Calcineurin Cellular Activity Assay Kit, Colorimetric Cat. No

User Protocol 207007 Rev. 27-July-04 JSW Page 1 of 9 Calcineurin Cellular Activity Assay Kit, Colorimetric Cat. No. 207007 Introduction Calcineurin (CaN) is a neuronal form of the widely distributed Ca 2+ /calmodulin-dependent Ser/Thr protein phosphatase 2B (PP-2B). CaN is a heterodimer consisting of a catalytic A subunit (57 61 kda) and a regulatory B subunit (19 kda). The catalytic A subunit is composed of four functional domains: the catalytic core with sequence homology to PP-1 and PP-2A; binding sites for both calmodulin and CaNregulatory subunit, and a C-terminal autoinhibitory domain. The CALBIOCHEM Calcineurin Cellular Activity Assay Kit is a complete colorimetric assay kit for measuring cellular calcineurin (PP-2B) phosphatase activity. It employs a convenient 96-well microtiter plate format with all reagents necessary for measuring calcineurin phosphatase activity in tissue/cellular extracts. Human recombinant calcineurin is included as a positive control. The RII phosphopeptide substrate, supplied with this kit is the most efficient and outstanding peptide substrate known for calcineurin. The detection of free phosphate released is based on the malachite green assay and offers the following advantages: non-radioactive, convenient one-step detection, and excellent sensitivity. Refs.: Mondragon, A., et al. 1997. Biochemistry 36, 4934; Donella-Deana, A., et al. 1994. Eur. J. Biochem. 219, 109; Enz, A., et al. 1994. Anal. Biochem. 216, 147; Harder, K.W., et al. 1994. Biochem. J. 298, 395; Martin, M., et al. 1985. J. Biol. Chem. 260, 14932. COMPONENTS NOTE: Store all components except the microtiter plate at 70 C for the highest stability. The calcineurin enzyme component must be handled particularly carefully in order to retain maximal enzymatic activity. Thaw it quickly in a room temperature water bath or by rubbing between your fingers, then immediately store on ice. The remaining unused enzyme should be quickly refrozen by placing at 70 C. To minimize the number of freeze/thaw cycles, aliquot the calcineurin into separate tubes and store at 70 C. Calcineurin, Human, Recombinant, 500 U. Activity: 50 U/µl in 1X assay buffer. One unit is equal to 1 pmol per minute at 30 C. Storage at 70 C. AVOID FREEZE/THAW CYCLES. Calmodulin, Bovine Brain, 100 µl. Supplied in 25 µm in H 2 O. Storage at 70 C. AVOID FREEZE/THAW CYCLES. RII Phosphopeptide (Asp-Leu-Asp-Val-Pro-Ile-Pro-Gly-Arg-Phe-Asp-Arg-Arg-Val-pSer-Val-Ala-Ala- Glu), 3 x 500 µg. Each vial contains 500 µg net peptide plus salt. Store at 70 C. 2X Assay Buffer, 20 ml. Supplied as 200 mm NaCl, 100 mm Tris, 12 mm MgCl 2, 1 mm CaCl 2, 1 mm DTT, 0.05% NP-40, ph 7.5. Store at 70 C. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 2 of 9 2X EGTA Buffer, 1ml. Supplied as 200 mm NaCl, 100 mm Tris, 20 mm EGTA, 12 mm MgCl 2, 1 mm DTT, 0.05% NP-40, ph 7.5. Store at 70 C. Lysis Buffer, 2 x 20 ml. Supplied as 50 mm Tris, 1 mm DTT, 100 µm EDTA, 100 µm EGTA, 0.2% NP- 40, ph 7.5. Store at 70 C. Protease Inhibitor Cocktail, 2 tablets. Store at 70 C (can be stored at +4 C). GREEN Reagent, 20 ml. Liquid. Store at 70 C (can be stored at +4 C short-term). Phosphate Standard, 500 µl. Supplied as 80 µm in distilled H 2 O. Store at 70 C. Okadaic Acid, 325 µl. Supplied as 5 µm in 2X assay buffer. Store at 70 C. WARNING! LD 50 of < 200 mg/kg. May be carcinogenic/teratogenic. Desalting Column Resin, 1 g. Supplied as a white powder in a 15 ml conical tube (P6 DG desalting resin). Store at room temperature. After re-hydration, store at +4 C. Chromatography Column, 1 x 5 ml column. Supplied as a 5 ml polypropylene disposable column. Store at room temperature. ½ Volume Microtiter Plate. Store at room temperature. Other Materials Required by not Provided: Microtiter plate reader capable of measuring A 620 to 3-decimal accuracy. Centrifuge capable of 100,000 x g RCF. Swing bucket centrifuge capable of 800 x g RCF. Pipettor capable of pipetting 5 100 µl accurately. Multi-channel pipettor capable of pipetting 