulocyte and Liver Ribosomes (initiation factors/9s RNA/liver factors/reticulocyte

More information

Chapter 4 Cellular Oncogenes ~ 4.6 -

Chapter 4 Cellular Oncogenes ~ 4.6 - Chapter 4 Cellular Oncogenes - 4.2 ~ 4.6 - Many retroviruses carrying oncogenes have been found in chickens and mice However, attempts undertaken during the 1970s to isolate viruses from most types of

More information

Filter hybridization of electrophoretically separated

Filter hybridization of electrophoretically separated Rapid Publications Immunodetection of Insulin After Transfer from Gels to Nitrocellulose Filters A Method of Analysis in Tissue Extracts KEIJI KAKITA, KEITH O'CONNELL, AND M. ALAN PERMUTT SUMMARY this

More information

EBV Infection and Immunity. Andrew Hislop Institute for Cancer Studies University of Birmingham

EBV Infection and Immunity. Andrew Hislop Institute for Cancer Studies University of Birmingham EBV Infection and Immunity Andrew Hislop Institute for Cancer Studies University of Birmingham EBV Introduction Large ds DNA virus Spread by saliva contact Lifelong infection Predominantly B-lymphotropic

More information

PDF hosted at the Radboud Repository of the Radboud University Nijmegen

PDF hosted at the Radboud Repository of the Radboud University Nijmegen PDF hosted at the Radboud Repository of the Radboud University Nijmegen The following full text is a publisher's version. For additional information about this publication click this link. http://hdl.handle.net/2066/142604

More information

Caution: For Laboratory Use. A product for research purposes only. Eu-W1284 Iodoacetamido Chelate & Europium Standard. Product Number: AD0014

Caution: For Laboratory Use. A product for research purposes only. Eu-W1284 Iodoacetamido Chelate & Europium Standard. Product Number: AD0014 TECHNICAL DATA SHEET Lance Caution: For Laboratory Use. A product for research purposes only. Eu-W1284 Iodoacetamido Chelate & Europium Standard Product Number: AD0014 INTRODUCTION: Iodoacetamido-activated

More information

19/06/2013. Viruses are not organisms (do not belong to any kingdom). Viruses are not made of cells, have no cytoplasm, and no membranes.

19/06/2013. Viruses are not organisms (do not belong to any kingdom). Viruses are not made of cells, have no cytoplasm, and no membranes. VIRUSES Many diseases of plants and animals are caused by bacteria or viruses that invade the body. Bacteria and viruses are NOT similar kinds of micro-organisms. Bacteria are classified as living organisms,

More information

Glycoprotein Synthesis by D-Glucosamine Hydrochloride

Glycoprotein Synthesis by D-Glucosamine Hydrochloride JOURNAL OF VIROLOGY, Apr. 1974, p. 775-779 Copyright 0 1974 American Society for Microbiology Vol. 13, No. 4 Printed in U.S.A. Selective Inhibition of Newcastle Disease Virus-Induced Glycoprotein Synthesis

More information

VIRUSES. 1. Describe the structure of a virus by completing the following chart.

VIRUSES. 1. Describe the structure of a virus by completing the following chart. AP BIOLOGY MOLECULAR GENETICS ACTIVITY #3 NAME DATE HOUR VIRUSES 1. Describe the structure of a virus by completing the following chart. Viral Part Description of Part 2. Some viruses have an envelope

More information

The double-stranded RNA in Trichomonas vaginalis may originate from virus-like particles

The double-stranded RNA in Trichomonas vaginalis may originate from virus-like particles Proc. Nati. Acad. Sci. USA Vol. 83, pp. 7956-7960, October 1986 Microbiology The double-stranded RNA in Trichomonas vaginalis may originate from virus-like particles ALICE L. WANG AND CHING C. WANG Department

More information

Double-Stranded Ribonucleic Acid into Virus Corelike Particles

Double-Stranded Ribonucleic Acid into Virus Corelike Particles JOURNAL OF VIROLOGY, Nov. 197, p. 943-95 Copyright 197 American Society for Microbiology Vol. 1, No. 5 Printed in U.S.A. Incorporation of In Vitro Synthesized Reovirus Double-Stranded Ribonucleic Acid

