The many faces of actin: matching assembly factors with cellular structures

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1 The many faces of actin: matching assembly factors with cellular structures Ekta Seth Chhabra and Henry N. Higgs Actin filaments are major components of at least 15 distinct structures in metazoan cells. These filaments assemble from a common pool of actin monomers, but do so at different times and places, and in response to different stimuli. All of these structures require actin-filament assembly factors. To date, many assembly factors have been identified, including Arp2/3 complex, multiple formin isoforms and spire. Now, a major task is to figure out which factors assemble which actin-based structures. Here, we focus on structures at the plasma membrane, including both sheet-like protrusive structures (such as lamellipodia and ruffles) and finger-like protrusions (such as filopodia and microvilli). Insights gained from studies of adherens junctions and the immunological synapse are also considered. To the best of our knowledge, actin polymerizes into one type of structure in eukaryotic cells: helical filaments. However, these filaments can be assembled further into a wide variety of higher-order cellular structures ranging from lamellipodia to microvilli (Fig. 1), each of which performs specific functions. We ask one basic question in this review: how are filaments assembled for these structures? Actin filament nucleation is unfavourable; therefore, nucleation factors are required to initiate assembly of any actin-based structure 1. At present, there are three known classes of nucleation factor: Arp2/3 complex, formin proteins and spire. As many of these factors function in multiple steps during assembly of actin-based structures, we prefer the term assembly factor. Identifying the assembly factor for a given actin-based structure is a key step in determining assembly mechanisms, and has been most thoroughly investigated in yeast 2. Here, we focus on actin-based structures in metazoan cells, which are more complex in several respects: first, they contain more known actin-based structures; second, these structures often overlap spatially, making isolated analysis more difficult; and third, metazoans have more known assembly factor isoforms (18 in mammals versus three or four in yeasts). Once nucleated, actin filaments can have several fates. It is the presence of additional regulators that determines which type of actin structure will form. In the absence of other factors, filaments are capped by abundant barbed-end capping proteins, preventing further elongation. Inhibition of capping is essential for structures requiring longer filaments. Furthermore, mature structures often require filament crosslinking into networks, parallel bundling or interaction with membranes. Although we do not discuss in detail the proteins mediating these processes, both Arp2/3 complex and formins can perform these functions (Fig. 2). Instead, we focus on the relationship between specific assembly factors and protrusive actin-based structures at the plasma membrane. Broadly, we divide these protrusive structures into those that are sheet-like (lamellipodia/lamella, ruffles, phagocytic cups, podosomes and invadopodia) and those that are finger-like (filopodia and microvilli). We also discuss two other structures, the immunological synapse and adherens junctions, because of unique issues they raise, particularly concerning links to the microtubule cytoskeleton. Space limitations prevent us from discussing the many other metazoan actin-based structures (for example, stress fibres, endocytic pits, peri-organellar actin, the cytokinetic ring, cortical spectrin-actin and nuclear actin). Kickstarting polymerization: actin assembly factors Actin monomers self-assemble into helical filaments (Fig. 2a) 1,3. The initial nucleation phase (assembly of dimeric and trimeric complexes) is highly unfavourable and slow but, once overcome, filament elongation is much more rapid. As all actin subunits face the same direction, the filament is polar, with a barbed and a pointed end. Monomers can add to or depolymerize from either end, but both processes are more than tenfold faster at the barbed end. In metazoan non-muscle cells, the action of profilin which adds actin monomers to the barbed end only enhances this effect and effectively limits elongation to barbed ends. Most actin-based structures maintain appreciable flux of actin monomers through the filament, with monomers adding at barbed ends and depolymerizing at pointed ends 4 7. The first actin assembly factor to be identified was the Arp2/3 complex, composed of seven polypeptides (ARPC 1 5, Arp2 and Arp3). Arp2 and Arp3 are actin-related proteins, and are postulated to mimic an actin dimer that can elongate towards the barbed end. The Arp2 Arp3 dimer thereby serves as a nucleation site, and the complex remains at the pointed end of the filament 8,9. In addition, the Arp2/3 complex binds to the side of pre-existing actin filaments, and its nucleation activity Ekta Seth Chhabra and Henry N. Higgs are in the Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA. henry.n.higgs@dartmouth.edu 1110 nature cell biology volume 9 number 10 OCTOBER 2007

2 a Filopodium Lamellipodium Ruffle Lamellum Microvillus Cortical actin Podosome Endosome Phagocytic cup Stress fibre Endocytic pit Golgi-associated actin Cadherin-based adherens junction Nuclear actin b Peripheral ruffle Dorsal ruffle N Lamellipodium Podosome N Substratum Lamellum Invadopodium Figure 1 Actin-based structures in metazoan cells. The helical actin filament is used in a myriad of cellular processes. (a) A hypothetical metazoan cell, migrating upwards and attached to a second cell on the right. Cellular structures known or strongly suspected to contain actin filaments are indicated. (b) A side view of a cell, emphasizing several points: ruffles are dorsal structures; peripheral ruffles and dorsal thereby produces a branched filament structure with an angle of 70 between the filaments. Repeated branching leads to a dendritic network (Fig. 2b). In this manner, the Arp2/3 complex functions not only as a nucleation factor, but also provides structure to