Amylin Pharmaceuticals Inc. Research and Development Breakfast

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1 Challenging Science. Changing Lives. Amylin Pharmaceuticals Inc. Research and Development Breakfast October 24,

2 Safe Harbor Statement > This presentation contains forward-looking statements about Amylin. Our actual results could differ materially from those discussed due to a number of factors, including risks that BYETTA and/or SYMLIN may be affected by unexpected new data, technical issues, or manufacturing and supply issues; our clinical trials may not start when planned and/or confirm previous results; our preclinical studies may not be predictive; our product candidates and/or label expansion requests may not receive regulatory approval; we may not be able to complete our manufacturing facility on a timely basis; and inherent scientific, regulatory and other risks in the drug development and commercialization process. These and additional risks and uncertainties are described more fully in the Company's SEC filings. Amylin disclaims any obligation to update these forward-looking statements. 2

3 Agenda > Introduction > Ginger Graham, CEO > Clinical Development > Orville Kolterman, MD Senior Vice President, Clinical and Regulatory Affairs > SYMLIN > BYETTA > Exenatide LAR > Early Development > Alain Baron, MD Senior Vice President, Research > Fast-to-man Approach > Approach to Obesity > Approach to Diabetes > Discovery Research > Michael Hanley, PhD Vice President, Discovery Research > Philosophy and Platform > Closing remarks > Daniel Bradbury, President and COO 3

4 Clinical Development Orville Kolterman, MD Senior Vice President, Clinical and Regulatory Affairs 4

5 Supporting Two First-In-Class Medicines > SYMLIN (pramlintide acetate) > Post-approval commitments > Label expansion > SYMLIN Pen > BYETTA (exenatide) > Post-approval commitments > Label expansion > Exenatide LAR 5

6 SYMLIN Market Support > Post-approval Commitments > Observational Study > Objective: Evaluate safety of SYMLIN use in the marketplace > Focus on severe hypoglycemia observed during first 3 months > 1250 subjects followed for 6 months > Over 70% recruited to date > Data confirms safe initiation of therapy > Pediatric pharmacokinetic study enrollment nearing completion > Label expansion for use with basal insulin alone in type 2 patients > Study completed > snda submission in Q406 6

7 SYMLIN + Basal Insulin Study STUDY DESIGN Primary Objective % of patients meeting composite endpoint 16 Weeks Type 2 DM (n=212) Basal insulin ± Oral Agents A1C % (Basal insulin ± Oral Antidiabetic) + Placebo (Basal insulin ± Oral Antidiabetics) + SYMLIN Screening Baseline Week 2 Week 4 Week 8 Week 12 Week 16 Weekly telephone contact with site 7-point glucose profiles prior to each site visit 7

8 SYMLIN + Basal Insulin Study ENDPOINTS > Co-Primary Endpoints: > Composite endpoint at Week 16 A1C 7.0% and/or A1C reduction 0.5% Postprandial glucose excursions 40 mg/dl No weight gain No severe hypoglycemia > Change in A1C from Baseline to Week 16 > Secondary Endpoints: > A1C and A1C targets > Fasting and postprandial glucose > Body weight and waist circumference > Markers of CV risk > Patient-reported outcomes 8

9 SYMLIN + Basal Insulin Safely Improved Glycemic Control With Weight Loss Mean (SE) Δ A1C From Baseline (%) Mean (SE) Δ Body Weight From Baseline (kg) * * ** * * Time (Weeks) ITT LOCF N = 211, * p<0.0001, **p<0.05 Placebo (n = 106) SYMLIN (n = 105) -2.3 ± 0.4 kg * Mean (SE) Blood Glucose (mg/dl) > Incidence of hypoglycemia * * Brk Lun Din Bed > SYMLIN + Basal insulin: 44% > Placebo + Basal insulin: 47% * Baseline Week16 > Severe hypoglycemia: 1 event in SYMLIN group 9

10 One Out of Four SYMLIN-Treated Patients Achieved Composite Endpoint 40 A1C 7.0% and/or A1C reduction 0.5% Postprandial glucose excursions 40 mg/dl No weight gain No severe hypoglycemia % Subjects Achieving Composite Endpoint At Week % 10 7% 0 Placebo n = 106 SYMLIN n =

