Supplementary Figure 1. EC-specific Deletion of Snail1 Does Not Affect EC Apoptosis. (a,b) Cryo-sections of WT (a) and Snail1 LOF (b) embryos at

Similar documents
Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures and Supplementary Table.

(A) RT-PCR for components of the Shh/Gli pathway in normal fetus cell (MRC-5) and a

Supplementary Materials for

Supplementary Table 1. List of primers used in this study

Supplemental Figure 1. (A) The localization of Cre DNA recombinase in the testis of Cyp19a1-Cre mice was detected by immunohistchemical analyses

(a-r) Whole mount X-gal staining on a developmental time-course of hearts from

Supplementary Figure 1: Uncropped western blots for Figure 1B. Uncropped blots shown in Figure 1B, showing that NOTCH intracellular domain (NICD) is

Supplementary Fig. S1. Schematic diagram of minigenome segments.

File Name: Supplementary Information Description: Supplementary Figures and Supplementary Table. File Name: Peer Review File Description:

p = formed with HCI-001 p = Relative # of blood vessels that formed with HCI-002 Control Bevacizumab + 17AAG Bevacizumab 17AAG

SUPPLEMENTARY INFORMATION

Chapter 6. Villous Growth

Supplementary Figure 1. The CagA-dependent wound healing or transwell migration of gastric cancer cell. AGS cells transfected with vector control or

Supplementary Figure 1: Signaling centers contain few proliferating cells, express p21, and

Supplemental Figure 1. Western blot analysis indicated that MIF was detected in the fractions of

Figure S1. Reduction in glomerular mir-146a levels correlate with progression to higher albuminuria in diabetic patients.

Fig. S1. Upregulation of K18 and K14 mrna levels during ectoderm specification of hescs. Quantitative real-time PCR analysis of mrna levels of OCT4

Supplementary Materials for

Supplementary Figure 1. Characterization of ALDH-positive cell population in MCF-7 cells. (a) Expression level of stem cell markers in MCF-7 cells or

SUPPLEMENTARY INFORMATION

Supplementary Figure 1

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14-

Supplemental Figure 1. Intracranial transduction of a modified ptomo lentiviral vector in the mouse

Supplementary Figures

Endothelial PGC 1 - α 1 mediates vascular dysfunction in diabetes

Zhu et al, page 1. Supplementary Figures

Supplementary Figure 1. Characterization of NMuMG-ErbB2 and NIC breast cancer cells expressing shrnas targeting LPP. NMuMG-ErbB2 cells (a) and NIC

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable

SUPPLEMENTARY FIGURES AND TABLE

Supplementary Figure 1

Supplemental Information. Tissue Myeloid Progenitors Differentiate. into Pericytes through TGF-b Signaling. in Developing Skin Vasculature

Programmed necrosis, not apoptosis, is a key mediator of cell loss and DAMP-mediated inflammation in dsrna-induced retinal degeneration

AP VP DLP H&E. p-akt DLP

(a) Significant biological processes (upper panel) and disease biomarkers (lower panel)

T H E J O U R N A L O F C E L L B I O L O G Y

SUPPLEMENTARY INFORMATION

Supplementary Figure 1: Hsp60 / IEC mice are embryonically lethal (A) Light microscopic pictures show mouse embryos at developmental stage E12.

Figure S1. (A) Schematic diagram of dnrar transgene allele. (B) X-Gal staining of testis from

SUPPLEMENTARY INFORMATION

Boucher et al NCOMMS B

c Ischemia (30 min) Reperfusion (8 w) Supplementary Figure bp 300 bp Ischemia (30 min) Reperfusion (4 h) Dox 20 mg/kg i.p.

s u p p l e m e n ta ry i n f o r m at i o n

Supplementary Figure S1 Enlarged coronary artery branches in Edn1-knockout mice. a-d, Coronary angiography by ink injection in wild-type (a, b) and

Title: Epigenetic mechanisms underlying maternal diabetes-associated risk of congenital heart disease

SUPPLEMENTARY INFORMATION

label the basement membrane). Different fixation methods of EB-perfused P8 mice to optimize the combination

Supplementary Figure 1. Confocal immunofluorescence showing mitochondrial translocation of Drp1. Cardiomyocytes treated with H 2 O 2 were prestained

Supplementary Materials. for Garmy-Susini, et al, Integrin 4 1 signaling is required for lymphangiogenesis and tumor metastasis

Supplementary Materials for

SUPPLEMENTARY LEGENDS...

