GIST: imatinib and beyond

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GIST: imatinib and beyond Clinical activity of BLU-285 in advanced gastrointestinal stromal tumor (GIST) Michael Heinrich 1, Robin Jones 2, Margaret von Mehren 3, Patrick Schoffski 4, Sebastian Bauer 5, Olivier Mir 6, Philippe Cassier 7, Ferry Eskens 8, Hongliang Shi 9, Terri Alvarez-Diez 9, Oleg Schmidt-Kittler 9, Mary Ellen Healy 9, Beni Wolf 9, Suzanne George 10 1 Oregon Health & Sciences University, Oregon, USA; 2 Royal Marsden Hospital/Institute of Cancer Research, London, UK; 3 Fox Chase Cancer Center, Pennsylvania, USA; 4 Leuven Cancer Institute, Leuven, Belgium; 5 University of Essen, Essen, Germany; 6 Institut Gustave Roussy, Paris, France; 7 Centre Leon Berard, Lyon, France; 8 Erasmus MC Cancer Institute, Rotterdam, Netherlands; 9 Blueprint Medicines Corporation, Massachusetts, USA; 10 Dana-Farber Cancer Institute, Massachusetts, USA Abstract no: 11011 Presented by: Dr. Michael Heinrich

Disclosures BLU-285 is an investigational agent currently in development by Blueprint Medicines Corporation (Blueprint Medicines) Dr. Michael Heinrich is an investigator for Blueprint Medicines ongoing Phase 1 studies in unresectable gastrointestinal stromal tumor Dr. Michael Heinrich has the following disclosures: Consultant: Blueprint Medicines, Novartis, MolecularMD Equity interest: MolecularMD Research funding: Blueprint Medicines, Deciphera, Ariad Expert testimony: Novartis Patents: four patents on diagnosis and treatment of PDGFR -mutant GIST 2

Imatinib revolutionized Gastrointestinal Stromal Tumor (GIST) treatment KIT Exons 9 11 PDGFR 12 Domains Extracellular Transmembrane Juxtamembrane Inactive conformation KIT Active conformation 13 Kinase-1 imatinib 17/18 18 Kinase-2 (activation loop) imatinib Mutational hotspots Primary Resistance A-loop A-loop KIT mutations drive ~75 80% of GIST PDGFR mutations drive ~5 10% of GIST Imatinib binds the inactive kinase conformation and inhibits many primary mutants Imatinib is a highly effective first-line GIST therapy 3

Beyond imatinib, there are no highly effective therapies 1 6 Primary resistance Secondary resistance 1L imatinib ORR ~60% PFS 19 mo 2L sunitinib ORR ~7% PFS 6 mo 3L regorafenib ORR ~5% PFS 4.8 mo 4L no approved therapy ORR ~0% PFS 1.8 mo * Prevalence 7,8 Resistance mutation Primary Secondary PDGFRα D842V ~5 6% Rare KIT exon 17/18 ~1% 2L ~23% 3L ~90% KIT exon 13 N/A 2L ~40% Primary and secondary mutations cause therapeutic resistance Approved agents are ineffective against PDGFRα D842V *Imatinib re-challenged 4

BLU-285: highly potent and selective targeting of KIT/PDGFR GIST mutants High kinome selectivity* BLU-285 Binds active conformation *Image reproduced courtesy of CSTI (www.cellsignal.com) 5

BLU-285: highly active against imatinib-resistant GIST patient derived xenografts KIT exon 11/17 mutant KIT exon 11/13 mutant Tumor regression at 10 and 30 mg/kg QD Tumor regression at 30 mg/kg QD 6

BLU-285 Phase 1 study Key objectives Part 1: MTD, safety, pharmacokinetics, ctdna analyses, anti-tumor activity Part 2: response rate, duration of response, safety Part 1 Dose escalation completed Advanced GIST MTD 3+3 design with enrichment Dose levels: 30, 60, 90, 135, 200, 300, 400 and 600 mg QD MTD determined to be 400 mg PO QD Part 2 Dose expansion enrolling PDGFR D842V-mutant GIST (n=50) Unresectable GIST after imatinib and 1 other TKI (n=50) 7

Demography and baseline patient characteristics Parameter All patients, N=72 Age (years), median (range) 61 (25 85) GIST subtype KIT mutant PDGFR mutant n (%) 40 (56) 32 (44) Metastatic disease 69 (96) Largest target lesion size (cm) 5 >5 10 >10 No. prior kinase inhibitors Median (range) 3 Prior regorafenib Data are preliminary and based on a cut off date of 28 April 2017 PDGFR 1.5 (0 6) 10 (31) 8 (25) 18 (25) 25 (35) 29 (40) KIT 4 (2 11) 36 (90) 34 (85) 8

BLU-285 pharmacokinetics support QD dosing and broad mutational coverage Relatively rapid absorption Tmax ~2 8 hours and long half-life >24 hours *includes escalation and expansion data Exposure at the 300 and 400 (MTD) mg provides broad coverage of primary and secondary KIT/PDGFR mutations based on patient derived xenografts (PDX) 9