11 SYMLIN Pen Delivers Multiple, Fixed Doses > SymlinPen snda submitted; 2007 launch planned Pen prototype > Development work underway on more concentrated formulation > Increased patient convenience + reduced COGS > Supports both SYMLIN and pramlintide obesity program 11

12 BYETTA Market Support > Pediatric pharmacokinetics study underway > Pediatric exclusivity agreement reached with FDA > Monotherapy indication study has initiated enrollment > Target ~250 subjects not achieving glucose goals on diet and exercise > 5 and 10 mcg arms ( AMIGO-like design) > Data available by end 2007 and submission planned in 2008 > 6-month review anticipated > snda for use in patients treated with TZDs > Supported by 16-week efficacy data > Submitted Q1 2006; 10-month review anticipated > snda supporting in use pen storage at room temperature > Anticipate new usage guidelines in place in early

13 Exenatide LAR 13

14 Once-Weekly Exenatide LAR A1C AND WEIGHT IMPROVEMENTS A1C Change (%) Weight Change (kg) Mean Baseline A1C Placebo LAR 0.8 mg Exenatide LAR 2.0 mg Exenatide LAR Mean Baseline Weight Placebo LAR 0.8 mg Exenatide LAR 2.0 mg Exenatide LAR 8.6% 8.6% 8.3% kg kg kg Time (wk) +0.4±0.3% -1.4±0.3% -1.7±0.3% ± 0.7 kg ± 0.7 kg -3.8 ± 1.4 kg Pre Blood Glucose (mg/dl) Week 15 Post Pre Post Pre > Generally well-tolerated Post Breakfast Lunch Dinner 3 AM > Mild nausea > No adverse events leading to early withdrawal in LAR treatment arms 14

15 Once-Weekly Exenatide LAR CLINICAL DEVELOPMENT ONGOING > Subcutaneous injection > Needle size / volume to be finalized during process development > Long-term study of exenatide LAR safety and efficacy ongoing > Open-label, randomized study of ~300 subjects > Includes BYETTA twice-daily comparator group > Efficacy endpoint reduction in A1C > Anticipated data available in 2H07 > Process development and scale-up activities on track > Construction of OH facility proceeding well > Study enrollment plan linked to manufacturing scale-up > Expect to finalize commercial manufacturing process by 2H08 15

16 Amylin s Presence Across Diabetes Spectrum NEW OPTIONS FOR EXPANDED PATIENT GROUPS ~21 million people ~2 million ~8 million ~4.5 million Diet/Exercise Only One Oral Agent Multiple Oral Agents Insulin and Orals Intensive Insulin Current market ~6 million on MET +/- SFU Current market ~1.3 million Potential expanded indication ~1.2 million Potential expanded indication as foundational diabetes therapy Potential expanded indication >1.5 million using TZDs US Market Data from CDC, ADA, and Amylin estimates 16

17 Early Development Alain Baron, MD Senior Vice President, Research 17

18 Outline > Fast to Man Approach to Clinical Research and Development > Congestive Heart Failure as an Example > Approach to Obesity > INTO: Integrated Neurohormonal Therapy for Obesity > Review of 3 Molecular Franchises: Pramlintide, PYY3-36, Leptin > Approach to Diabetes 18

19 GLP-1 in Congestive Heart Failure: Example of Amylin s Fast-to-Man Clinical Research Approach 19

20 Fast to Man Proof-of-Concept at Amylin GLP-1 FOR CONGESTIVE HEART FAILURE Small Molecule Library Traditional Development Discovery Lead Hit Lead PoC Optimization Research Early Development P3 Clinical Full Development PHORMOL GLP-1 (native) Animal PoC hpoc hglp-1 via pump Data in Q4 If PoC Positive CHF Candidate Optimization e.g., GLP-1 Analog-Once a Day/Week P3 20

21 Integrated Neurohormonal Therapy for Obesity INTO 21

22 The Market Demands Better Efficacy and Safety: CAN COMBINATION THERAPY DELIVER? 100- Surgery Combo Tx Mono 80- % of Patients 50- Bariatric surgery Weight loss (%) 22