Supplementary Figures

marker. DAPI labels nuclei. Flies were 20 days old. Scale bar is 5 µm. Ctrl is

Postn MCM Smad2 fl/fl Postn MCM Smad3 fl/fl Postn MCM Smad2/3 fl/fl. Postn MCM. Tgfbr1/2 fl/fl TAC

Supplementary. limb. bars

a b c periosteum parietal bone bone marrow dura periosteum suture mesenchyme osteogenic front suture mesenchyme 1

SUPPLEMENTARY INFORMATION

Supplementary Figure 1. Expression of phospho-sik3 in normal and osteoarthritic articular cartilage in the knee. (a) Semiserial histological sections

SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods

Supplementary Figure 1. AdipoR1 silencing and overexpression controls. (a) Representative blots (upper and lower panels) showing the AdipoR1 protein

Supplementary Information and Figure legends

Supplementary Figure 1. SA-β-Gal positive senescent cells in various cancer tissues. Representative frozen sections of breast, thyroid, colon and

SUPPLEMENTARY DATA. Supplementary Table 1. Characteristics of Subjects.

Real-time imaging reveals the single steps of brain metastasis fo mation r

Supplementary Figure 1. Electroporation of a stable form of β-catenin causes masses protruding into the IV ventricle. HH12 chicken embryos were

T H E J O U R N A L O F C E L L B I O L O G Y

Supplementary Figure 1. Deletion of Smad3 prevents B16F10 melanoma invasion and metastasis in a mouse s.c. tumor model.

Bandana Chakravarti University of Iowa. Jianqi Yang University of Iowa. Katelin E Ahlers-Dannen University of Iowa

Supplemental Information. Otic Mesenchyme Cells Regulate. Spiral Ganglion Axon Fasciculation. through a Pou3f4/EphA4 Signaling Pathway

SUPPLEMENTARY INFORMATION

Title: Smooth muscle cell-specific Tgfbr1 deficiency promotes aortic aneurysm formation by stimulating multiple signaling events

SUPPLEMENTARY INFORMATION

Rescue of mutant rhodopsin traffic by metformin-induced AMPK activation accelerates photoreceptor degeneration Athanasiou et al

Supplementary Information. Induction of human pancreatic beta cell replication by inhibitors of dual specificity tyrosine regulated kinase

Supplementary Table 1. The primers used for quantitative RT-PCR. Gene name Forward (5 > 3 ) Reverse (5 > 3 )

Supplementary Figure 1: Expression of Gli1-lacZ in E17.5 ovary and mesonephros. a,

Supplementary Figure 1. Baf60c and baf180 are induced during cardiac regeneration in zebrafish. RNA in situ hybridization was performed on paraffin

Supplementary Figure 1. Expression of CUGBP1 in non-parenchymal liver cells treated with TGF-β

Downregulation of the small GTPase SAR1A: a key event underlying alcohol-induced Golgi fragmentation in hepatocytes

Dysregulation of Blimp1 transcriptional repressor unleashes p130cas/erbb2 breast cancer invasion (SREP T) Supplementary File

Supplemental Table S1. Primers used in qrt-pcr analyses. Supplemental Figure S1, related to Figure 4. Extracellular matrix proteins

SUPPLEMENTARY INFORMATION

Supplementary Figure 1 P53 is degraded following Chlamydia infection independent of the cell lysis and protein sample preparation procedure applied.

Supplementary Figure 1 Expression of Crb3 in mouse sciatic nerve: biochemical analysis (a) Schematic of Crb3 isoforms, ERLI and CLPI, indicating the

Supplementary Information Supplementary Fig. 1. Elevated Usp9x in melanoma and NRAS mutant melanoma cells are dependent on NRAS for 3D growth.

