Table 2. - Bacterial genera and species identified in the cecums of a CONV-R donor mouse and four CONV-D B6 recipients. identity. identity.

Transcription

1 Table 2. - Bacterial genera and species identified in the cecums of a CONV-R donor mouse and four CONV-D B6 recipients Donor Recipient 1 Recipient 2 Recipient 3 Recipient 4 Closest RDP entry * Total <98% Total <98% Total <98% Total <98% Total <98% sequences identity sequences identity sequences identity sequences identity sequences identity Acetivibrio 1 1 Acetivibrio cellulolyticus (T) 1 1 Anaerophaga Anaerophaga thermohalophila; Fru Bacillus Bacillus silvestris Bacteroides Bacteroides acidofaciens Bacteroides acidofaciens; A24 3 Bacteroides caccae (T); ATCC 43185T 2 2 Bacteroides capillosus; ATCC Bacteroides cf. forsythus oral clone BU Bacteroides distasonis (T) Bacteroides eggerthii (T) 1 Bacteroides merdae (T); ATCC 43184T 1 1 Bacteroides putredinis (T) 1 1 Bacteroides sp. AR20; AR

2 Bacteroides sp. C46; C Bacteroides sp. CJ44; CJ Bacteroides sp. CJ47; CJ Bacteroides sp. CS21; CS Bacteroides sp. CS24; CS Bacteroides sp. oral clone BU045; BU Bacteroides splanchnicus (T) Bacteroides vulgatus (T) Butyrivibrio Butyrivibrio crossotus; NCDO Butyrivibrio fibrisolvens; 0/ Butyrivibrio hungatei; JK Candidatus Candidatus Arthromitus sp. SFB-trout Catonella Catonella morbi (T); ATCC Catonella sp. oral clone BR063; BR Catonella sp. oral clone FL037; FL Citrobacter 1 1 Citrobacter 1 1 Clostridium Clostridium aerotolerans (T); DSM

3 Clostridium aff. innocuum CM970; CM Clostridium aminophilum (T); F Clostridium aminovalericum 1 1 Clostridium bolteae; type strain: Clostridium celerecrescens (T); DSM Clostridium celerecrescens; IrT-JG Clostridium cellulolyticum (T); ATCC Clostridium cellulosi 1 1 Clostridium clostridioforme; Clostridium disporicum (T); DSM Clostridium fimetarium (T); Z Clostridium fusiformis; CM Clostridium glycolicum (T); DSM 1288(T) 1 Clostridium hathewayi; type strain: DSM Clostridium herbivorans (T); Clostridium indolis (T); DSM Clostridium indolis; CM Clostridium leptum; Clostridium leptum; Clostridium methylpentosum (T); DSM Clostridium nexile (T); Clostridium nexile (T); DSM

4 Clostridium orbiscindens (T); DSM Clostridium phytofermentans; ATCC Clostridium polysaccharolyticum (T) Clostridium populeti (T); ATCC Clostridium propionicum (T); DSM Clostridium ramosum 1 1 Clostridium saccharolyticum (T); DSM Clostridium scindens (T); DSM Clostridium sp. ArC5; ArC Clostridium sp. ASF356; ASF Clostridium sp. ASF502; ASF Clostridium sp. CITR8; CITR8 1 1 Clostridium sp. CJ67; CJ Clostridium sp. CS29; CO Clostridium sp. HAAP-2; HAAP Clostridium sp. JC3; JC3 1 1 Clostridium sp. XB90; XB Clostridium sp.; DR6A Clostridium sp.; DR7 1 1 Clostridium sp.; DSM 10643; Lip Clostridium sp.; DSM 6877(FS41) Clostridium sp.; formate

5 Clostridium sp.; LIP Clostridium symbiosum (T) 1 1 Clostridium viride (T); T2-7 (DSM 6836) Clostridium xylanolyticum (T); ATCC Coprococcus 1 1 Coprococcus catus; VPI-C Cytophaga 2 2 Cytophaga marinoflava; ANT Cytophaga sp.; BD Desulfitobacterium Desulfitobacterium hafniense; DP Desulfomicrobium 2 2 Desulfomicrobium macestii (T); DSM Desulfovibrio Desulfovibrio oryzae; DDv 1 1 Desulfovibrio sp. (T); STL Desulfovibrio sp. UNSW3caefatS Eggerthella 1 1 Eggerthella lenta (T); ATCC Erysipelothrix 1 1 Erysipelothrix rhusiopathiae;