the network. Most of the Arp2/3 complex subunits are single isoforms in all organisms, with a few exceptions in mammals and Drosophila 13. The Arp2/3 complex requires activation by one of several nucleation promoting factors (NPFs), including WASp, N-WASP, Scar/WAVE1, Scar/WAVE2 and Scar/WAVE3 in mammals 8. Formins were identified more recently as a second family of actin assembly factors. In contrast with the Arp2/3 complex, formins are single polypeptide, multidomain proteins 14. All formins studied to date are dimeric, due to dimerization of their formin homology 2 (FH2) domain. The FH2 domain is responsible for driving actin nucleation and formin-nucleated filaments are not branched. After nucleation, the FH2 domain remains bound at the barbed end and moves processively as it elongates, promoting elongation by preventing the access of capping proteins (Fig. 2b). Formin-mediated elongation is further enhanced by ruffles are distinct structures; podosomes and invadopodia are ventral; lamellipodia are weakly adherent to the substratum. As far as we know, all these structures use the same basic helical actin filament. This is by no means a complete inventory of metazoan actin-based structures, and we strongly suspect filaments to be involved in other, as yet unidentified processes. N, nucleus. the association of profilin with the FH1 domain of formin 15. Although all formins have these basic properties, they vary significantly in their potency 14. In addition, some formins also bundle, sever or depolymerize actin filaments Most organisms have multiple formin isoforms (15 in mammals, six each in Drosophila and Caenorhabditis elegans) 21. It is becoming increasingly clear that formins have additional roles in microtubule dynamics (see below) 22,23. At present, the best understood mechanism of formin regulation is through direct activation by Rho family GTPases 24. Spire proteins are a third class of actin nucleators that were initially identified in Drosophila 25. Spire proteins are single polypeptides characterized by the presence of four Wasp homology 2 (WH2) motifs, which are responsible for actin nucleation 26. As with formins, spire-nucleated filaments are not branched (Fig. 2b). Spire can crosslink microtubules and actin filaments 27, and also inhibits actin nucleation by the formin cappuccino in Drosophila and its mammalian homologue, formin1 (M. Quinlan, University of California at San Francisco, San Francisco, CA, and R. D. Mullins, University of California at Los Angeles, Los Angeles, nature cell biology volume 9 number 10 OCTOBER

3 CA, unpublished observations). This inhibition is through binding between KIND domain of spire and the FH2 domain of formin. Metazoans have two spire genes, whereas yeast have none. a B P Assembling filaments for diverse cellular functions A schematic overview of metazoan actin-based structures is shown in Fig. 1. In this section, we review what is known of the actin-filament architectures underlying some of these structures, and how they are assembled. b Nucleation factor Sheet-like protrusive structures. Cells extend a variety of sheet-like structures, and we discuss three basic types: lamellipodia/lamella, ruffles and phagocytic cups. The adhesive structures known as podosomes and invadopodia are not strictly sheet-like, but require many of the same assembly proteins as lamellipodia. Lamellipodium and lamellum. We define the lamellipodia/lamella as surface-attached sheet-like membrane protrusions observed during crawling cell motility and spreading. The first step in crawling cell motility is the forward protrusion of the cell front, generally as a thin sheet of membrane-enclosed cytoplasm 1. In an elegant series of papers, Abercrombie et al. defined the key characteristics of two regions within this protrusive front, now known as the lamellipodium and lamellum (see Timeline). The lamellipodium is more distal, starting at the leading edge and extending several micrometres back. The lamellum then takes over, extending from the lamellipodium to the cell body. The lamellipodium is thinner ( nm thick versus >200 nm), more densely stained in electron microscopy images 31, less adherent, seems devoid of organelles and is more dynamic. Although these properties were revealed by Abercrombie s landmark studies, subsequent work better defined additional adhesive differences, with lamellipodia being weakly adherent, and strong adhesion beginning at the lamellipodia lamella boundary Two breakthroughs have changed our conception of the lamellipodium and lamellum dramatically. The first was the discovery that dendritically branched filaments dominate the actin network at the extreme leading edge 35,36 ; the second was the observation that two distinct actinbased networks constitute the lamellipodium and lamellum 37. The evolution of this field is a beautiful example of two basic facets of modern biomedical research: the ability of technological advances to change a field; and the power of having multiple laboratories investigating overlapping subjects. The first finding, that dendritically branched filaments dominate near the leading edge 35,36, represented a major change in our view of cell motility. Before these data, the protrusive region of the cell was generally considered to contain orthogonally crosslinked filaments. The discovery of the dendritic network coincided closely with the finding that the Arp2/3 complex could nucleate dendritically branched filaments 38. Very rapidly, the Arp2/3 complex was considered the dominant nucleator driving leading-edge protrusion. The second finding, that two filament populations exist at the leading edge, was a direct result of technological advances and astute observation 37. The technological advance was fluorescent speckle microscopy (FSM) the phenomenon of speckle movement on cellular structures because of low levels of fluorophore incorporation 39. Using FSM on actin filaments in marsupial kidney epithelial cells, two speckle populations were observed in the protruding region. One population, referred to as Arp 2/3 Formin Spire Figure 2 Filament polymerization by actin assembly factors. (a) During actinfilament assembly from monomers, the dimerization and trimerization steps