(A) SW480, DLD1, RKO and HCT116 cells were treated with DMSO or XAV939 (5 µm)

Supplementary Information

SUPPLEMENTARY INFORMATION

When you see this diagram, remember that you are looking at the embryo from above, through the amniotic cavity, where the epiblast appears as an oval

SHREE ET AL, SUPPLEMENTAL MATERIALS. (A) Workflow for tumor cell line derivation and orthotopic implantation.

Expanded View Figures

hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This

HEK293FT cells were transiently transfected with reporters, N3-ICD construct and

Supplementary Figure 1. Validation of astrocytes. Primary astrocytes were

Supplementary Figure 1 IMQ-Induced Mouse Model of Psoriasis. IMQ cream was

Supplementary Figure S1. Generation of LSL-EZH2 conditional transgenic mice.

Table S1. Primer sequences used for qrt-pcr. CACCATTGGCAATGAGCGGTTC AGGTCTTTGCGGATGTCCACGT ACTB AAGTCCATGTGCTGGCAGCACT ATCACCACTCCGAAGTCCGTCT LCOR

Supplementary Figures

Supplementary Materials for

Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the

Transcription:

Supplementary Figure 1. EC-specific Deletion of Snail1 Does Not Affect EC Apoptosis. (a,b) Cryo-sections of WT (a) and Snail1 LOF (b) embryos at E10.5 were double-stained for TUNEL (red) and PECAM-1 (green). Nuclei were stained with DAPI (blue). Scale bars: 50 μm. (c) Quantification of apoptotic ECs (TUNEL + /PECAM + cells) in the embryos (n = 3 each). Data are presented as mean ± SEM. Not significant, Student s t test.

Supplementary Figure 2. Snail1 Is Expressed in Arterial and Venous Beds During Embryonic Development (a,b) Whole-mount X-gal/lacZ staining of embryo at E9.5 (a) and E12.5 (b), respectively. Arrows (red) highlights X-gal/lacZ-positive cranial vessels and the DA at E9.5, as well as cranial vessels and ISVs at E12.5. Scale bars: 1 mm. (c-j) E10.5 Snail1LacZ/wt embryos were sectioned and stained with X-gal/lacZ followed by PECAM-1 immunohistochemical staining. X-gal/lacZ-positive ECs and perivascular cells (denoted by green arrows and red arrows, respectively) are localized within the CV and DA [(c,d); the boxed area in panel c is enlarged in panel d] as well as the vitelline artery (VA) [(e,f); the boxed area in panel e is enlarged in panel f]. Additional staining is observed large arteries and veins [(g,h); the boxed area in panel g is enlarged in panel h] as well as small vessels [(i,j); the boxed area in panel i is enlarged in panel j]. DA, dorsal aorta; CV, cardinal vein; VA, vitelline artery; A, artery; V, vein. Scale bars: 50 μm.

Supplementary Figure 3. EC-specific Deletion of Snail1 Alters Vascular Remodeling in Placental Tissues and Allantois Explant Cultures (a-d) H&E staining of placental sections from WT (a,c) and Snail1 LOF (b,d) embryos at E10.5 (left panel) and E11.5 (right panel). Although the maternal decidua (MD), the chorionic plate (CP), and the trophoblast giant cells (TGC) are comparable, the labyrinthine layer (LBR) is reduced in Snail1 LOF placentas. Insets display higher magnifications of representative fields. Green arrows and yellow arrows denote maternal blood vessels and fetal vessels, respectively. Scale bars: (a-d) 400 μm; (a-d insets) 50 μm. (e) Quantification of length of LBR layer and invaded fetal blood vessels from E10.5 WT and Snail1 LOF placentas (n = 4). Data are presented as mean ± SEM. **p 0.01, Student t test. (f) Quantification of length of LBR layer and invaded fetal blood vessels from E11.5 WT and Snail1 LOF placentas (n = 4). Data are presented as mean ± SEM. **p 0.01, Student t test. (g,h) Allantoises dissected from Snail1LacZ/wt embryos were subjected to whole-mount X-gal/lacZ staining (g) followed by PECAM-1 immunofluorescent staining (h). Scale bars: 100 μm. (i) The allantois explant cultures were double-stained for PECAM-1 and TUNEL, and the apoptotic ECs (TUNEL+/PECAM+ cells) were counted (n = 3 each). Data are presented as mean ± SEM. Not significant, Student s t test.

