Initial Diagnosis and Treatment 81 Male

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Case SH2017-0359 Shiraz Fidai 1, Sandeep Gurbuxani 1, Girish Venkataraman 1, Gordana Raca 2, Madina Sukhanova 3, Michelle M Le Beau 3, Y. Lynn Wang 4, Mir Alikhan 4, Megan M.McNerney 4, Yuri Kobzev 4, Michael Thirman 5, John Anastasi 1, James W Vardiman 1, Elizabeth Hyjek 1 University of Chicago, 1 Dept. Pathology, Hematopathology Section, 3 Dept. Medicine, Hematology/Oncology Section, Cancer Cytogenetics Laboratory, 4 Dept. Pathology, Division of Genomic and Molecular Pathology. 5 Dept. Medicine, Hematology/Oncology Section, 2 Children s Hospital Los Angeles, Dept. Pathology & Lab Medicine, Clinical Cytogenomics Center for Personalized Medicine

Initial Diagnosis and Treatment 81 Male 2008 WBC 109 K/ul HGB 12 g/dl Plts 145 K/ul 2009 - FISH TP53 deletion negative Disomy for chromosome 12 ATM (11q22.3) del. negative Chromosome 13 del/ loss neg IGH translocation negative 2012 WBC 3.6 K/ul HGB 9.6 g/dl Plts 115 K/ul 95% monotypic B cell population: KAPPA+ IgM+/IgD+, CD19+, CD20+ CD5+, CD23+, FMC7-2010-2011 FCR (2010) Fludarabine Cyclophosphamide Rituximab BR (2011) Bendamustine Rituximab 57% monotypic B cell population: KAPPA+ IgM+/IgD+, CD19+, CD20+ CD5+, CD23+, FMC7-

2012 1 st Richter Transformation EBER CD20 PAX5 CD10 P53 C-MYC KI67 ZAP-70+ CLL area ZAP-70- RT area LAMBDA+ C-MYC+ IgM+/IgD+, CD19+, CD20+, CD10+, CD5-, CD38+, BCL2+, BCL6+ Cytogenetics: Complex karyotype with t(8;22) FISH: Positive for MYC rearrangement Treatment with EPOCH-R

CLL Progression and Ibrutinib 2013 - CLL Progression BM bx: Extensive CLL involvement KAPPA+ CD38+ ZAP-70+ FISH IGH translocation positive Trisomy 12 positive TP53 deletion positive ATM deletion negative Chr13 deletion and loss negative NGS and SNP analysis TP53 mutation Trisomy 12 17p deletion 18p deletion 2013 Ofatumomab 2014-2015 Ibrutinib Disease Improvement 2015 Post-Ibrutinib Therapy BM bx: Morphologic progression of CLL KAPPA+ CD38+ ZAP-70+ Cytogenetics Abnormal mosaic male karyotype NGS KRAS mutation BCOR deletion BCORL1 deletion BTK mutation

2015 2 nd Richter Transformation CD20 PAX5 CD5 CD10 MYC P53 ZAP-70 EBER KAPPA+ C-MYC+ CD10-, BCL2+, BCL6+, MUM1+, BCL2+,, ZAP-70+, ~100% KI67, P53+, EBER- RT2 Cytogenetics: Complex Karyotype with t(8;14) SLL/CLL FISH: Positive for MYC rearrangement Entospletinib ( GS-9973 SYK inhibtor) - Early 2016

Our Proposed Diagnosis: Chronic Lymphocytic Leukemia and Two Richter Transformations with MYC Rearrangement

Panel Requested Points Clonal relationship between CLL and two Richter transformations in our patient based on IGH gene rearrangement studies Clonal evolution of CLL and mechanism of Richter transformation Mechanism of disease recurrence or transformation associated with small molecules inhibitors used to treat this patient (Ibrutinib, GS- 9973 and ofatumomab) Clinical significance of clonally related vs unrelated Richter transformation to preceding CLL

