Advances in CF therapies and their effect on GI manifestations. Presenter Disclosure Daniel Gelfond, MD Relationship related to this presentation

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Advances in CF therapies and their effect on GI manifestations Daniel Gelfond, MD University of Rochester WNY Pediatric Gastroenterology Presenter Disclosure Daniel Gelfond, MD Relationship related to this presentation Cystic Fibrosis Foundation Therapeutics grant support Vertex- Medical advisory board, consultant Learning Objectives Outline pathophysiology of CF and impact of CFTR on clinical manifestations Recognize gastrointestinal manifestations of CF and therapeutic interventions Outline recent development and advances in CF therapy targeting specific genetic mutations Discuss role of Wireless Motility Capsule (WMC) as gastrointestinal biomarker of CFTR activity 1

Pathophysiology of Cystic Fibrosis Cystic fibrosis (CF) is a disease of dysfunctional Cystic Fibrosis Transmembrane Regulator protein (CFTR) inherited in autosomal recessive pattern (chromosome 7) Channel controlling flow of Cl -, H 2 O, HCO 3 - Dysregulation of fluid transport, increased viscocity in pulmonary, gastrointestinal (enteric, liver, pancreas) and reproductive organs ph control through bicarbonate regulation ~ 2000 CFTR mutations identified 127 are CF causing mutations (www.cfrt2.org) (F508del ~88%) 11 mutations in US with a frequency of >1% 23 mutation with a frequency of >0.1% Severity of the mutations are based on the underlying mechanism causing CFTR dysfunction Adopted from www.cftrscience.com/?q=epidemiology Classification of CFTR dysfunction Class I Defective production Class II Defective processing F508del Class III Defective Regulation (Gating defect) G551D Class IV Defective conductance Class V Reduced amount DEFECTIVE PROCESSING REDUCED FUNCTION Adopted from Rowe SM et al., New Engl J Med 2005 2

How are organs affected by CFTR? Primary (luminal obstruction): Skin (sweat gland) Lung involvement with obstructive / restrictive respiratory disease Gut involvement CFTR present in a cephalad-caudal & crypt-villus gradient Reproductive tract Scondary (parencymal involvement): Alveoli, pancreatic acini Hepatic tissue CFTR drives bicarbonate (HCO 3- ) secretion Drives ionic content & fluid flux on epithelial surfaces Facilitates dense mucins secreted by goblet cells to unfold by changing ph and interfering with Ca + to become slippery Contribution to innate immunity Trap microorganisms and facilitate defensins reaching the lumen Antimicrobial protein activity is optimized at neutral ph Duodenum large volume of bicarbonate secretions from mucosal epithelium, Brunners glands, ductal epithelium of pancreatic and biliary tracts is required to neutralize gastric acid Pancreatic enzymes activity is ph dependent Micelle formation is ph dependent Borowitz, Pediatr Pulmonolo2015 Oct;50 Suppl 40:2S4-S30 Impact of CFTR defect on GI ph Decreased bicarbonate secretion Lack of gastric buffering, leading to: Nutrient breakdown and absorption Enzymatic activities Precipitation of micelles Hydration of the mucosa Prolonged small bowel acidification Immune dysregulation altered microbiome 3

Boomerang of CF related GI disease Clinical features of CFTR dysfunction in GI tract precedes respiratory manifestations In utero onset with pancreatic destruction, early onset malabsorption, meconium ileus Aggressive nutritional intervention, PERT Patients no longer die of malnutrition Respiratory disease predominant cause of mortality Advancements in Respiratory therapy with antibiotics, new therapies improved life expectancy With improved overall survival and optimization of pulmonary therapy emphasis changes to GI related complications of CF disease Meconium Ileus (MI) Thick secre ons in fetus neonatal obstruc on Incidence 13 17% among CF newborns* More common common in infants with Class I III mutations (F508del, G542X, W1282X, R553X, G551D) Gene modifiers (4q35.1, 8p23.1, 11q25, 19q13) ** 53.5% of infants with MI are diagnosed with CF ** Proposed pathophysiology: Defective HCO 3 excretion in utero likely causes acidic and dehydrated luminal environment Not related to lack of pancreatic enzymes (CF mouse model with MI has normal pancreatic function) Treatment with enema irrigation vs. surgery *Curr Gastroenterol Rep (2011) 13:265 270 **Gorter, R, et. al. Journal of Pediatric Gastroenterology and Nutrition, 2010. 50(5): p. 569-572 Distal Intestinal Obstruction Syndrome (DIOS) Viscid fecal material with strong adhesion to villi and crypts of the mucosa in the TI No gene modifiers as seen in MI More common in patients with prior history of MI Possible pathophysiology: Combination of inherent deficiency of luminal bicarbonate along with altered motility and pancreatic insufficiency Prevalence 7 8% in children; 14 16% in adults 4

