Dr. Cristina Gutierrez, Laboratory Director, CARPHA SARI/ARI SURVEILLANCE IN CARPHA MEMBER STATES

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2 Dr. Cristina Gutierrez, Laboratory Director, CARPHA SARI/ARI SURVEILLANCE IN CARPHA MEMBER STATES

3 SARI/ARI Surveillance in CARPHA Member States* Objectives of SARI Surveillance: To detect unusual or unexpected viral respiratory outbreaks To determine the epidemiologic characteristics of influenza and other viral respiratory diseases To monitor circulating influenza virus strains To make recommendations for annual vaccine composition To detect in a timely manner the emergence of new subtypes Guide the development of policy and guidelines for influenza prevention and control * Excluding Haiti

4 SARI Case Definition Severe Acute Respiratory Infection (SARI) SARI case definition for persons 5 years old: Sudden onset of fever, AND Cough or sore throat, AND Shortness of breath or difficulty breathing, AND Requiring hospital admission. SARI case definition for children <5 years old: Meets the case definition as above OR Any child <5 years old clinically suspected of having pneumonia or severe/very severe pneumonia, and requiring hospital admission.

5 SARI SURVEILLANCE ACTIVITIES AT SENTINEL SITES ARI patient arrives at sentinel site NO Surveillance Officer detects SARI case through review of admission log book A MISSED SARI CASE Admitted to ward- meets case definition Case investigated ACTION: 1. Extracts data from health records to form A 2. Take clinical samples if within time. YES ACTION: 1. Records necessary information using SARI Case Investigation form A. 2. Takes clinical samples, completes laboratory request form B, and arranges sample processing. 3. Alerts surveillance officer and forwards form A 4. Start to fill the weekly report form C. ONGOING SURVEILLANCE ACTIVITIES: Collection of SARI death data for Form C. Collection of denominator data for Form C. Communication with all partners at sentinel site Communication with National Laboratory, EPI, and the National Epidemiologist.

6 CARPHA s Role Laboratory detection technique Real-time RT-PCR (ABI StepOnePlus, ABI 7500 & Stratagene Mx3000P) Detection capacity Influenza A & B Infulenza A subtypes (H3N2, H1N1 pdm09, H5N1, H7N9) Non-influenza respiratory viruses (RSV, Parainfluenza 1,2,3, HMPV, Adenovirus, Rhinovirus) MERS-CoV Surveillance Collection of both individual case data and aggregate data Monitor, analyse and report weekly to member states and other external stakeholders

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10 ARI Case Investigation Form: Clinical and Epidemiologic Record Country Doctor:... Hospital/Site:... Ward: Laboratory Where Sample Sent:... Hospital/Medical Record Number:... Admission Date:.../.../... Discharge Date:.../.../... Last Name,... First Name:.. Date of Birth:.../.../... Age:... Sex:... Date of Onset of Illness:.../.../... Epidemiologic Week Number:... Sample taken: Yes No Date Sample Taken:.../.../... Type of sample taken: Flu Shot: Yes No Date of Vaccination:.../.../... Clinical and Epidemiological Profile Clinical Profile Yes No Yes No Sudden fever Rhinorrhea Cough Sore throat Conjunctivitis Otitis Shortness of breath Difficulty breathing Bronchitis Bronchiolitis Pneumonia Adenopathies Headache Myalgia Vomiting Diarrhea Rash Epidemiological Profile Sporadic case Part of cluster Part of outbreak Animal contact Travel History Yes No Where Treatment: Antivirals Yes No Type:. Antibiotics Yes No Type:. Laboratory Result: Virology.. Bacteriology. Final Diagnosis:. Note: A cluster is defined as three or more persons geospatially or socially linked with onset of disease within 10 days of each other.

11 [NAME OF COUNTRY]: Laboratory Investigation Form APPENDIX 16 Last updated February Patient Information. Last Name Single case Outbreak Survey Unknown 6. Date of Onset of Illness.. First Name d Hospitalized? Y N DK d m m y Patient ID Died? Y N DK y y y Gender M F Age years months Date of Birth d d m m y y y y Street _# # - City/Parish County Postal Code Tel: 2. Referring Doctor. Name: Reporting Address: Tel: Fax: 3. Provisional Diagnosis, Additional Notes 1. 1 information on risk factors, travel history, lab findings, etc. 4. Food/Animal/Environment Sample Details (if relevant) Specimen ID Name of food/env sample Where specimen(s) collected Outbreak Traceback Survey Other. 5. Case/Specimen Status. 7. Outcome. 8. Signs and Symptoms.. Fever Temp: Onset: _dd mm yy_ Rash Location: Onset: _dd mm yy_ Pain Location Hemorrhagic symptoms describe Altered mental state Chills Circulatory collapse Conjunctivitis Chronic Conditions Autoimmune disease Connective tissue disorder Lymphoproliferative disor Transplant recipient/donor Immunocompromised Other specify Convulsions Coryza Cough Diarrhoea, Acute Diarrhoea, Chronic Failure to thrive Genital discharge Genital lesions Hepatomegaly HIV +ve Jaundice Neck stiffness Lymphadenopathy Kernig s sign Paralysis Respiratory, Upper Respiratory, Lower Vomiting Weakness of limbs Weight loss ART Drug Info. 9. Syndromic Classification. AFP Fever & Rash Gastroenteritis Fever & Respiratory or Fever & Hemorrhagic Acute Respiratory Infection Fever (undifferentiated) Fever & Neurologic 10. Immunization History. EPI No: BCG: Y N dd mm yy_ MR: Y N dd mm yy_ DPT: Y N dd mm yy_ Polio: Y N dd mm yy_ HBV: Y N dd mm yy_ YF: Y N dd mm yy MMR: Y N dd mm yy_ Other : Y N dd mm yy_ specify Physician / EHO Use *Serum; EDTA blood; Blood smear; Sputum; CSF; Swab; Urine; Stool; Tissue; Plasma (PPT); Food;Water;Animal;Environment; if other specify Specimen 1 Specimen 2 Specimen 3 *Type of Specimen Date Specimen Collected Lab Test(s) Requested Date Received at Nat Lab Nat Lab Specimen ID Laboratory Use Test(s) Performed Date(s) Tested Laboratory diagnosis Date Referred to CAREC Name of Testing Lab Approved by (Testing. Lab): Date: CAREC USE: Specimen ID (1) (2) (3)

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