Supplementary Figure 4. Deletion of Snail1 Does Not Affect EC Apoptosis. (a-d) Cryo-sections of implants originated from Adeno-βGal (a,b) or Adeno-Cre (c,d) treated ECs were stained for TUNEL (red). Nuclei were stained with DAPI (blue). Scale bars: 50µm.

Supplementary Figure 5. DAPT-Dependent Inhibition of Embryonic N1ICD Expression (a-d) Cross-sections obtained from untreated or DAPT-treated embryos were co-stained with antibodies against PECAM-1 and N1ICD. Cell nuclei were stained with DAPI (blue). Scale bars: 50 μm. Results are representative of 2 experiments performed. (e) Whole cell lysates obtained from untreated or DAPT-treated embryos were subjected to Western blot analysis. Results are representative of 2 experiments performed.

Supplementary Figure 6. DAPT-Dependent Rescue of Vascular Remodeling Defects in Snail1 LOF Embryos, Yolk Sacs, Allantois Explants and ECs (a-b) Confocal analysis of PECAM-1-stained whole-mounts of untreated (a) or DAPT-treated (b) embryos. Rectangled areas highlight improved vascular remodeling in DAPT-treated Snail1 LOF mutant embryos. Scale bar: 100 μm. (c-h) Timed-pregnant mice were treated with vehicle or DAPT, and the yolk sacs dissected from the vehicle- or DAPT-treated embryos were subjected to whole-mount PECAM-1 immunofluorescent staining. Scale bars: 100 μm. (i-p) Adeno-βGal and Adeno-Cre infected ECs were seeded atop Matrigel-coated dishes and cultured for 12 h in the presence of vehicle or DAPT (8 μm). Scale bars: 50 μm. (q) Adeno-βGal and Adeno-Cre infected ECs were treated with vehicle or DAPT (8 μm) for 12 h and subjected to Western blot analysis. (r) Quantification of relative vascular sprouting in cultured ECs (n=3). Data are presented as mean ± SEM. ## p < 0.01; **p < 0.01, ANOVA.

Supplementary Figure 7. Snail1-Dependent Transcriptional Repression of Dll4 Promoter Activity (a) ECs derived from E10.5 Snail1fl/fl embryos were electroporated with 0.5 μg of pgl3 control vector or a mouse Dll4 promoter reporter construct and luciferase activity determined. (mean ± SEM; n=3). **p < 0.01, Student s t test. (b) 293T cells were co-transfected with increasing amounts of a mock or human Snail1 expression vector (1.0 ng-250.0 ng) in combination with a full-length mouse Dll4 promoter reporter construct (25 ng) and analyzed by luciferase assay. Ectopic expression of Snail1 represses Dll4 promoter activity in a dose-dependent manner. Data are presented as mean ± SEM. *p < 0.05, **p < 0.01, Student s t test. (c) Cultured WT ECs were treated with GSK3 inhibitor, CHIR99021 (3 μm) in the presence or absence of VEGF (100 ng/ml) for 12 h. Cell lysates were prepared and subjected to Western blot analysis. (d) Cultured WT ECs were pretreated with U0126 (20 μm), LY294002 (10 μm) or sanguinarine (2.5 μm) for 1 h followed by stimulation with bfgf (20 ng/ml) for 12 h. Cell lysates were prepared and subjected to Western blot analysis.

Supplementary Figure 8. Snail1-Dependent Transcriptional Repression of Notch1 Promoter Activity (a) Diagram depicts the two E-boxes located within the proximal region of the mouse Notch1 promoter. (b) ECs derived from E10.5 Snail1fl/fl embryos were electroporated with a mock or Snail1 expression vector (0.5 μg or 2.0 μg) in combination with 0.5 μg of a mouse Notch1 promoter reporter construct and luciferase activity determined. (mean ± SEM; n=3). *p < 0.05, **p < 0.01, Student s t test.