More information

Structure and Role of the Terminal Repeats of Epstein-Barr Virus in Processing and Packaging of Virion DNA

Structure and Role of the Terminal Repeats of Epstein-Barr Virus in Processing and Packaging of Virion DNA JOURNAL OF VIROLOGY, May 1995, p. 3147 3155 Vol. 69, No. 5 0022-538X/95/$04.00 0 Copyright 1995, American Society for Microbiology Structure and Role of the Terminal Repeats of Epstein-Barr Virus in Processing

More information

Role of Paired Box9 (PAX9) (rs ) and Muscle Segment Homeobox1 (MSX1) (581C>T) Gene Polymorphisms in Tooth Agenesis

Role of Paired Box9 (PAX9) (rs ) and Muscle Segment Homeobox1 (MSX1) (581C>T) Gene Polymorphisms in Tooth Agenesis EC Dental Science Special Issue - 2017 Role of Paired Box9 (PAX9) (rs2073245) and Muscle Segment Homeobox1 (MSX1) (581C>T) Gene Polymorphisms in Tooth Agenesis Research Article Dr. Sonam Sethi 1, Dr. Anmol

More information

Chapter 25. 바이러스 (The Viruses)

Chapter 25. 바이러스 (The Viruses) Chapter 25 바이러스 (The Viruses) Generalized Structure of Viruses 2 2 Virus Classification Classification based on numerous characteristics Nucleic acid type Presence or absence of envelope Capsid symmetry

More information

MORIMOTO LAB BUFFER AND SOLUTION RECIPES

MORIMOTO LAB BUFFER AND SOLUTION RECIPES MORIMOTO LAB BUFFER AND SOLUTION RECIPES 30% Acrylamide 100ml 29g 2X Acyrlamide 1g N,N -methylenebisacrylamide Add ~300ml ddh 2 O. Heat to 37 C to dissolve chemicals. Adjust final volume to 500ml with

More information

Chromatin IP (Isw2) Fix soln: 11% formaldehyde, 0.1 M NaCl, 1 mm EDTA, 50 mm Hepes-KOH ph 7.6. Freshly prepared. Do not store in glass bottles.

Chromatin IP (Isw2) Fix soln: 11% formaldehyde, 0.1 M NaCl, 1 mm EDTA, 50 mm Hepes-KOH ph 7.6. Freshly prepared. Do not store in glass bottles. Chromatin IP (Isw2) 7/01 Toshi last update: 06/15 Reagents Fix soln: 11% formaldehyde, 0.1 M NaCl, 1 mm EDTA, 50 mm Hepes-KOH ph 7.6. Freshly prepared. Do not store in glass bottles. 2.5 M glycine. TBS:

More information

Analysis of small RNAs from Drosophila Schneider cells using the Small RNA assay on the Agilent 2100 bioanalyzer. Application Note

Analysis of small RNAs from Drosophila Schneider cells using the Small RNA assay on the Agilent 2100 bioanalyzer. Application Note Analysis of small RNAs from Drosophila Schneider cells using the Small RNA assay on the Agilent 2100 bioanalyzer Application Note Odile Sismeiro, Jean-Yves Coppée, Christophe Antoniewski, and Hélène Thomassin

More information

Ethylenediaminetetraacetate

Ethylenediaminetetraacetate APPLIED AND ENVIRONMENTAL MICROBIOLOGY, June 1980, p. 1148-1153 0099-2240/80/06-1148/06$02.00/0 Vol. 39, No. 6 Comparative Study on the Mechanisms of Rotavirus Inactivation by Sodium Dodecyl Sulfate and

More information

Characterization of Double-Stranded RNA Satellites Associated with the Trichomonas vaginalis Virus

Characterization of Double-Stranded RNA Satellites Associated with the Trichomonas vaginalis Virus JOURNAL OF VIROLOGY, Nov. 1995, p. 6892 6897 Vol. 69, No. 11 0022-538X/95/$04.00 0 Copyright 1995, American Society for Microbiology Characterization of Double-Stranded RNA Satellites Associated with the