are unfavourable, whereas subsequent monomer additions are much more favourable. Nucleation factors overcome these unfavourable dimerization and/or trimerization steps. Actin filaments are polar structures, with the barbed end (B) being the sole site of elongation in non-muscle cells. Thus, physiologically relevant nucleation factors must allow barbed-end elongation. (b) The Arp2/3 complex (multi-coloured) nucleates a new filament from the side of an existing filament, causing filament branching at a 70 angle. The Arp2/3 complex remains at the branch point between the pointed end of the new filament and the side of the existing filament. Repeated branching results in the assembly of a dendritic network. The formin FH2 domain (semi-circles) nucleates a filament, and then moves processively with the barbed end as it elongates. Some formins can also bundle filaments. Spire (circles with black connectors) nucleates a filament by stabilizing a longitudinal tetramer. The current model is that spire dissociates from filaments soon after nucleation. lamellipodial speckles, is observed at the leading-edge plasma membrane and disappears abruptly about 1 3 µm back 37, seemingly at the lamellipodial lamellar boundary where the first stable adhesion to the substratum occurs 34. A second population appears in a more graded fashion, increasing in frequency with distance from the leading edge and persisting through the lamellum. The two populations differ in kinetics, with lamellipodial speckles exhibiting rapid retrograde flow and lamellar speckles moving more slowly; transitions between the two states are extremely rare. Taken together, these data suggest that two sets of actin filaments exist in the lamellipodia and lamella, which are independently nucleated and disassembled. Similar results have been obtained using Drosophila S2 cells 40, and further support for two independent actin networks comes from retrospective examination of fixed cells. In highly motile fish or Xenopus keratocytes, the actin network is significantly more dense near the 1112 nature cell biology volume 9 number 10 OCTOBER 2007

4 TIMELINE History of the terms Lamellipodia, Lamella and Ruffles LAMELLUM (plural, lamella) Coined in 1969 to replace ruffled membrane for the protrusive region of a motile fibroblast 133. Also recognized that only the first 3-5 microns of the lamellum had ruffling activity In 1971, differences between lamellipodia and lamella were defined more fully by EM criteria, in terms of thickness, staining density, presence of organelles, and apparent adhesion RUFFLE Coined in 1958 to describe the protruding leading edge of a motile cell 132. Used interchangeably with ruffled membrane. LAMELLIPODIUM (plural, lamellipodia) Coined in 1970 to differentiate the highly protrusive, distal portion at the front of the motile cell (first several microns) from the rest of the lamellum 22. No distinction made between protrusions parallel to the substratum and those that protruded vertically, although the term ruffle was used as well to describe these structures First record of differentiation between lamellipodia and ruffles. In Abercrombie s much-cited review 134, lamellipodia defined as forward-protruding structures that adhere weakly to substratum, with ruffles being of similar morphology, but non-adhered and often protruding dorsally. leading edge than it is farther back, and a large proportion of these filaments are labile to extraction 35,36,41. Electron microscopy of fish keratocytes reveals that filaments within 1 µm of the leading edge are predominantly short and crosslinked in dendritic branches, whereas most filaments farther back are longer and less dendritically branched 35. Electron microscopic analysis of the protrusive regions of mouse embryo fibroblasts suggests a similar organization of the two networks 42. Where studied, both lamellipodial and lamellar filaments orient with barbed ends toward the leading edge plasma membrane 35 and the movement of actin speckles supports this orientation 37. It has also been suggested that the lamellipodium may lie on top of the lamellum 43. At the leading edge, a layer of densely packed filaments seems to lie above a second network of less dense filaments that extends further back. The speculation is that the upper layer represents lamellipodial filaments, whereas the lower layer is lamellar (Fig. 3b). The rear of the lamellipodium is thought to be specified by myosin-ii-based contraction at adhesion sites, which is vital for lamellipodial disassembly. Although this model of the two networks being vertically separated needs to be tested further, there may also be support for this idea in the early electron microscopy work by Abercrombie 31. Based on the above findings, we conclude that two autonomous actin networks are present in the protrusive region, with the lamellipodial filaments probably overlaying the lamellar filaments (Fig. 3a). Clearly, the proportions and characteristics of these networks might vary substantially between cell types, especially between slow-moving (for example, fibroblasts) and fast-moving cells (for example, keratocytes). In this respect, speckle analysis of actin networks in keratocytes would be highly informative, as so much ultrastructural information is available for these cells. The question also remains concerning the relative importance of these networks in motility. How are lamellipodia and lamella assembled? Most evidence suggests that lamellipodia are Arp2/3 complex dependent: first, there is a strong correlation between Arp2/3-complex localization and lamellipodial dynamics. The lamellipodial network contains predominately dendritic branches in several instances 35,36,44 and the Arp2/3 complex localizes to dendritic branch points in these cells 36, as well as to the leading edge in multiple cell types 10, Second, Arp2/3-complex dynamics are confined largely to lamellipodia in Xenopus 49 and Drosophila 40. In the latter case, treatments that vary the width of the lamellipodium proportionally vary the width of the Arp2/3 complex-rich region. Third, altering the activity of the Arp2/3 complex affects lamellipodial structures. Overexpression of central acidic (CA) or WH2 central acidic (WCA) constructs that inhibit the Arp2/3 complex also block lamellipodia assembly 10,48,50, although efficacy of these constructs is not universally accepted (Box 1). Microinjection of antibodies that inhibit dendritic branching by the Arp2/3 complex inhibits lamellipodial protrusion 51. Knockdown of an Arp2/3-complex subunit causes significant lamellipodial loss in mouse cells 52 and strongly inhibits cell spreading in Drosophila cells 53. Debate continues, however, as to how universal the role of the Arp2/3 complex at the leading edge is. One RNA interference (RNAi) study in mouse embryonic fibroblasts argues that the Arp2/3 complex is not required in lamellipodia 54. Another suggests that the Arp2/3 complex does not localize to the leading edge in neuronal growth cones, and that overexpression of CA constructs does not alter growth cone morphology or slow growth cone motility 48. Others have found the Arp2/3 complex present in, and necessary for, growth-cone protrusion (T. Svitkina, University of Pennsylvania, Philadelphia, PA, unpublished observations). One issue in these studies may be how efficiently the Arp2/3 complex is inhibited, given that it is highly abundant 9. Mathematical models of leading-edge protrusion suggest that the Arp2/3 complex may be in large excess over that needed for normal migration on experimental surfaces 55. It would, therefore, be interesting to evaluate Arp2/3 complex-inhibited cells by FSM to determine whether the narrow band of lamellipodial speckles is completely ablated. Less is known about the nucleators required for lamellar actin filaments. The Arp2/3 complex seems largely absent from this region 36,40,49, and inhibiting the Arp2/3 complex or other lamellipodial proteins does not alter lamellar properties 40,50. The formin mdia2 is implicated in lamellar filament assembly, as well as in focal adhesion turnover nature cell biology volume 9 number 10 OCTOBER

5 a b Lamellipodium Lamellum Substratum Weak adhesion site Stable adhesion site Ruffle c Filopodium Filopodium Figure 3 Schematic representations of models of assembly for lamellipodia, lamella, peripheral ruffles and filopodia. (a) Top view of lamellipodia and lamella. Lamellipodial actin filaments (blue) are dendritically branched and Arp2/3-complex-dependent. These filaments assemble at the leading edge plasma membrane (due to assembly factors bound there) and disassemble abruptly at a band corresponding to the first sites of stable adhesion (green), generally 1 3 µm from the leading edge. Lamellar actin filaments (red) are in a less defined network, and are not Arp2/3 complex-dependent. They can initiate throughout the lamellipodium and lamellum, but their frequency increases as one moves back from the leading edge. Lamellar filaments persist many micrometres behind the lamellipodium, and disassembly can occur throughout this region. (b) Side views of lamellipodium and lamellum. (C.Waterman-Storer, University of Washington, WA, unpublished observations), suggesting a potential association between lamellar filaments and focal adhesions. However, mdia2 is not expressed in several motile cell types, suggesting it may be functionally redundant with mdia1, mdia3 or other fomins. Ruffles. We define ruffles as sheet-like membrane protrusions that do not attach at all to the substratum, as opposed to weakly adherent lamellipodia. There are at least two distinct varieties of these transient structures, both with half-lives of minutes. Peripheral ruffles assemble at the leading edge of motile cells, and move rearward 29. Circular dorsal ruffles also called waves or actin ribbons assemble on the dorsal surface and constrict into a circular structure before disappearing. These seem to be distinct structures, as rearward-moving peripheral ruffles do not transition to dorsal ruffles 56. Peripheral ruffles are associated with crawling-cell motility only, whereas dorsal ruffles also affect receptor internalization and possibly macropinocytosis 57. A distinction between peripheral and dorsal ruffles was made by Abercrombie 29. It is tempting to speculate that peripheral and dorsal ruffles arise through the same mechanisms as lamellipodia. Indeed, early live-cell Lamellipodial filaments may lie above lamellar filaments. At the leading edge, lamellipodial filaments predominate, but lamellar filaments increase in abundance further back. A lamellipodium maintaining weak attachment to the substratum is shown in the upper panel. Myosin II activity at the stable adhesion site causes retrograde flow of the lamellipodial actin network. If the lamellipodial attachment with the substrate is broken, myosin II activity causes this membrane sheet to move rearward as a peripheral ruffle, which disassembles at the stable adhesion site (lower panel). (c) Filopodial assembly from the lamellipodium or lamellum. Filopodial assembly from the lamellipodial network through the convergent-elongation mechanism is shown on the left. Possible filopodial assembly from the lamellar network, through an as yet undefined mechanism, is shown on the right. imaging studies provide convincing evidence that peripheral ruffles and lamellipodia have common origins 29, and recent results support this hypothesis 43. The Arp2/3 complex seems to be important for assembly of both types of ruffle 56,58. Most recently, the presence of dendritically branched filaments in peripheral ruffles was observed 59. Formins may also function in peripheral-ruffle dynamics: first, active RhoA thought to directly activate the formins mdia1 and mdia2, but not the Arp2/3 complex is enriched at the leading edge of multiple mammalian cell types, both in lamellipodia and ruffles 60 64, and is required for ruffle assembly 61 ; second, mdia1 is enriched at ruffle edges 60,61,63 ; and third, coexpression of constitutively active Rac1 and dominant-negative RhoA allows spreading, but blocks ruffles 61. This result hints at potential differences between lamellipodia and peripheral ruffles, by suggesting that Rac1 activation of the Arp2/3 complex (through Scar or WAVE) is sufficient for lamellipodia, but not ruffle, generation. The proposal that the lamellipodial network lies above the lamellar network might also explain the role of mdia1 in peripheral ruffles 43 : according to this study, the rear of the lamellipodium is specified by assembly of a myosin II-based contractile complex at sites of stable adhesion (Fig. 3a), and its contraction pulls 1114 nature cell biology volume 9 number 10 OCTOBER 2007