100 µl (optional). Ice bucket to keep reagents cold until use. 16 gauge needle or syringe. TBS buffer, 100 ml (150 mm NaCl, 20 mm Tris, ph 7.2) 15 ml conical centrifuge tubes Biological test materials (e.g., tissue, cells) Experimental methods NOTE: Keep all samples in an ice bath until use, unless otherwise noted. PRECAUTIONS. The GREEN reagent is a highly sensitive phosphate detection solution. Free phosphate present on labware and in reagent solutions will greatly increase the background absorbance of the assay. This is detected visually as a change in color from yellow to green. Detergents used to clean labware may contain high levels of phosphate. Use caution by either rinsing labware with distilled H 2 O or employ unused plasticware. Do not use phosphate buffered saline (PBS) for any tissue/cell rinses, instead use TBS (Tris-buffered saline). A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 3 of 9 Preparation of Tissue/Cell Extracts To prepare a tissue/cell extract for calcineurin activity assay: NOTE ON BIOLOGICAL SAMPLE MATERIAL: The following procedures have been tested for rat and mouse brain tissue. Other tissue or cell culture samples employed may require adjustment of this protocol for satisfactory results. 1. Add protease inhibitor tablets to lysis buffer immediately before use (1 tablet per 10 ml buffer). Vortex. 2. Obtain tissue, if fresh, excise quickly. 3. Rinse tissue quickly in ice-cold TBS and shake off/blot excess wetness. 4. Weigh the tissue in a centrifuge tube. 5. Add lysis buffer with protease inhibitor to tissue. Use 0.33 0.5 ml per gram of tissue. 6. Loosely break up cells by passing them through a 16 gauge needle. Avoid air bubbles. 7. Sediment at 100,000 200,000 x g in a centrifuge at +4 C for 45 minutes. Save the supernatant and label as HSS (high speed supernatant). 8. Freeze immediately at 70 C Removal of Free Phosphate from Extracts: To desalt tissue samples by gel filtration: NOTE: This procedure is intended to remove excess phosphate and nucleotides (which are slowly hydrolyzed to release free phosphate in the presence of the GREEN reagent) in the high speed supernatant (HSS) extract. 1. Re-hydrate desalting column resin in a 50 ml conical tube by adding 20 ml of phosphate-free distilled H 2 O. Vortex briefly. Allow to set for 4 hours at room temperature or overnight at +4 C. 2. Decant the distilled H 2 O carefully. Then add fresh distilled H 2 O at a 1:1 ratio to the re-hydrated resin (~10 ml). 3. Add re-hydrated resin to the chromatography column to obtain a 5 ml settled-bed volume (~5.5 cm bed height). Remove the tip from the column and allow the H 2 O to drain by gravity. 4. Equilibrate the column by adding 8 ml of lysis buffer and allow to drain by gravity. 5. Place column in a 15 ml centrifuge tube. Centrifuge at 800 x g for 3 minutes at +4 C to displace column buffer. Discard flow-through buffer. 6. Place column in a clean 15 ml centrifuge tube. 7. Add up to 350 µl HSS sample, as prepared previously, to the column. 8. Centrifuge at 800 x g for 3 minutes. Save extract flow-through. This is the desalted cell lysate material to be tested for calcineurin activity, as outlined below. 9. Freeze sample immediately at 70 C. NOTE: The effective removal of phosphate/nucleotides from the extract should be tested qualitatively by adding 100 µl GREEN reagent to 1 µl extract and a separate sample of 1 µl distilled H 2 O. If no phosphate/nucleotides are present, both samples should remain yellow in color over a time period of 30 minutes at room temperature. The development of a visible green color indicates phosphate contamination, which must be eliminated from the samples before proceeding further. The resin can be re-used by rinsing with phosphate free water between samples. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 4 of 9 The flow-through can be tested for phosphate by adding green reagent. The flow-through will remain yellow when all phosphates have been removed from the column. GREEN Phosphatase Assay To prepare the reagents for the assay: 1. Thaw all kit components and hold on ice bath, except for the GREEN reagent, which is kept at room temperature. 