Clonal Relationships Between CLL and Two RTs in Our Patient IG Heavy and Light Chain Gene Rearrangement Analysis (Biomed-2) IGH A mix IGH B mix IGH C mix IGK A mix IGK B mix Genetic Lesions RT1 2012 316 bp ~248 bp 114 bp 139 bp 286 bp 190 bp 250bp 280bp CLL RT2 RT2 2015 300 bp + 318 bp ~250 bp 114 bp 139 bp 286 bp 400 bp CLL 2015 300 bp + 318 bp ~250 bp 114 bp --- --- NGS & SNP: Same BTK C481S mutation present in both CLL & RT2 Richter transformation 2 (RT2) is clonally related to CLL Richter transformation 1 (RT1) is partially related to CLL and RT2

Core Cellular Pathways Affected by Significantly Mutated Genes in CLL Guieze R & Wu C. Blood 2015

Clonal Evolution of CLL and Mechanism of Richter Transformation Guieze R & Wu C. Blood 2015

Small Molecule Inhibitor - Ibrutinib Bruton s tyrosine kinase (BTK) Downstream activation of survival pathways: NFkB and MAP kinases Ibrutinib is orally active, small molecule BTK inhibitor that induces apoptosis in CLL cells Two different patterns of progression: Primary refractory disease or early progression histologic transformation OR Delayed CLL progression Hallek M. Am J Hematol 2017

Mechanisms of Ibrutinib Resistance and Transformation Events Resistance to Ibrutinib C481S mutation: Decreased Ibrutinib binding R665W and L845F mutations in PLCgamma2: gain of-function mutations leading to autonomous BCR activity Most cases of Ibrutinib-resistant CLL are often composed of multiple independent subclones Resistance mutations identified up to 15 months before progression Median survival following RT was 3.5 months and 17.6 months following CLL progression Ahn IE et al. Blood 2017

Clinical Significance of Clonally Related vs Unrelated RT Clonal relationship between CLL and DLBCL suggests 2 types of Richter Transformations: Richter transformation/dlbcl clonally related to CLL(~80% cases) Richter transformation/dlbcl clonally UNrelated to CLL(~20% cases) Clonally UNrelated RT - clinically and biologically distinct - outcome similar to de novo DLBCL Clonally UNrelated Clonally related TP53 disruption is one of the major factors affecting RT survival TP53 disruption and c-myc abnormalities are the most frequent genetic lesions in RT Analysis of sequential samples documented that TP53 disruption and c-myc abnormalities are frequently acquired at transformation Rossi D. Blood 2011; Seminars Oncology 2016

Final Panel Diagnosis: Chronic Lymphocytic Leukemia with Two Transformations to Diffuse Large B-cell Lymphoma (Richter's transformation, with MYC rearrangements)

References 1. Guieze R and Wu CJ. Genomic and epigenomic heterogeneity in chronic lymphocytic leukemia. Blood 2015;126(4): 445-53 2. Chigrinowa E et al. Two main genetic pathways lead to transformation of chronic lymphocytic leukemia to Richter syndrome. Blood 2013;122(1510:2673-2682. 3. Rossi D et al. The genetics of Richter syndrome reveals disease heterogeneity and predicts survival post-transformation. Blood 2011;117(12):3391-401 4. Hun YO et al. MYC translocation in chronic lymphocytic leukemia is associated with increased prolymphocytes and poor prognosis. Br. J Haematol 2008; 142: 36-44 5. Put N et al. Chronic lymphocytic leukemia and prolymphocytic leukemia with MYC trasnlocations: a subgroup with an aggressive disease course. Ann Hematol 2012; 91:863-873 6. Castillo J. Perez K. The role of Ofatumomab in the treatment of chronic lymphocytic leukemia resistant to previous therapies. J Blood med. 2010; 1;1-8. 7. Hallek M. Chronic lymphocytic leukemia 2017 update on diagnosis, risk stratification, and treatment. Am J hematol 2017; 92:946-965 8. Ahn IE et al. Clonal evolution leading to Ibrutinib resistance in chronic lymphocytic leukemia Blood 2017; 129(11): 1469-1479. 9. Mocsai A et al. The SYK tyrosine kinas: a crucial player in diverse biological functions. Nature Reviews 2010; 10 387-402 10. Sharman J et al. An open-label phase 2 trial of entospletinib (GS-9973), a selective spleen tyrosin kinase inhibitor, in chronic lymphocytic leukemia. Blood 2015; 125(15): 2336-2343.

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