6 Box 1 Tools for regulating the Arp2/3 complex: WCA and CA constructs WCA constructs refer to the minimum polypeptide sufficient for in vitro activation of the Arp2/3 complex, located at the carboxyl termini of most nucleation-promoting factors 9. WCA binds both the Arp2/3 complex and an actin monomer. Overexpression of WCA constructs has been used to inhibit the Arp2/3 complex, on the basis that these constructs would activate the Arp2/3 complex in a mislocalized fashion, preventing localized activation by endogenous nucleation-promoting factors. CA constructs are shorter and only bind to the Arp2/3 complex. The CA construct of WASp competes with Arp2/3-complex activators in vitro, blocking nucleation 73. In vivo, CA constructs are predicted to sequester the Arp2/3 complex from endogenous nucleation-promoting factors. Reviews are mixed on the efficacy and specificity of these constructs for Arp2/3-complex inhibition in cells. Many researchers have reported successful cellular inhibition of the Arp2/3 complex with these constructs (see main text). However, one concern with WCA is that high expression might sequester significant amounts of actin monomer, causing additional effects that are not dependent on the Arp2/3 complex. As for CA, some report lack of effect on cellular processes strongly believed to depend on Arp2/3 complex. lamellipodial filaments rearward. If the extreme leading edge remains adhered to the substratum, contraction causes retrograde flow. If, however, the connection is broken, the whole leading edge, including actin filaments and plasma membrane, moves rearward as a peripheral ruffle (Fig. 3b). Support for this model can be found in the earlier studies of Abercrombie 31. The lamellar network makes up part of the substrate adhesion complex 34 and so may be essential for peripheral ruffles. Perhaps mdia formins mediate lamellarfilament assembly in fibroblasts? Immunofluorescence microscopy illustrates that mdia1 localizes to the edge of spreading cells in several cell types (refs 23, 63; K. Eisenmann and A. Alberts, Van Andel Institute, Grand Rapids, MI, unpublished observations; H.N.H, unpublished observations). Our current conclusion is that lamellipodia and peripheral ruffles arise from the same assembly mechanism, and differ in substrate adhesion. The assembly mechanism for dorsal ruffles is unclear, but probably involves Arp2/3 complex-generated dendritic networks. Phagocytic cups and pits. Phagocytosis is the cellular uptake of particles larger than 0.5 µm diameter. Although both types of phagocytosis conducted by macrophages Fc receptor-mediated (FcR) and complement receptor-mediated (CR) require actin polymerization, they differ substantially in morphology 64. In FcR-mediated phagocytosis, the macrophage membrane protrudes around the phagocytosed particle. Following membrane fusion at the distal tip, the particle is then pulled into the macrophage. In CR-mediated phagocytosis, the particle sinks into the macrophage and the macrophage does not extend toward the particle. The morphology of the actin filaments is not known for either process. Based on the protrusive, sheet-like nature of the phagocytic cups in FcR-mediated phagocytosis, we speculate that these cups use lamellipodia-like or lamella-like filaments. One difference, however, is that phagocytic-cup assembly requires extensive vesicle fusion 65, which has not been shown for lamellipodia or lamella. The Arp2/3 complex seems to be required for both types of phagocytosis, based on its localization to these structures and on inhibition of both processes by WCA constructs 66. In addition, WASP GFP localizes to FcR-mediated phagosomes, and macrophages lacking WASP are compromised in FcR-mediated phagocytosis 67. The formins mdia1 and mdia2 seem to function in CR-mediated phagocytosis 68. Podosomes and invadopodia. Podosomes are integrin-containing structures on the basal cell surface, containing an actin-rich core surrounded by a ring of several actin-associated proteins and signalling proteins (Fig. 1) 57,69,70. They have been studied in detail in a limited number of cells Src-transformed fibroblasts and monocyte-derived cells (such as macrophages, dendritic cells and osteoclasts). However, the evidence is mounting that podosomes are also present in other cell types 71,72, and may mediate integrin-based adhesion to extracellular matrix. Invadopodia have a similar architecture and protein composition to podosomes, but are formed by cells migrating over thick extracellular matrix, and mediate matrix degradation 69,70. Podosomes which some have postulated to be invadopodia precursors are smaller (approximately 0.5 µm diameter and 0.5 µm height), whereas invadopodia are wider (2 µm diameter) and protrude several micrometres into the extracellular matrix (Fig. 1). Both structures are hot spots for membrane dynamics, and invadopodia have extensive plasma membrane invaginations. Where examined, both podosomes and invadopodia are enriched in a specific matrix metalloprotease 57,69,70. All evidence points to the Arp2/3 complex as the key nucleator for both podosomes and invadopodia. The Arp2/3 complex and several of its regulators are enriched in macrophage podosomes 57,69,70. Microinjection of CA constructs blocks podosome assembly in macrophages 73,74. Human Wiskott-Aldrich Syndrome patients, who lack WASp, do not have macrophage and dendritic cell podosomes 75,76. N-WASP is enriched at podosomes of non-haematopoietic cells, and is important for their assembly 77. N-WASP and the Arp2/3 complex are enriched in, and are required for, invadopodia assembly 78. The ultrastructural details of the actin network are unclear for podosomes and invadopodia. Clearly, the filaments are densely packed in both, but it is uncertain whether they are dendritically branched, straight or crosslinked into orthogonal networks. In view of the requirement for the Arp2/3 complex in these structures, one would postulate dendritic branching is present, but it will be important to confirm this. Finger-like protrusive structures. The range of finger-like protrusions observed in metazoan cells is enormous, and our general view is that multiple assembly mechanisms are likely. We define filopodia and microvilli as thin (less than 200 nm diameter) protrusions, containing parallel bundles of actin filaments that run the length of the protrusion and orient their barbed ends towards the membrane. nature cell biology volume 9 number 10 OCTOBER