2. Add calmodulin to the 2X assay buffer. Dilute calmodulin 1:50 in 2X assay buffer to the required quantity (25 µl are required per assay well). For example, add 20 µl to 980 µl 2X assay buffer. 3. Reconstitute substrate (RII phosphopeptide) with distilled H 2 O to 305 µl per 0.5 mg vial. This would yield a final peptide concentration of 1.64 mg/ml or 750 µm (10 µl are needed per assay well). To prepare phosphate standard curve sample wells: 1. Prepare 1:1 serial dilutions of phosphate standard plus a distilled H 2 O blank ( 25 µl per well). Dilutions of 80, 40, 20, 10, 5, 2.5, and 1.25 µm correspond to 2, 1, 0.5, 0.25, 0.125, 0.063, and 0.031 nmol PO 4. (see Table 1). a. Add 50 µl of 80 µm phosphate standard to well #1 of microtiter plate. b. Add 25 µl distilled H 2 O to wells 2 8. c. Remove 25 µl from well 1 and add it to well 2. d. Mix thoroughly and repeat for wells 3 7. At well 7, remove 25 µl and discard. DO NOT PROCEED TO WELL 8. THIS IS THE DISTILLED H 2 O BLANK. 2. Add 25 µl 2X assay buffer to each well of the standard curve, wells 1-8 (final volume = 50 µl). To prepare the calcineurin activity assay sample wells: (See tables 1 and 2) Background (no substrate): (Control for background phosphate/interfering substances) 1. Add 20 µl distilled H 2 O to appropriate wells. Add 25 µl 2X assay buffer with calmodulin to each well. Total phosphatase activity wells: (Total phosphatase activity in the extract) 1. Add 10 µl dh 2 O to each well. 2. Add 25 µl 2X assay buffer with calmodulin to each well. EGTA buffer (Ca 2+ /CaM Free): [Total activity less PP-2B (Calcineurin)] 1. Add 10 µl dh 2 O to each well. 2. Add 25 µl 2X EGTA buffer to each well. Okadaic acid: (Total activity less PP-1 and PP-2A) 1. Add 5 µl dh 2 O to each well. 2. Add 25 µl 2X assay buffer with calmodulin to each well. 3. Add 5 µl okadaic acid. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 5 of 9 Okadaic acid + EGTA (Total activity less PP-1, PP-2A, and PP-2B) 1. Add 5 µl dh 2 O to each well. 2. Add 25 µl 2X EGTA buffer to each well. 3. Add 5 µl okadaic acid. Positive control (calcineurin enzyme) (Purified CaN enzyme positive control) 1. Add 10 µl dh 2 O to each well. 2. Add 25 µl 2X assay buffer with calmodulin to each well. Add Phosphopeptide Substrate: 3. Add 10 µl phosphopeptide to each well of the calcineurin samples except the background control. DO NOT ADD SUBSTRATE TO THE PHOSPHATE STANDARD CURVE SAMPLES. 4. Equilibrate microtiter plate to reaction temperature (e.g., 30 C) for 10 minutes. To initiate the calcineurin assay: 5. Add 5 µl extract or calcineurin (dilute to 8U/µl prior to use) to appropriate wells. For sample extract wells, it may be necessary to dilute the HSS tissue extract (e.g., 1:5 1:10 in lysis buffer). For calcineurin positive control, add 5 µl of calcineurin enzyme (40 U/well). 6. Incubate the plate at reaction temperature for desired duration (e.g., 30 minutes at 30 C). To terminate the reactions: 7. After incubating wells for desired duration, terminate reactions by adding 100 µl GREEN reagent to ALL samples including the phosphate standard curve. 8. Allow color to develop 20 30 minutes, making sure all wells spend approximately the same time with the reagent before reading on microplate reader. 9. Read A 620 on microtiter plate reader. Perform data analysis as indicated below. Table 1. Example of Microtiter Plate Samples. Sample* Standard Curve Extract/CaN Samples Well # 2 nmol PO 4 4,5 A 2 Background B 1 total C 0.5 EGTA Buffer D 0.25 Okadaic Acid (OA) E 0.125 OA + EGTA F 0.063 Positive Control G 0.031 H 0 *For highest accuracy, perform all samples in duplicate. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 6 of 9 Table 2. Typical Assay Components H2O 2X Assay Buffer + CaM 2X EGTA Buffer Okadaic Acid Substrate, 0.75 mm Extract/ CaN Background 20 µl 25 µl 0 µl 0 µl 0 µl 5 µl Total 10 µl 25 µl 0 µl 0 µl 10 µl 5 µl EGTA Buffer 10 µl 0 µl 25 µl 0 µl 10 µl 5 µl Okadaic Acid 5 µl 25 µl 0 µl 5 µl 10 µl 5 µl (OA) OA + EGTA 5 µl 0 µl 25 µl 5 µl 10 µl 5 µl Positive Control 10 µl 25 µl 0 µl 0 µl 10 µl 5 µl Data Analysis Phosphate (PO 4 ) standard curve: 1. Plot standard curve data as A 620 versus nmol PO 4 (see Figure 1). 