6 Escherichia Escherichia albertii; type strain: LMG Escherichia coli Eubacterium Eubacterium biforme (T); ATCC Eubacterium cylindroides Eubacterium desmolans (T) Eubacterium oxidoreducens; DAS Eubacterium plexicaudatum; ASF Eubacterium ramulus (T) Eubacterium ruminantium (T); GA Eubacterium siraeum (T) Eubacterium sp. CJ70; CJ Eubacterium sp. oral clone BS091; BS Eubacterium sp. oral clone BU014; BU Eubacterium sp. oral clone FX033; FX Eubacterium sp. oral clone JH012; JH Eubacterium sp. TW2; TW2 1 1 Eubacterium sp. VPI 12708; VPI Eubacterium ventriosum 2 2 Faecalibacterium 1 1 Faecalibacterium prausnitzii;

7 Firmicutes Firmicutes sp. oral clone AO068; AO Firmicutes sp. oral clone BB124; BB Firmicutes sp. oral clone CK030; CK Firmicutes sp. oral clone F058; F Firmicutes sp. oral clone FM046; FM Firmicutes sp. oral strain FTB41; FTB Firmicutes str. C38; C Flavobacterium Flavobacterium mizutaii; DSM 11724T Herbaspirillum 1 1 Herbaspirillum sp. Chnp3-5; Chnp Holdemania 1 1 Holdemania filiformis (T); ATCC Hyphomonas 1 1 Hyphomonas johnsonii (T); MHS Lachnobacterium 1 1 Lachnobacterium bovis (T); LRC Lachnospira Lachnospira pectinoschiza; Lactobacillus Lactobacillus acidophilus; BMF 6Lb

8 Lactobacillus murinus; ASF Lactobacillus reuteri (T); DSM T Lactobacillus sp. ASF360; ASF Lactobacillus sp. CLE-4; CLE-4 1 Lactobacillus sp. oral clone CX036; CX036 2 Lactobacillus vitulinus (T) 4 4 Marinilabilia Marinilabilia salmonicolor (T) Oscillospira Oscillospira guillermondii; OSC Oscillospira sp. A; A 1 1 Oscillospira sp. F; F 1 1 Oscillospira sp. G; G 1 1 Oscillospira sp. H; H Oscillospira guillermondii; OSC3 1 1 Oscillospira guillermondii; OSC5 3 3 Papillibacter Papillibacter cinnaminovorans (T); CIN Peptococcus 1 1 Peptococcus sp. oral clone MCE10_ Porphyromonas Porphyromonas canis; JCM

9 Porphyromonas sp. oral clone AW032; AW Porphyromonas sp. oral clone BR037; BR Porphyromonas sp. oral clone BS077; BS Porphyromonas sp. oral clone EP003; EP Prevotella Prevotella genomosp. C1; C3MKM Prevotella ruminicola; TC Prevotella sp. oral clone BS041; BS Prevotella sp. oral clone F045; F Prevotella sp. oral clone FL019; FL Roseburia Roseburia intestinalis; L Roseburia intestinalis; L Ruminococcus Ruminococcus albus; OR Ruminococcus bromii 1 1 Ruminococcus callidus (T); ATCC Ruminococcus flavefaciens Ruminococcus gnavus (T); ATCC Ruminococcus hydrogenotrophicus (T); S5a Ruminococcus lactaris (T); ATCC Ruminococcus productus (T); ATCC

10 Ruminococcus schinkii (T); B; CIP Ruminococcus sp. CJ63; CJ Ruminococcus sp. CO28; CO Ruminococcus torques (T); ATCC Selenomonas Selenomonas ruminantium (T); GA Selenomonas sp. oral clone GI064; GI Shewanella Shewanella algae; ATCC Shigella 1 1 Shigella flexneri 2a str. 2457T; 2457T 1 1 Syntrophococcus Syntrophococcus sucromutans; DSM Syntrophococcus sucromutans; S Tannerella Tannerella forsythensis; KM Tannerella forsythensis; TR6 1 1 Thermoanaerobacter Thermoanaerobacter kivui (T) Turicibacter Turicibacter sanguinis 29 28

11 Xiphinematobacter 1 1 Xiphinematobacter rivesi 1 1 Xylophilus 1 1 Xylophilus ampelinus; DSM * Bacterial 16S rdna Ribosomal Database Project (RDP) entries are organized by genus (bold type) with specific RDP entries listed below each genus heading (plain type). Total number of 16S rdna clones that (i) passed the selection criteria described in Materials and Methods, and (ii) were homologous to the respective RDP entry with species or genus information. 16S clones that are defined as "unidentified" (shaded columns) because their closest relative in RDP is either (i) an entry without species assignment, or (ii) an entry with species or genus assignment but with > 98% identity to the respective rdna sequence. These clones are listed according to their closest relative in RDP with species or genus assignment. GenBank accession nos. for the sequences are AY AY Further details of homology analyses are available at