Methods used to diagnose lymphomas

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Institut für Pathologie Institut für Pathologie Methods used to diagnose lymphomas Prof. Dr.Med. Leticia Quintanilla-Fend

Molecular techniques NGS histology Cytology AS-PCR Sanger seq. MYC Immunohistochemistry BCL2 Clonality FISH

Immunohistochemical approach. Immunophenotyping in Lymphomas : As a surrogate marker of molecular changes Increases diagnostic accuracy Cell lineage determination B-cell NHL 73% to 87% Peripheral T-cell lymphomas from 41% to 86% Gives prognostic information

Surrogate marker of molecular changes Rearrangement of BCL-2 Follicular lymphoma Follicular Hyperplasia bcl-2 bcl-2 t (14;18)

Surrogate marker of molecular changes t (11;14) Northern blot cyclin D1 Rearrangement of BCL-1 Cyclin D1

ALK+ Anaplastic large cell lymphoma. NPM-ALK - t(2;5) Variant fusion protein

Hairy cell leukemia BRAF antibody BRAF

Immunohistochemical approach. Immunophenotyping in Lymphomas : As a surrogate marker of molecular changes Increases diagnostic accuracy B-cell NHL 73% to 87% Peripheral T-cell lymphomas from 41% to 86% Gives prognostic information

Diagnostic Accuracy in B-cell lymphomas Pan-B cell marker + Precursor B phenotype Mature B-cell phenotype CD5+, CD10- CD5-, CD10+ CD5-, CD10- Precursor B-ALL/LBL most MCL CLL rare DLBCL & MZL bcl2 + bcl2 - many FL some DLBCL some FL BL some DLBCL some MCL some FL some DLBCL

Precursor B-cell lymphoblastic/lymphoma CD20 Tdt

Lymphoid enhancer binding factor-1 (LEF-1) LEF-1 is expressed normally in T-cells LEF-1 is expressed by B-cell precursors and CLL but not in mature B-cells LEF1 is a transcription factor involved in the Wnt signaling pathway

Sox 11 expression in Mantle cell lymphoma Most MCL are positive including the cases of cyclin D1 negative (CycD1-,CD5+, Sox11+) Other Low grade lymphomas are negative Sox 11 Some Burkitt lymphoma, lymphoblastic lymphomas and T-prolylmphocytic leukemias are postive Mozos A et al. Haematologica 2009;94:1555-1562

Light chain restriction for clonality Kappa Lambda

Accuracy in the diagnosis of CHL

Accuracy in the diagnosis. Hodgkin lymphoma Immunophenotype CD30 + (100%) CD15 + (75-85%) CD20 - (weak positivity in a minority of tumor cells) PAX5 (90%) MUM1 LMP1 +/- Oct2 and BOB.1 - CD15 PAX5 CD30

1 2 PTCL, nos with RS-like cells Angioimmunoblastic T-cell lymphoma 3 4 Classical Hodgkin lymphoma T-cell rich large B-cell lymphoma CD20

Diagnostic Accuracy in T/NK-cell lymphomas Pan-T cell marker + NK cell marker + Precursor T phenotype Mature T-cell phenotype CD4+ CD8+/- CD56+, EBV+ AILT PTCL,nos ALCL,MF Precursor T-ALL/LBL CD30+ ALCL CD56 + CD56 - g/d cutaneous Hepatosplenic MEATL-2 SPTCL EATCL PTCL,nos NK/T-cell Nasal-type

Diagnostic accuracy. T-cell NHL CD3 CD7 CD2 CD5 CD43 Aberrant phenotype: loss of one or more T-cell markers

Biomarkers of cell lineage/differentiation TCRab TCRg

T FH cell markers for diagnostic use CD10 CXCL13 ICOS 2016 updated WHO classification PD1 bcl6 CD4 IHC or FCM Not a single marker is fully specific Expression of several T FH markers can be ICOS c-maf PD1 found in activated reactive cells (ICOS, PD1) In practice, BCL6 CXCL13 CD10 - at least, expression of 2 (3) TFH markers needed for TFH assessement - interprete in the pathological/clinical context Sens. Spec.