7 a Tip complex Ena/Vasp, Formin, myosin X b Electron-dense mass Fascin (and/or formin?) Myosin I ERM protein Villin Fimbrin Epsin Terminal web Figure 4 Schematic representations of models for assembly of filopodia and microvilli. (a) A top view of a filopodium a finger-like, actin-rich protrusion that is adhered to the substratum. An electron-dense complex at the tip seems to be enriched in Ena/Vasp proteins, myosin X and formins. Fascin seems to be the predominant bundling protein in the most well characterized filopodia systems. One possibility is that formins might contribute to bundling in some cases. Most often, the filopodial base is embedded in the lamellipodium and lamellum. The convergent-elongation model of filopodial We define filopodia as finger-like protrusions that are adhered in some manner to a substratum or another cell. We define microvilli as fingerlike protrusions that are not adhered. Of course, grey areas exist between these definitions, in particular when both adherent and non-adherent finger-like protrusions are experimentally induced 79. In addition to these simple finger-like protrusions, a wide variety of larger and more complex protrusions (including Drosophila bristles and hair-cell stereocilia) use multiple modules of actin bundles, but these are not discussed here (for a review, see ref. 80). Filopodia. Filopodia protrude from the leading edge of many motile cells, including fibroblasts and nerve growth cones (Fig. 4) 81. In these situations, filopodia emanate from a lamellipodial or lamellar sheet, and are believed to function as directional sensors 82 (perhaps through enrichment of activated integrins in filopodial tips 83 ). Viruses often bind at filopodial tips, and are transported back to the cell body before being internalized 84,85. A similar process occurs for activated epidermal growth factor (EGF) receptor on adenocarcinoma cells 86. Finally, filopodia are abundant on neuronal dendrites, and seem to be important for dendritic spine development 87. assembly is thought to occur through re-organization of the Arp2/3 complexdependent lamellipodial network. (b) A side view of a microvillus, which has similar finger-like morphology to filopodia, but is not attached to the substratum. The most well characterized microvilli on epithelial cells (brushborder microvilli) contain parallel bundles of actin filaments, crosslinked by villin, fimbrin and espin. Microvilli contain an electron-dense mass at their tip. At their base, epithelial microvilli seem to be embedded in the terminal web, which is composed of actin filaments and myosin II. Electron microscopy analyses show that filopodia contain bundles of long parallel filaments 36, These extend deep into the lamellipodium or lamellum, where they eventually splay at their pointed ends. The sites and mechanisms for filopodia assembly are currently under debate. One model is that filopodia assemble by convergent elongation of lamellipodial filaments 44,91, through re-organization of the Arp2/3 complex-assembled dendritic network into bundles. This re-organization is initiated when a subset of filament barbed ends associate with a filopodial-tip protein complex at the leading edge plasma membrane. This complex, containing the Ena/VASP actin-binding proteins and possibly formins, protects barbed ends from capping proteins, thus allowing them to elongate preferentially in the network. Contacting filaments would then be bundled by the bundling protein fascin to eventually produce a filopodium 91. The convergent elongation model requires Arp2/3 complex-mediated nucleation, followed by rearrangement of the dendritic network. However, recent studies depleting subunits of the Arp2/3 complex by RNAi have provided conflicting results in terms of whether filopodia or just lamellipodia were affected (T. Svitkina, unpublished 1116 nature cell biology volume 9 number 10 OCTOBER 2007

8 Nucleus T cell Formins (mdia1, FRL1)? Arp2/3 APC Figure 5 Actin assembly factors and immune synapse. The Arp2/3 complex localizes to the actin-rich contact site (red) at the immune synapse in T cells, and is necessary for full actin accumulation at the immune synapse. mdia1 and FRL1 localize to both the actin-rich site and to regions surrounding the MTOC (green). Knockdown of either mdia1 or FRL1 inhibits MTOC re-orientation toward the immune synapse. Effects of formins on actin polymerization at the immune synapse are controversial, with one report indicating that deletion of mdia1 ablates filament accumulation, and another indicating no effect of either mdia1 or FRL1 knockdown on filament accumulation. FRL1 and mdia1 seem to act independently at the MTOC, in view of their differential localization patterns around the MTOC, and the observations that knockdown of either inhibits MTOC re-orientation. APC, antigen-presenting cell. observations) 52. Both of these studies use B16F1 mouse melanoma cells, but with potentially key variations in the substrates on which the cells were plated and in the medium added to the cells. A third study reports a slight increase in filopodia number in mouse embryonic fibroblasts when Arp3 is depleted by RNAi 54. Finally, N-WASP has been shown to trigger filopodia assembly downstream of Cdc42 (ref. 92), but cells lacking N-WASP still possess filopodia 93. Regarding formins, mdia2 has been linked to filopodia assembly 79,94,95 (T. Svitkina, unpublished observations). In many of these cases, it is unclear whether the structures hold to our adhesion-based definitions of filopodia, as both adherent and non-adherent finger-like protrusions are visible. It is possible that overexpression of formins or other proteins used in these studies causes assembly of both structures. A formin is