Intestinal segment of a CF patient with obstruction * Viscid fecal material with strong adhesions to the mucosa and crypts Yellow arrows = constipated goblet cells DIOS Abdominal pain, vomiting and distention with palpable right sided mass and complete or partial obstruction May mimic constipation & often occur concurrently Chronicity and distribution of stool on imaging May mimic appendicitis Incidence of appendicitis is NOT greater in CF vs. control Treatment mostly with osmotic stool laxatives (PEG) N-acetylcysteine may be used as a mucolytic PO / PR Gastrografin enema refluxed to terminal ileum Prevention: adherence to PERT and osmotic stool laxatives CF related Pancreatic disease Pancreatic Insufficiency (PI) 85% of CF patients cared for in US In utero destruction of the pancreas in ~60% of newborns Plasticity of pancreatic function in others may be an opportunity to improve and recover function with early intervention Basis of Immunoreactive trypsinogen (IRT) newborn screening Lifelong Pancreatic Enzyme Replacement Therapy (PERT) Pancreatic sufficiency (PS) 10-15% of CF subjects Usually have at least 1 Class IV or V mutation May develop PI At risk of developing pancreatitis 5

Small Bowel Bacterial Overgrowth Increased predisposition in CF patients Thick secretions Provide media for bacterial growth Obstrutc secretion of luminal defensins from Paneth cells Adhere to epithelial mucosa Malabsorbed nutrients Bacteria deconjugate bile acids Altered intestinal motility with slow transit in the small bowel = intestinal stasis # of bacterial organisms in the upper GI tract Chronic use of antibiotics Therapy with enteric antibiotics, osmotic laxatives, (?probiotics) Cystic Fibrosis Related Liver Disease (CFLD) Transient elevation of hepatic enzymes CFLD 50% of young children and infants with CF Normalizes within 2 3 years of age Spectrum of hepatobiliary disease Cholelithiasis, biliary tract ductal stones, microgallbladder Hepatic steatosis, nodular regenerative hyperplasia Focal biliary cirrhosis and portal hypertension Common GI diseases in CF patients GERD 6-8 fold greater in CF population Conventional therapy with acid suppression or more aggressive surgical interventions in complex disease Long term therapy to improve PERT availability Constipation Common in CF Increased incidence in CF population Inflammatory Bowel Disease (second hit hypothesis) Celiac disease 2-3 fold increase * (TTG might be false positive) Gastrointestinal cancer in organs with higher CFTR expression * Fluge G,. Co-morbidity of cystic fibrosis and celiac disease in Scandinavian cystic fibrosis patients. J Cyst Fibros 2009;8:198 202 6