Biological Prognostic markers. Cell cycle p53, p27, ki-67, cyclins Apoptosis related molecules BCL-2, survivin Transcription factors MYC, NOTCH1 B-cell differentiation molecules BCL-6, CD10, CD5, Zap-70, Foxp-1, CD21 Other molecules ICAM, scd44, PD-L1

Techniques in molecular diagnosis Diagnostic ancillary methods FISH (fluorescence in situ hybridization) PCR based techniques Quantitative (Real-time PCR) Allele specific PCR (mutation detection) Qualitative (clonality analysis) Sequence analysis Next generation sequencing

Fluorescence in situ hybridization (FISH) Examine individual cells Detect heterogeneity within tumor cells Interphase FISH can be apply to paraffin-tissue Best method to detect translocations amplifications polisomy PIK3CA /Centromere 3 Metaphase Interphase Haralambieva et al, J Pathol 2002, 198:163

Fluorescence in situ hybridization (FISH) Break-apart FISH Fusion FISH Chromosome 11 Chromosome 14 Myeov Ea2 Enhancer a2 e1 MTC g4 g2 CCND1/ Cyclin D1 tel Chromosome 11 Break in chromosome 11 t(11;14) tel CCND1/ Cyclin D1 Em Enhancer Chromosome 14

Techniques in molecular diagnosis Diagnostic ancillary methods FISH (fluorescence in situ hybridization) PCR based techniques Quantitative (Real-time PCR) Allele specific PCR (mutation detection) Qualitative (clonality analysis) Sequence analysis Next generation sequencing Targeted amplification clonality

Cyclin D2+ Mantle cell lymphomas Real Time-PCR for Cyclin D2 t(2;12) CCND2 (12p13) and IGK (2p12) Quintanilla-Martinez et al., Hematologica 2010

Allelic specific PCR (mutation detection) AS-PCR with melting curve for mutations with hot spots. MYD88 mutation analysis (LPL) RHOA mutation analysis (AITL) Wild type MYD88 L265P Mutation Wild type RHOA G17V Mutation Schmidt J et al, BJH 2015, 169:795-803 Bonzheim I et al Blood 2015

TNFRSF14 mutations in PFL A) Ion AmpliSeq Custom Panel Coverage: 1336 Allele frequency: 16% PFL29 TNFRSF14 p.met1_gln97del B) Validation Sanger sequencing PFL29 TNFRSF14 Forward PFL29 TNFRSF14 Reverse

Clonality as marker of lymphoid neoplasia Immunoglobulin gene or T-cell receptor gene rearrangements Malignant vs. bening Cell lineage B vs T Diagnosis of residual disease For MRD specialized approaches (e.g. patient specific probes) required In disease Unique molecular fingerprint Determination of clonal relationship Transformation vs. second malignancy

IGH heavy chain clonality analysis Polyclonal pattern FR2 3-bp spacing Gaussian distribution Monoclonal peak FR3 Faint polyclonal background Automated fragment length analysis GeneScan

Benign vs. Malignant Polymorphous infiltrates in subcutaneous tissue Predominance of T-cells, rimming of fat cells 35-year-old woman, Subcutaneous nodules leukopenia -Monoclonal TCRg rearrangement

Discordant lymphomas 97 bp Bone marrow In 20% of the cases a second neoplasia is found! 85 bp Lymph node Kremer et al, Lab Invest 2003

Richter s transformation 60-year-old male, with history of CLL now with retroperitoneal lymphadenopathy, B-symptoms, lymphocytosis of PB 2008 2014 Mao, Quintanilla-Martinez et al, AJSP 2007

Approach to the diagnosis of discordant lymphomas Discordant lymphoma is not associated with an increase risk of CNS involvement

Molecular techniques NGS histology Cytology AS-PCR Sanger seq. MYC Immunohistochemistry BCL2 Clonality FISH