23 Integrated Neurohormonal Therapy for Obesity: LEVERAGING PHYSIOLOGY Vagal afferents Adipose tissue Hypothalamus Hindbrain GI tract Ghrelin Leptin CCK Insulin PYY 3-36 Visfatin Adiponectin Resistin PP Amylin GLP-1 OXM Pancreatic Amylinislets GIP Clinical-Stage Compounds AC (r-met human leptin) AC137 (Pramlintide) AC (synthetic PYY3-36) Adapted from Badman MK, Flier JS Science, 5717, ,

24 Molecular Franchises INTO Strategy: FRAMEWORK OF OPPORTUNITIES Research Capabilities Potential Treatments Amylin Amylin Products Product Regimens PYY PYY Leptin Leptin Analogs Analogs Combos Combos Phybrids Phybrids Drug Drug Delivery Delivery 4 main goals: highly efficacious safe conveniently delivered favorable COGS Mono Therapy Dual-Combo Therapy Triple-Combo Therapy 24

25 Molecular Franchises INTO Strategy: FRAMEWORK OF OPPORTUNITIES Research Capabilities Potential Treatments Amylin Amylin Products Product Regimens PYY PYY Leptin Leptin Analogs Analogs Combos Combos Phybrids Phybrids Drug Drug Delivery Delivery 4 main goals: highly efficacious safe conveniently delivered favorable COGS Mono Therapy Dual-Combo Therapy Triple-Combo Therapy 25

26 Pramlintide Obesity Program Phase 2b + Extension trial update 26

27 Mean (SE) Change in Body Weight (%) Pramlintide Phase 2b and Extension Study % CHANGE IN WEIGHT 360 mcg BID Regimen 120 mcg TID Regimen Wt Loss Wt Maintenance 0 Wt Loss Wt Maintenance mcg (BID n=22) Time (Months) Placebo (n=17) mcg (TID n=25) Data shown for subjects who completed 1 year of treatment. 27

28 Pramlintide Obesity Program: STRATEGIC CONSIDERATIONS FOR PHASE 3 > Efficacy > Sustained 52-week weight loss in conjunction with lifestyle intervention > Safety > Approved for diabetes indication > Extensive nonclinical toxicology program completed > No evidence of neuro-psychiatric or idiosyncratic adverse events > No severe hypoglycemia observed in obesity trials > Product Development > More concentrated formulation provides increased convenience and reduced COGS > Potential to become first neurohormonal therapy for obesity 28

29 Pramlintide Obesity Program NEXT STEPS > Pramlintide is foundational of current INTO approach > Beginning preparations for Phase 3 > Phase 3 start date and design guided by: > Ongoing combination study results > Clinical design strategy and regulatory discussions 29

30 Why Did Amylin Acquire Leptin? > Leptin Not Impressive in Clinical Trial Science, October 1999 > What happened to leptin? WebMD, August 1999 > Search for an obesity cure fails BBC, September

31 Amylin + Leptin: Preclinical Proof of Concept SYNERGISTIC, FAT-SPECIFIC WEIGHT LOSS Vehicle Leptin (500 µg/kg/day) Amylin (100 µg/kg/day) Amylin+Leptin 2 0 Grams Change in Fat Δ % Body Weight (Vehicle Corrected) Week ~2% ~6% ~12% Grams Change in Protein 0 Diet-induced obese (DIO) rats Continuous infusion of peptides (osmotic minipump) 31

32 Pramlintide + Leptin CLINICAL PROOF OF CONCEPT STUDY INITIATED > Randomized, controlled double-blind combination study > 180 subjects target enrollment, 125 to be randomized > 24-week study > 4-week lead-in period with diet + pramlintide > 3 treatment groups, BID dosing > Leptin + Placebo > Pramlintide + Placebo > Leptin + Pramlintide > Evaluate effect on body weight 32