More information

Detection of Antibodies to Epstein-Barr Virus Capsid Antigen

Detection of Antibodies to Epstein-Barr Virus Capsid Antigen JOURNAL OF CLINICAL MICROBIOLOGY, Jan. 1982, p. 69-73 95-1137/82/169-5$2./ Vol. 15, No.1 Detection of Antibodies to Epstein-Barr Virus Capsid Antigen by Immune Adherence Hemagglutination EVELYNE T. LENNETTE,t

More information

Characterization of the DNA-mediated Oxidation of Dps, a Bacterial Ferritin

Characterization of the DNA-mediated Oxidation of Dps, a Bacterial Ferritin SUPPORTING INFORMATION Characterization of the DNA-mediated Oxidation of Dps, a Bacterial Ferritin Anna R. Arnold, Andy Zhou, and Jacqueline K. Barton Division of Chemistry and Chemical Engineering, California

More information

Protein Cleavage Due to Pro-oxidative Activity in Some Spices

Protein Cleavage Due to Pro-oxidative Activity in Some Spices Protein Cleavage Due to Pro-oxidative Activity in Some Spices Sittiwat Lertsiri Department of Biotechnology Faculty of Science, Mahidol University Phayathai, Bangkok 10400 Thailand Kanchana Dumri Department

More information

Human Immunodeficiency Virus-1 (HIV-1) Genemer. Primer Pair for amplification of HIV-1 Specific DNA Fragment

Human Immunodeficiency Virus-1 (HIV-1) Genemer. Primer Pair for amplification of HIV-1 Specific DNA Fragment Product Manual Human Immunodeficiency Virus-1 (HIV-1) Genemer Primer Pair for amplification of HIV-1 Specific DNA Fragment Catalog No.: 60-2002-10 Store at 20 o C For research use only. Not for use in

More information

Estimations of the Molecular Weight of the Influenza Virus Genome

Estimations of the Molecular Weight of the Influenza Virus Genome o r. gem Viral. &97I), H, Io3-Io9 103 Printed in Great Britain Estimations of the Molecular Weight of the Influenza Virus Genome By J. J. SKEHEL National Institute for Medical Research, Mill Hill, London

More information

NEGATIVE POSITIVE. Rev , 06/11. 5 min. Mono Test. For fi ngertip. blood: 1 DROP 1 DROP For serum, whole blood. plasma or. samples.

NEGATIVE POSITIVE. Rev , 06/11. 5 min. Mono Test. For fi ngertip. blood: 1 DROP 1 DROP For serum, whole blood. plasma or. samples. Mono Test 1 2 1 DROP 1 DROP For serum, plasma or whole blood samples in tubes: For fi ngertip blood: 3 4 5 min POSITIVE NEGATIVE Rev. 3078-0, 06/11 Mono Test CLIA Complexity: Waived for Whole Blood Non-Waived

More information

Serologic Evidence that a Herpes-Type Virus is the Etiologic Agent of

Serologic Evidence that a Herpes-Type Virus is the Etiologic Agent of Proc Nat Acad Sci USA Vol 68, No 7, pp 1407-1411, July 1971 Serologic Evidence that a Herpes-Type Virus is the Etiologic Agent of Heterophile-Positive Infectious Mononucleosis (human/rabbit/purified antibodies/antisera/blocking/electron

More information

Identification of NADPH-thioredoxin reductase system

Identification of NADPH-thioredoxin reductase system Proc. Nat. Acad. Sci. USA Vol. 72, No. 11, pp. 4233-4237, November 1975 Biochemistry Identification of NADPH-thioredoxin reductase system in Euglena gracilis* (ribonucleotide reduction) S. MUNAVALLIO,

More information

[4 X 108 plaque-forming units (PFU)/ml] except in the experiment

[4 X 108 plaque-forming units (PFU)/ml] except in the experiment Proc. Nat. Acad. Sci. USA Vol. 69, No. 9, pp. 2404-2409, September 1972 Extensive Symmetrical Transcription of Simian Virus 40 DNA in Virus-Yielding Cells (SV40/monkey cells/actinomycin D/RNase/hybridization)