2. Obtain a line-fit to the data using an appropriate routine 3. Use the slope and the Y-intercept to calculate amount of phosphate released for the experimental data. NOTE: For highest accuracy, a standard curve must be performed for each new set of assay data. This will normalize for variations in free phosphate in samples, time of incubation with the GREEN Reagent, and other experimental factors. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 7 of 9 Conversion of A 620 to amount of phosphate released 1. Convert A 620 data line into the amount of phosphate released using the standard curve line-fit data from above: Phosphate released = (A 620 Y int )/slope Example: Standard Curve Slope = 0.3 A 620 /nmol phosphate Standard Curve Y int = 0.01 Sample A 620 = 0.4 Phosphate released = (0.4 0.001)/0.3 = 1.33 nmol Data Reduction to Determine Calcineurin Phosphatase PRECAUTIONS: The procedures for data analysis that follows are intended only as a guideline. The individual user must determine the suitability of this analysis for their particular experimental protocol. Additional controls and other samples may be appropriate for accurate analysis. ANALYSIS DESCRIPTION: This assay uses RII phosphopeptide, the most well-known substrate for PP- 2B. Nonetheless, in cellular extracts, the phospho-group is cleaved by other competing phosphatases. Thus, a series of conditions must be employed to discriminate between PP2B activity and that of other phosphatases. CaN requires calcium for its activity, thus the EGTA buffer sample represents total phosphatase activity less CaN. Okadaic Acid at 100 and 500 nm is known to completely inhibit PP-1 and PP-2A, while it has no effect on CaN (see Figure 3). Finally, okadaic acid + EGTA buffer inhibits PP-1, PP-2A, and PP-2B, but not PP-2C. Thus for a given biological system, the analysis of these samples allow for the quantification of calcineurin activity in a cellular extract. Additional experimental modulation of the cellular extracts may be desirable. Inhibitors of calcineurin, calmodulin, and calcium ion modulations may be appropriate. Calculation: 1. Subtract the background phosphate released from each sample except the positive control. 2. Plot a graph analogous to Figure 2. Use either A 620 or phosphate released for the Y-axis. 3. Determine the contribution of calcineurin; eq. 1 CaN (PP-2B) = Total EGTA Buffer or eq. 2 CaN (PP-2B) = OA - (OA + EGTA) Eq. 1 is a conventional method to report CaN activity. However, the user must determine the most appropriate analysis for their specific experimental goal. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 8 of 9 Figure 2: Cellular Calcineurin (CaN) Assay using Mouse Brain. Phosphatase activity from freshly prepared mouse brain extract. Prior to gel filtration, the extract was diluted 1:1 in lysis buffer containing protease inhibitors. After gel filtration and prior to the phosphatase assay, the extract was diluted 1/25 in lysis buffer. Well contents were as in Table 2. The reaction was incubated for 30 minutes at +30 C. Figure 3. Calcineurin (CaN) Positive Control. The CaN was incubated 1 hour at +30 C under various buffer conditions. The results demonstrate that CaN activity is inhibited by the EGTA buffer, but not inhibited by 100 nm or 500 nm concentrations of okadaic acid. A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,

User Protocol 207007 Rev. 27-July-04 JSW Page 9 of 9 References: 1. Klee, C.B., et al. 1998. J. Biol. Chem. 273, 13367. 2. Stemmer, P.M., et al. 1995. FEBS Lett. 374, 237. 3. Wang, X., et al. 1996. Nature 383, 434. 4. Mondragon, A., et al. 1997. Biochem. 36, 4934. 5. Fruman, D.A., et al. 1996. Methods: A companion to Methods Enzymol. 9, 146. GREEN Phosphate Standard Curve A Brand of EMD Biosciences, Inc., an Affiliate of Merck KGaA, Darmstadt,