also required for filopodia in Dictyostelium 96, although the localization of a GFP-fusion of this formin to finger-like protrusions irrespective of substrate-attachment in this study raises questions about our distinction between microvilli and filopodia. Our opinion is that there may be multiple potential mechanisms for assembling filopodia. Filopodial assembly requires three basic steps: filament nucleation, sustained barbed-end elongation and filament bundling. A variety of molecules may be capable of accomplishing each task. Moreover, bundled structures can be nucleated by the Arp2/3 complex or formins in vitro 17,19,97,98. We believe that it is perfectly possible that different mechanisms of filament nucleation are used in distinct cellular environments. After assembling, leading-edge filopodia elongate at rates between 1 5 µm min 1 in multiple cell types 5,52. However, elongation dynamics vary, even during the lifetime of a single filopodium, with periods of elongation and retraction. In growth-cone filopodia, the elongation rate depends on a balance between monomer addition at the tip, and retrograde flow combined with depolymerization at the base 5. Most commonly, retrograde flow and depolymerization seems fairly constant, whereas monomer addition rate varies. An interesting possibility is that formins are at the barbed ends of filopodial filaments and their regulation controls elongation rate. The basic structure of filopodia, and how they relate to lamellipodia and lamella, is still open to surprises, and recent results may impact on possible assembly mechanisms. Although most electron microscopy studies show that filopodia consist of long, parallel filaments, recent cryo-electron microscopy work in Dictyostelium suggests that shorter filaments may also be present that are not necessarily parallel, with very short filaments in a meshwork pattern at the tip 99. The suggestion from this work is that these shorter, labile, filaments may have been destroyed by previous electron microscopy preparations. We reserve judgment on this possibility until similar observations are made for other filopodia, as these Dictyostelium filopodia elongate approximately twentyfold faster than most other protrusions (about 1 µmicron s 1 ) and, thus, may use a fundamentally different protrusive mechanism. The suggestion that the lamellipodium lies on top of the lamellum 43 has implications for filopodia assembly. If filopodia derive from the action of the Arp2/3 complex in the lamellipodium, do they transition at some point to the lower, lamellar layer, as their roots often end up proximal to lamellipodium (Fig. 3c)? Or, do they assemble from the dendritic network at the lamellipodium lamellum interface? Could filopodia-like protrusions derive from the lamellum? Clearly, many other mechanisms are possible. The definition of a filopodium can be quite subjective, if based solely on light microscopy of fixed cells. Care must be taken to ensure that the structures are protrusive, and not retraction fibres. Some protrusions defined as filopodia in the literature are less finger-like than others, being wider overall and splaying to widths of several microns at their intersection with the lamellipodium lamellum. In addition, fibroblasts can protrude filopodia-like structures from regions containing no obvious lamellipodium or lamellum (S. Nicholson-Dykstra, Dartmouth, Hanover, NH, and H.N.H., unpublished observations). We question whether all such structures are subject to a common assembly mechanism. Microvilli. Microvilli are most recognizable on the luminal surfaces of intestinal and kidney epithelial cells, where they are densely packed and of uniform length (around 2 µm; ref. 100). However, shorter (<0.5 µm) and more variable length microvilli are present on many cell types, including circulating lymphocytes and the dorsal surfaces of many cultured cells 101,102. Although the function of epithelial microvilli is to increase absorptive surface area, lymphocyte microvilli may segregate cell surface proteins 103,104 a property that may aid extravasation from blood to the periphery. Both epithelial and lymphocyte microvilli contain long actin filaments arranged in parallel bundles 100,102. Although epithelial microvilli maintain constant length after initial assembly, their actin filaments are still dynamic, with subunits adding at barbed ends and dissociating at pointed ends 7,105. Shorter microvilli seem to have dynamic lengths, elongating and retracting on a timescale of minutes 101,102. The cellular environment from which microvilli grow seems to be fundamentally different from that of most filopodia, and does not involve a clear lamellipodial or lamellar surface. The apical surface of epithelial cells contains an actin meshwork called the terminal web (Fig. 4) that is rich in myosin II and spectrin, and the actin filaments do not seem to be dendritically branched The small diameter of blood lymphocytes nature cell biology volume 9 number 10 OCTOBER

9 (<10 µm) allows about 2 µm of cytoplasm surrounding the nucleus, and it is unclear how actin filaments here are organized 102. It would be useful to characterize actin organization at the base of microvilli in more detail, in light of our new knowledge of the Arp2/3 complex and formins. We feel that it is unlikely that microvilli require the Arp2/3 complex for assembly. RNAi-mediated knockdown of Arp2 has no effect on microvillar morphology in a lymphocyte culture line (S. Nicholson-Dykstra, Dartmouth, Hanover, NH, and H.N.H., unpublished observations). However, formins affect microvillar assembly in both Dictyostelium 96 and NIH3T3 cells 79. It is unclear how the latter structures relate to Cdc42- dependent filopodia in NIH3T3 cells, which also require mdia2 (ref. 94). In addition, all of these structures deviate from our definition of microvilli, as they include both attached and unattached protrusions. Novel insights from adhesion structures Recent studies of adhesion structures have revealed an intricate interplay between multiple actin-based structures, as well as a role for formins in controlling microtubule-based structures. Immunological synapse. The term immunological synapse refers to the extensive interaction