More information

Blocking by Histones of Accessibility to DNA in Chromatin (DNase/RNA polymerase/dna polymerase)

Blocking by Histones of Accessibility to DNA in Chromatin (DNase/RNA polymerase/dna polymerase) Proc. Nat. Acad. Sci. USA Vol. 69, No. 8, pp. 2115-2119, August 1972 Blocking by Histones of Accessibility to in Chromatin (/RNA polymerase/ polymerase) ALFRED E. MIRSKY AND BERT SILVERMAN The Rockefeller

More information

Cloning DNA sequences from influenza viral RNA segments (cdna strands/cleavage maps/nonstructural protein/matrix protein/hemagglutinin)

Cloning DNA sequences from influenza viral RNA segments (cdna strands/cleavage maps/nonstructural protein/matrix protein/hemagglutinin) Proc. Natl. Acad. Sci. USA Vol. 77, No. 1, pp. 210-214, January 1980 Biochemistry Cloning DNA sequences from influenza viral RNA segments (cdna strands/cleavage maps/nonstructural protein/matrix protein/hemagglutinin)

More information

HPLC '88. Poster Presentation. Isolation of Thymosin B4 from Thymosin Fraction 5 by Reverse Phase HPLC

HPLC '88. Poster Presentation. Isolation of Thymosin B4 from Thymosin Fraction 5 by Reverse Phase HPLC Essentials in HPLC '88 Poster Presentation Isolation of Thymosin B4 from Thymosin Fraction 5 by Reverse Phase HPLC M. Badamchian, M.P. Strickler, M.J. Stone, A.L. Goldstein for Waters.bioresearchThe absolute,

More information

Mammalian Membrane Protein Extraction Kit

Mammalian Membrane Protein Extraction Kit Mammalian Membrane Protein Extraction Kit Catalog number: AR0155 Boster s Mammalian Membrane Protein Extraction Kit is a simple, rapid and reproducible method to prepare cellular protein fractions highly

More information

EBV and Infectious Mononucleosis. Infectious Disease Definitions. Infectious Diseases

EBV and Infectious Mononucleosis. Infectious Disease Definitions. Infectious Diseases Infectious Disease Definitions Infection when a microorganism invades a host and multiplies enough to disrupt normal function by causing signs and symptoms Pathogencity ability of an organism to cause

More information

EBV infection B cells and lymphomagenesis. Sridhar Chaganti

EBV infection B cells and lymphomagenesis. Sridhar Chaganti EBV infection B cells and lymphomagenesis Sridhar Chaganti How EBV infects B-cells How viral genes influence the infected B cell Differences and similarities between in vitro and in vivo infection How

More information

The U1 snrnp Base Pairs with the 5 Splice Site within a Penta-snRNP Complex

The U1 snrnp Base Pairs with the 5 Splice Site within a Penta-snRNP Complex MOLECULAR AND CELLULAR BIOLOGY, May 2003, p. 3442 3455 Vol. 23, No. 10 0270-7306/03/$08.00 0 DOI: 10.1128/MCB.23.10.3442 3455.2003 Copyright 2003, American Society for Microbiology. All Rights Reserved.

More information

OF LIGHT CHAINS OF CARDIAC MYOSIN ISOZYMES: ATRIAL AND VENTRICULAR MYOSINS

OF LIGHT CHAINS OF CARDIAC MYOSIN ISOZYMES: ATRIAL AND VENTRICULAR MYOSINS CROSS-HYBRIDIZATION OF LIGHT CHAINS OF CARDIAC MYOSIN ISOZYMES: ATRIAL AND VENTRICULAR MYOSINS Gabor HOLLGSI*, Sudhir SRIVASTAVA** and Joan WIKMAN-COFFELT University of California, San Francisco Cardiovascular

More information

Supplementary Information

Supplementary Information Supplementary Information HBV maintains electrostatic homeostasis by modulating negative charges from phosphoserine and encapsidated nucleic acids Authors: Pei-Yi Su 1,2,3, Ching-Jen Yang 2, Tien-Hua Chu

More information