33 Amylin + Leptin: Preclinical Results Support Clinical Study Design Amylin Lead-in A, L or A+L Treatment % change in body weight (vehicle corrected) Diet-induced obese (DIO) rats Week Vehicle Leptin 250 µg/kg/d Amylin 100 µg/kg/d Amylin + Leptin 250 µg/kg/d 33

34 Molecular Franchises INTO Strategy: FRAMEWORK OF OPPORTUNITIES Research Capabilities Potential Treatments Amylin Amylin Products Product Regimens PYY PYY Leptin Leptin Analogs Analogs Combos Combos x3 x3 Phybrids Phybrids Drug Drug Delivery Delivery 4 main goals: highly efficacious safe conveniently delivered favorable COGS Mono Therapy Dual-Combo Therapy Triple-Combo Therapy 34

35 Integrated Neurohormonal Therapy for Obesity: TRIPLE COMBINATION THERAPY % Change in Body Weight (Vehicle-Corrected) Roux-en-Y Body Weight Time (Days) Diet-induced obese (DIO) rats *p<0.05 vs. vehicle; **p<0.05 vs. all groups Continuous infusion of peptides (osmotic minipump) Sources: Roux-en-Y - Stylopoulos et al, Surg Endosc 19:942-6, 2005 * ** % Body Fat Vehicle Leptin 500 mcg/kg/d Amylin 300 mcg/kg/d PYY(3-36) 1000 mcg/kg/d A+P+L (1/2) Adiposity ** 35

36 Molecular Franchises INTO Strategy: FRAMEWORK OF OPPORTUNITIES Research Capabilities Potential Treatments Amylin Amylin Products Product Regimens PYY PYY Leptin Leptin Analogs Analogs Combos Combos Phybrids Phybrids Drug Drug Delivery Delivery 4 main goals: highly efficacious safe conveniently delivered favorable COGS Mono Therapy Dual-Combo Therapy Triple-Combo Therapy 36

37 Integrated Neurohormonal Therapy for Obesity OPTIMIZED SECOND GENERATION COMPOUNDS Amylin 2 nd Gen Amylinomimetic PYY 3-36 Y Family Mimetic 0 0 % Weight Loss (Vehicle Corrected) Roux-en-Y % Weight Loss (Vehicle Corrected) Roux-en-Y Week Week Vehicle Vehicle Amylin (69 nmol/kg/day) PYY 3-36 (67 nmol/kg/day) Amylinomimetic (69 nmol/kg/day) Y Family Mimetic (67 nmol/kg/day) Diet-induced obese (DIO) rats Continuous infusion of peptides (osmotic minipump) Sources: Roux-en-Y - Kaplan L et al, Surg Endosc 19:942-6,

38 Integrated Neurohormonal Therapy for Obesity DUAL COMBINATION THERAPY (2 ND GENERATION) 0 Amylin + PYY nd Gen Amylinomimetic + Y Family Mimetic Δ % Body Weight (Vehicle Corrected) Roux-en-Y 5% 6% 10% Δ % Body Weight (Vehicle Corrected) Roux-en-Y 11% 13% 18% Week Week Vehicle PYY 3-36 (500 µg/kg/day) Amylin (100 µg/kg/day) Amylin+PYY 3-36 Vehicle Y Family Mimetic (500 µg/kg/day) Amylinomimetic (10 µg/kg/day) Amylinomimetic + Y Family Mimetic Diet-induced obese (DIO) rats Continuous infusion of peptides at full doses (osmotic minipump) Source: Roux-en-Y - Kaplan L et al, Surg Endosc 19:942-6,

39 Obesity Clinical Research Program Q4 2006: 4 new clinical obesity studies > 2 nd generation amylinomimetic > IND submitted, Phase 1 single-dose study initiated (safety, tolerability, PK) > Pramlintide + Leptin > Proof of concept study initiated (weight loss) > Pramlintide + PYY3-36 > Safety/tolerability combination multi-dose study initiated > Pramlintide + oral agents > Combination study to be initiated (weight loss) 2007 > Pramlintide + PYY Leptin PoC combo study start planned 39