surface between a T lymphocyte and an antigen-presenting cell bound to specific antigen, mediated by both integrin-based and T-cell receptor-based interactions 109. This structure is important in establishing cell cell adhesion and T-cell polarity, and is necessary for T-cell activation. An early and requisite step in synapse assembly is massive actin polymerization on the T-cell side, which expands the interaction surface. Following this event, the microtubule organizing centre (MTOC) (and also the Golgi) re-orients towards the synapse, and a variety of substances are secreted towards the antigenpresenting cell. The actin-based structure at the synapse is widely considered to be a lamellipodium 110, and this is supported by recent RNAi studies 23. Knockdown of either Arp2 or Arp3 in Jurkat T cells inhibits spreading or polymerization of a tight F-actin band at the synapse, depending on the experimental setting. However, polarized actin-rich finger-like protrusions persist at the synapse interface in the near absence of the Arp2/3 complex (Fig. 5). Interestingly, although two formins (mdia1 and FRL1) colocalize with F-actin at the synapse, suppression of either formin alone or in combination affects neither spreading nor the finger-like protrusions. Instead, mdia1 and FRL1 also localize near the MTOC and are important for MTOC repositioning towards the synapse. Another study, using splenic T cells from mdia1 knockout mice, also results in disrupted MTOC polarization 111. However, these cells also have an almost complete loss of polymerized actin staining at the synapse, in contrast with the Jurkat cell study. Clearly, differences between the experiments could explain these inconsistencies in the role of mdia1 in actin assembly at the immunological synapse. One possibility is that the residual mdia1 remaining after RNAi is sufficient for the actin response, but not for the MTOC response. Using quantitative immunoblotting, we found that Jurkat cells express 170,000 molecules of mdia1 per cell (H.N.H., unpublished observations), so that >90% suppression (estimated from westerns in ref. 23), would result in 10,000 20,000 remaining molecules. Another possibility is that mdia1 knockout in T lymphocytes results in secondary effects on Arp2/3-complex levels or activity. It would be interesting to probe the levels of Arp2/3-complex subunits, or the WASp and WAVE2 in these cells; WAVE2 seems to be the Arp2/3-complex regulator primarily responsible for actin assembly at the synapse 112. Another consideration is the time allowed for synapse assembly in these different model systems. The role for these formins in MTOC repositioning is not the first evidence of association between formins and microtubule-based structures. mdia regulates microtubule stabilization in fibroblasts 22, and mdia2 can interact with microtubule-binding proteins 113. In addition, there is evidence that mdia1 effects MTOC positioning in migrating fibroblasts, although this result is not universally accepted 22,114. Are the effects of mdia1 and FRL1 on MTOC re-orientation in T cells related to their effects on actin dynamics? Suppression of either formin alone inhibits re-orientation 23, and the formins localize in different patterns at the MTOC, suggesting distinct roles. One study suggests that the FH2 domain is required for mdia1-mediated effects on microtubules 115, which suggests a link to actin. However, the FH2 domain is also sufficient for the interaction of mdia2 with microtubule-binding proteins 113, and the FH2 domain of mdia1 can interact directly with microtubules (E.S.C. and H.N.H., unpublished observations; F. Bartolini and G. Gundersen, Columbia University, New York, NY, unpublished observations). It is not currently known whether actin filaments colocalize with mdia1 or FRL1 at the MTOC in T cells, although these may be difficult to detect. One final point is that the two effects of formins on microtubules (stabilization and MTOC repositioning) may involve distinct mechanisms, as they presumably occur at different ends of microtubules. Adherens junctions. Adherens junctions are cell cell adhesions mediated by homophilic interaction of cadherins: their core components are the transmembrane cadherin and two cytoplasmic proteins, β-catenin and α- catenin 116,117. The long-accepted model is that mature adherens junctions in epithelial cells are associated with a circumferential band of actin and myosin II that is contractile and runs parallel to the membrane 118. This band of actin filaments is relatively stable, and the actin adherens junctions interaction is mediated by α-catenin, bound to β-catenin, which is bound to cadherin. However, new results call this model into question: first, α-catenin cannot bind β-catenin and actin filaments simultaneously in vitro 119 ; second, actin filaments are much more dynamic than cadherins or catenins at the adherens junctions 119 ; and third, factors other than core adherens junction components seem to link junctions to actin 120,121. Therefore, our image of the mature adherens junction may well change over the next few years. However, it is clear that extensive actin dynamics are required to assemble the mature structure. Cells approach each other by extension of sheet-like membrane protrusions 122. On initial contact, the two interacting cells extend actin-rich finger-like protrusions toward each other, with cadherin concentrated at the tips These protrusions interdigitate and then shorten as the junction matures, bringing the two cell membranes closer. The initial sheet-like protrusions are likely to be lamellipodia or lamella, although it is less clear whether the finger-like protrusions are filopodia-like 124 or more like an acto-myosin contractile structure 126. Clearly, myosin II is important for adherens junction assembly, but its localization has not been determined at high resolution. There is evidence that both the Arp2/3 complex and formins participate in adherens junctions assembly. The Arp2/3 complex localizes to sites of junction assembly 127 and its inhibition disrupts this process 127,128, although it is unclear whether this may be due to general inhibition of 1118 nature cell biology volume 9 number 10 OCTOBER 2007