Supplementary Figure 9. Cardiac Cushion Development in Snail1 LOF Mutant Embryos (a,b) Sagittal sections from paraffin-embedded E10.5 WT (a) and Snail1 LOF (b) embryos were evaluated by H&E staining. Representative images show mesenchymal cell invasion into the atrioventricular canal (AVC) (boxed in red). Scale bar: 50 μm. (c) Quantification of relative mesenchymal cell invasion into AVC regions (boxed in red) (n=3 each). Data are presented as mean ± SEM. **p < 0.01, Student s t-test.

Supplementary Figure 10. Snail1 and Postnatal Retinal Angiogenesis. (a,b) Schematic of Tamoxifen administration strategy in embryos (a) and pups (b). (c) Pulmonary ECs isolated from tamoxifen-treated pups were subjected to RT-qPCR analysis. Data are presented as mean ± SEM (n=3). **p < 0.01, ANOVA test. (d-f) Whole-mount PECAM-1 immunofluorescent staining of P6 WT (d and d ), Het (e and e ) and ilof (f and f ) retina. Scale bar: 100 μm. (g) Quantification of radial growth of WT (double-arrow shown in d), Het (double-arrow shown in e) and ilof (double-arrow shown in f) retinal vasculature is shown 68. Data are presented as mean ± SEM (n = 4). Not significant, ANOVA. (h and i) Quantification of tip cell number (h) and filopodia number (i) per microscopic field at the angiogenic fronts in WT (d and d with d displaying an enlarged image of the boxed area outlined in d), Het (e and e, e represents the indicated area in e) and ilof (f and f, f represents the indicated area in f) retinas (n = 4). Data are presented as mean ± SEM. Not significant, ANOVA.

Supplementary Figure 11. Full-Length Images of Western Blots (a) Whole membrane blots show the specific single bands using Snail1, β-actin, Dll4, N1ICD, pgsk3β, Snail2, p-akt, AKT, p-erk1/2 and ERK1/2 antibodies for the indicated figures. Blot images of the selected portions shown in each panel were used for the indicated figures in the text.

Supplementary Figure 11 continued. Full-Length Images of Western Blots (a) Whole membrane blots show the specific single bands using Snail1, β-actin, Dll4, N1ICD, pgsk3β, Snail2, p-akt, AKT, p-erk1/2 and ERK1/2 antibodies for the indicated figures. Blot images of the selected portions shown in each panel were used for the indicated figures in the text.

Supplementary Table 1_Wu qpcr primer sequences Gene Mouse Snail1-Forward Mouse Snail1-Reverse Mouse Dll4-Forward Mouse Dll41-Reverse Mouse Jag1-Forward Mouse Jag1-Reverse Mouse Notch1-Forward Mouse Notch1-Reverse Mouse Hey1-Forward Mouse Hey1-Reverse Mouse Hey2 -Forward Mouse Hey2-Reverse Mouse Hes1-Forward Mouse Hes1-Reverse Mouse Ephrin B2-Forward Mouse Eprin B2-Reverse Mouse Eph B4-Forward Mouse Eph B4-Reverse Sequence AAGATGCACATCCGAAGC ATCTCTTCACATCCGAGTGG GACTGAGCTACTCTTACCGGGTCA CTTACAGCTGCCACCATTTCGACA CGTGGCAACGACCGTAATCGC ACTGGAATCCCAGGCCTCCAC TGCCTGAATGGAGGTAGGTGCGAA GCACAGCGATAGGAGCCGATCTCA GGCTGGTACCCAGTGCCTTTG CCTTTCCCTCCTGCAGTGTGC CCAGGCTACAGGGGGTAAAGG CGGGTCAAGGCCTTCCACTGA GGAGAAGAGGCGAAGGGCAAG GGTTCCGGAGGTGCTTCACAG TGGGTCTTTGGAGGGCCTGGAT GGACCGTGATTCCTGGCTGATC CAGGGTACGAGGCTGGGGAA GCATGGCAGGCAGGACTCGT β