40 Integrated Neurohormonal Therapy for Diabetes 40

41 Molecular Franchises Diabetes Strategy: FRAMEWORK OF OPPORTUNITIES Research Capabilities Potential Treatments GIP GIP Leptin Leptin GLP-1 GLP-1 Amylin Amylin Novel Novel PHORMOL PHORMOL Candidate Candidate Analogs Analogs Combos Combos Phybrids Phybrids Drug Drug Delivery Delivery Products Product Regimens 4 main goals: highly efficacious safe conveniently delivered favorable COGS Mono Therapy Dual-Combo Therapy Triple-Combo Therapy 41

42 Integrated Neurohormonal Therapy for Diabetes: Role of Glucose-Dependent Insulinotropic Polypeptide GIP 42

43 Glucose-dependent Insulinotropic Polypeptide > GIP is the second incretin > 42 amino acids > Released by nutrients from K cells in the gut > DPP IV sensitive > Augments glucose-dependent insulin secretion as well as GLP-1 in healthy humans > Poor efficacy in type 2 diabetes GIP Resistance? > Second generation GIP mimetic > Peptidic analog of mammalian GIP with an extended half-life 43

44 2 nd Generation GIP Mimetic Produces Sustained Glucose Lowering > Favorable activity for acute glucose lowering in 2 mouse models 140 NIH/Swiss mice db/db mice 500 Glucose, mg/dl * Vehicle GIP, native 2AC nd gen GIP mimetic * * Glucose, mg/dl Vehicle * * * * GIP, native 2 nd gen GIP mimetic * minutes Time (minutes) Time (minutes) 44

45 2nd Generation GIP Mimetic Enhances Glucose Lowering Effect > Fasting blood glucose after 4 weeks continuous infusion of exendin analog Glucose, mg/dl 300 HF High Vehicle Fat Vehicle 275 LF Low Vehicle Fat Vehicle exendin Exendinsurrogate benchmark * * Glucose, mg/dl * exendin surrogate + GIP exendin surrogate + AC minutes injection Exendin benchmark + GIP Exendin benchmark + 2 nd gen GIP mimetic * Time (minutes) * 45

46 2 nd Generation GIP Mimetic Enhances Glucose Lowering Effect 200 GLP-1 exendin receptor surrogate agonist + GIP + GIP exendin GLP-1 receptor surrogate agonist + AC nd gen GIP mimetic Normal (low fat) Glucose, mg/dl * * * minutes injection Time (minutes) 46

47 Unmet Market Need For Diabetes Therapy ROLE OF INTEGRATED NEUROHORMAL APPROACH 100- FUTURE NEAR TERM CURRENT 80- % of Patients 50- Normal Glucose Current Glucose Goals Unacceptable Glucose Control A1C (%) 47

48 Early Development Conclusions > Fast-to-Man > Integrated Neurohormonal Therapies: > Addresses complex diseases more effective than mono-therapies > Enhanced through targeted analoging 48

49 Discovery Research Michael Hanley, PhD Vice President, Discovery Research 49

50 Outline > Philosophy > Platform > Enabling Technology 50

51 Philosophy of Drug Discovery and Development at Amylin > Peptide and protein hormones can make ideal drugs because they integrate physiological systems > Most diseases are potentially treatable with peptide therapeutics > Peptide hormone therapeutics are generally potent and largely devoid of idiosyncratic toxicities > Adverse events are most often predicted and manageable > If highly effective and safe, injectables can compete in oral agent space > Evolution promotes peptide hormone optimization according to speciesspecific needs a shortcut to discovery 51

52 Amylin Screening Path DIRECT SCREENING IN ANIMAL MODELS Target Driven Amylin Approach PHORMOL: Bioactive Peptides Molecular Target Whole Cell Animal Model Animal Model: obesity + Animal Model: diabetes Animal Model: cardiovascular 52

53 Building Value PHORMOL: A KEY DISCOVERY ASSET Literature And Patents Bioinformatics Proprietary Computational Tools: PHACTS, PHICTION, PHINDER PHASST-MS Bioinformatic validation and MS-based discovery of novel hormones PHORMOL (Polypeptide Hormone Library) Currently >1000 Peptides Smart Samples New peptide discovery from innovative experimental preparations or sources 53