Radiographic response per RECIST 1.1 in PDGFR D842V-mutant GIST BLU-285 300 mg (dose escalation) Target lesion resolution BLU-285 400 mg (dose expansion) Target lesion resolution Baseline After 4 months Baseline After 2 months Ongoing at cycle 5 Prior imatinib and sunitinib Confirmed PR, -63% target sum Ongoing at cycle 3 Prior imatinib PR (pending confirmation), -85% target sum 10

Tumor regression across all dose levels in PDGFR D842-mutant GIST (central radiology review) 11

High response rate and prolonged PFS in PDGFR D842-mutant GIST Best response (N=25) Central radiographic review Choi Criteria n (%) RECIST 1.1 n (%) PR 25 (100%) 15* (60%) SD 0 10 (40%) DCR (PR + SD) 25 (100%) 25 (100%) PD 0 0 * 12 confirmed, 3 pending confirmation Approved agents are ineffective 1,2 ORR ~0% 12

Radiographic response in heavily pre-treated KIT-mutant GIST BLU-285 300 mg (dose escalation) BLU-285 400 mg (dose expansion) Screening Cycle 3 Screening Cycle 3 Cycle 5 Cycle 7 Ongoing at cycle 12 6 prior TKIs; exon 11, 13, and 18 mutations CHOI PR (density -53%); RECIST SD (-21%) Ongoing at cycle 4 5 prior TKIs; 1 exon 11 mutation; ctdna pending CHOI PR (density -76%); RECIST PR (-41%) 13

Dose-dependent tumor reduction across multiple KIT genotypes (central radiographic review) *ctdna results pending **per archival tumor and ctdna 14

Important clinical activity in heavily pre-treated KIT-mutant GIST Central radiographic review PFS with BLU-285 300 mg Best response (N=25) Choi Criteria n (%) * 1 confirmed, 1 pending confirmation RECIST 1.1 n (%) PR 8 (32) 2* (8) SD 6 (24) 12 (48) DCR (PR + SD) 14 (56) 14 (56) PD 11 (44) 11 (44) Beyond third-line regorafenib there are no approved therapies Imatinib re-treatment in third-line GIST 3 ORR ~0% 15

Adverse events (AE) associated with BLU-285 Safety population, N=72 Severity, n (%) AEs in 20% of patients n (%) Grade 1 Grade 2 Grade 3 Grade 4/5 Nausea 43 (60) 31 (43) 9 (13) 3 (4) 0 Fatigue 38 (53) 16 (22) 16 (22) 6 (8) 0 Vomiting 30 (42) 21 (29) 6 (8) 3 (4) 0 Periorbital edema 26 (36) 22 (31) 4 (6) 0 0 Diarrhea 24 (33) 19 (26) 4 (6) 1 (1) 0 Edema peripheral 22 (31) 18 (25) 4 (6) 0 0 Decreased appetite 20 (28) 15 (21) 4 (6) 1 (1) 0 Anemia 18 (25) 4 ( 6) 8 (11) 6 (8) 0 Lacrimation increased 17 (24) 12 (17) 5 (7) 0 0 Dizziness 16 (22) 13 (18) 3 (4) 0 0 18 (25%) patients had Grade (G) 3 treatment-related (Fatigue [8%], hypophosphatemia [6%], anemia [4%], nausea, vomiting, hyperbilirubinemia [3% each]) DLT in 2 patients at 600 mg: 1 G2 hyperbilirubinemia; 1 G2 rash, hypertension, memory impairment BLU-285 discontinuations: disease progression n=19, treatment-related toxicity (G3 hyperbilirubinemia) n=1, and investigator s decision n=1 16

Conclusions BLU-285 is well tolerated on a QD schedule at doses up to the MTD of 400 mg Exposure at 300 400 mg QD provides broad coverage of primary and secondary KIT / PDGFR mutants BLU-285 has strong clinical activity in PDGFR D842-mutant GIST with an ORR of 60% per central review and median PFS not reached Potential expedited paths for approval are being evaluated BLU-285 demonstrates important anti-tumor activity including radiographic response and prolonged PFS in heavily pre-treated, KIT-mutant GIST at doses of 300 400 mg QD Based on these encouraging data, planning is underway for a Phase 3 randomized study of BLU-285 in third-line GIST 17

Acknowledgments We thank the participating patients, their families, all study co-investigators, and research coordinators at the following institutions: Oregon Health & Sciences University Royal Marsden Hospital/Institute for Cancer Research Leuven Cancer Institute University of Essen Fox Chase Cancer Center Erasmus MC Cancer Institute Centre Leon Berard Institut Gustave Roussy Dana-Farber Cancer Institute We also thank Sarah Jackson, PhD, of imed Comms, an Ashfield company, who provided editorial writing support funded by Blueprint Medicines 18

References 1. Cassier et al. Clin Cancer Res. 2012;18(16):4458 64 2. Yoo et al. Cancer Res Treat. 2016;48(2):546 52 3. Kang et al. Lancet Oncol. 2013;14(12):1175 82 4. National Comprehensive Cancer Network. Gastrointestinal Stromal Tumors. 2016 5. Demetri et al. Lancet. 2006;368:1329 6. Demetri et al. Lancet. 2013;381:295-302 7. Corless et al. J Clin Oncol. 2005;23:5357 8. Barnett and Heinrich. Am Soc Clin Onc Ed Book. 2012;663 19