Therapeutic approach to Class III Gating mutations Ivacaftor first mutation specific drug for CF (Approved by FDA Jan 12 for treatment of G551D, label now expanded to include other mutations) CFTR potentiator that improves ion channel activity Sweat Cl - Lung function and pulmonary exacerbations Improved nutritional status Ramsey et al., N Engl J Med. 2011 Nov 3;365(18):1663-72 Therapeutic approach to Class II Folding mutations Lumacaftor + Ivacaftor first combination therapy (approved by FDA July 15 for treatment of F508del/F508del) CFTR corrector + potentiator that improves ion channel activity lung function and pulmonary exacerbations No effect on sweat chloride Modest improvement in nutritional status Correcto r Wainwright et al., N Engl J Med. N Engl J Med. 2015 Jul 16;373(3):220-31 Adopted from Rowe SM et al., New Engl J Med 2005 GOAL Study Multicenter observational study of CF patients with G551D mutation before and after taking ivocaftor Clinical and QOL outcomes, biomarker collection Multiple sub-studies Nested study of Intestinal ph and motility Evaluate intestinal ph parameters (indirect measure of luminal bicarbonate) before and one month after therapy with ivacaftor Improvement of CFTR function hypothesized to improve CFTR dependent bicarbonate secretion 7

Wireless Motility Capsule (WMC) Ingestible capsule system that measures: ph Pressure Temperature Regional GI transit (Motility) Gastric (GET) Small Bowel (SBTT) Colonic (CTT) Whole Gut (WGTT) Sample Test Wireless Motility Capsule Study Ingestion = increased temperature Ileocecal transit = ph drop (delayed contractions) Gastric emptying = Increased ph Capsule exit = Loss of signal ± temperature drop Rise in the Temperature Ileocecal valve Gastric transit Capsule evacuation Rapid drop in the temperature Small Bowel transit Colon transit ph Gastric Emptying 8

Gastric Emptying WMC Tracing Delineation of Ileo-cecal transit With capsule entering colon: Change in ph (-1) Change in frequency of contractions ( ) Confirmation of Ileo-cecal transit Location: Pill near In through Small mid hepatic Terminal ascending Ileo-cecal Bowel flexure ileum colon Ph valve 6.4into ascending Ph Ph7.7.6 Ph colon Ph 7.6 7.5 WMC Tracing Adopted and modified from Jack Semler 9

Small bowel ph profile in CF vs. Healthy controls Deficient neutralization of gastric acid in CF subject Difference between mean ph values 2-22min (p<0.05) Time required to reach and sustain ph 5.5 and 6.0 (p<0.01) ph valued needed for dissolution of enteric coating of PERT 7 12.6 min 42.2 min 6 5.5 ph 5 6.3 min 17.7 min 4 CF Control 3 0 5 10 15 20 25 30 35 40 45 50 55 60 Gelfond et. al. Dig Dis Sci 2012;1 7. Time (Minutes) Normalization of intestinal ph with ivacaftor therapy 8 6 ph 4 2 Post Ivacaftor Pre Ivacaftor 0 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 105 110 115 120 Minutes from gastric emtpying Improvement of proximal SB ph [8-24min] (p<0.05) Time require to reach and sustain ph>5.5 Pre Ivacaftor 40 min; - Post Ivacaftor - 8 min (p<0.002) Average 1.1kg of weight gain (1 month) (p=0.08) Transit profiles in G551D subjects Time interval (hours) 60 40 20 0 Time interval (hours) 60 40 20 G551D pre and post Ivacaftor Pre Ivacaftor Post Ivacaftor GET SBTT SLBTT CTT WGTT 0 GET SBTT SLBTT CTT WGTT No change in transit profiles pre and post therapy ( 1 m) In contrast to CF vs Control observations with SB delay Longer duration of therapy? Transit Profile Hours 60 40 20 0 CF Control * p=0.004 CF vs Control Subjects Pre Ivacaftor Post Ivacaftor GET SBTT SLBTT CTT WGTT 10

Can intestinal ph evaluate or predict SBBO? Regional acidification of the luminal contents in the small bowel Bacterial fermentation Carbohydrate malabsorption?role of probiotics / Antibiotics Future directions Evaluate new modalities in the GI testing to guide clinical care and future research In vivo measurement of intestinal ph (HCO 3 ) as a biomarker of CFTR activity Verified in Patients with G551D on ivacaftor To be evaluated in F508del homozygotes on lumacaftor +ivacaftor Roles of CFTR therapy in non CF diseases Pancreatitis Intestinal dysmotility Translate lessons learned from CF animal models to patients 11