54 Research Informatics PHINDER > Identifies hormonicity : basis of predictive hormone code > Analyzes and optimizes sequences > Mines entire genomes in automated computational engine PHORMOL STRUCTURE-ACTIVITY DATA SOURCES In Vitro - CYTOCENSUS In Vivo Molecular Published PHINDER PREDICTIVE MODELS Hormonicity Aggregation In Vitro Profiling Integrative Physiology Antigenicity Chemical Stability Patent Novelty More Parameters.. PHOEBBUS 54

55 Research Informatics for Peptide Therapeutics PHACTS Mine the Genome & PHICTION Screen TSAR & Classify PHORMOL User PHOEBBUS Interface Peptide PHINDER Property Prediction 55

56 Lead Optimization Built Around Target Candidate Profile > Can the potency or efficacy be improved? > Are there any pharmaceutical properties to improve? > Solubility, stability, aggregation potential > Metabolic stability > Clearance, half-life > Immunogenicity > What is the desired pharmacokinetic profile? > Sustained > Pulsatile > What is the desired route of delivery? 56

57 Profile of 2 nd Generation Compounds Endpoint Y Family Mimetic Amylinomimetic (2 nd Gen) Efficacy Acute & Chronic Combo-Therapy Potency Acute = Chronic Duration of Action Plasma Lipids (decrease) = Body Composition = = Stability Plasma Chemical Physical Off Target Profiling Telemetry = = Locomotor = = Intellectual Property Applications filed Applications filed 57

58 Towards Peptide Therapeutic Design CREATE FUNCTIONAL PEPTIDE HYBRIDS ( PHYBRIDS ) PHYBRIDS Hormone + Hormone Hormone + Protease Inhibitor or Plasma Protein Binder Hormone + Targeting Motif Hormone + Stabilizing Motif Synergism/ multiple indications Stability/ Long-acting Bioavailability/ Organ Targeting Novelty/ Stability 58

59 Phybrid Approach: Potential to Enable Obesity Combo-Tx in a Single NME Example Example 2 -Gen Amylinomimetic 2 -Gen Y Family Mimetic 2 -Gen Amylinomimetic Leptin dual receptor action in vivo activity 59

60 Drug Delivery Technologies Under Evaluation Non-Invasive Systems* Once Daily Systems* Drug delivery may improve > Safety and efficacy > Physicians willingness to prescribe > Patients willingness to fill > Patient s compliance > Patient s long-term adherence/persistence Once Weekly/Monthly* Pharmaceutical properties of candidate are tailored to target product profile and Implantable Systems* drug delivery modality * Photos are illustrative examples only 60

61 Discovery Research Conclusions > Broad, proprietary discovery platform supported by unique bioinformatics and technology > Drug candidates are derived from a combination of discovery, design and opportunistic licensing > Peptide therapeutics comprise a sustainable resource for long-term drug discovery and development in multiple chronic diseases 61

62 Closing Remarks Dan Bradbury President and Chief Operating Officer 62

63 Molecular Franchises Amylin Amylin Research Strategy: NOVEL THERAPIES FOR THE FUTURE Therapeutic Franchises R&D Capabilities PYY PYY Diabetes Analogs Analogs Phybrids Phybrids Leptin Leptin GIP GIP Obesity Cardiovascular Disease Combos Combos Drug Drug Delivery Delivery GLP-1 GLP-1? PHORMOL PHORMOL Candidate Candidate 63

64 Challenging Science. Changing Lives. > Building sustainable growth for the future > Amylin has a large, broad discovery platform > Supported by unique bioinformatics > Selected early-stage technology acquisition > Amylin s R&D approach is risk-advantaged > Well-qualified drug candidates with favorable safety profiles > Amylin has a robust pipeline > Promising candidates in several therapeutic areas 64

65 Panel Participants > Soumitra Ghosh, PhD > Executive Director, Research > David Maggs, MD > Vice President, Medical Affairs > Lisa Porter, MD > Vice President, Clinical Development > Chris Rhodes, PhD > Executive Director, Pharmaceutical Sciences > Christian Weyer, MD, MAS > Executive Director, Clinical Research 65

66 Panel Q&A 66

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