A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion

Size: px
Start display at page:

Download "A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion"

Transcription

1 TSINGHUA SCIENCE AND TECHNOLOGY ISSNll ll09/10llpp Volume 19, Number 6, December 2014 A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion Junping Meng, Shoubin Dong, Liqun Tang, and Yi Jiang Abstract: Angiogenesis, the growth of new blood vessel from existing ones, is a pivotal stage in cancer development, and is an important target for cancer therapy. We develop a hybrid mathematical model to understand the mechanisms behind tumor-induced angiogenesis. This model describes uptake of Tumor Angiogenic Factor (TAF) at extracellular level, uses partial differential equation to describe the evolution of endothelial cell density including TAF induced proliferation, chemotaxis to TAF, and haptotaxis to extracellular matrix. In addition we also consider the phenomenon of blood perfusion in the micro-vessels. The model produces sprout formation with realistic morphological and dynamical features, including the so-called brush border effect, the dendritic branching and fusing of the capillary sprouts forming a vessel network. The model also demonstrates the effects of individual mechanisms in tumor angiogenesis: Chemotaxis to TAF is the key driving mechanisms for the extension of sprout cell; endothelial proliferation is not absolutely necessary for sprout extension; haptotaxis to ExtraCellular Matrix (ECM) gradient provides additional guidance to sprout extension, suggesting potential targets for anti-angiogenic therapies. Key words: tumor angiogenesis; ExtraCellular Matrix (ECM); capillary network; partial differential equation 1 Introduction Despite tremendous progress in the fighting against cancer in recent decades, the disease remains a huge health challenge in both the developed and developing countries. Understanding how cancer develop has a Junping Meng is with the School of Electronic & Information Engineering, South China University of Technology, Guangzhou , China. junpingmeng@163.com. Shoubin Dong is with the School of Computer Science & Engineering, South China University of Technology, Guangzhou , China. sbdong@scut.edu.cn. Liqun Tang is with the School of Civil Engineering & Transportation, South China University of Technology, Guangzhou , China. lqtang@scut.edu.cn. Yi Jiang is with the Department of Mathematics & Statistics, Georgia State University, Atlanta, GA 30303, USA. yjiang12@gsu.edu. To whom correspondence should be addressed. Manuscript received: ; accepted: profound and far reaching significance for it can not only help to decrease the incidence and mortality rate, but also guide clinical diagnosis and treatment. Tumorinduced angiogenesis, the growth of new blood vessel from existing ones due to tumor, is one key step in cancer development, marking the transition from benign to potentially malignant tumor. We propose to a new mathematical model that aims to help understand this important stage of cancer development. Since the initial proposal by Folkman in the early 1970s [1], much research has focused on understanding the mechanisms of angiogenesis and on targeting angiogenesis as a means of cancer therapy. The healthy body controls angiogenesis by balancing pro- and anti-angiogenic factors [2]. This balance is disrupted in many pathologies including cancer [1]. The growth of tumor is limited by nutrient supply and waste accumulation [3]. Hypoxic or oxygen deprived cells inside tumors respond to the environmental changes by up-regulating their production of Tumor

2 Junping Meng et al.: A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion 649 Angiogenic Factors (TAFs), the most important ones being the Vascular Endothelial Growth Factor family (VEGFs). The TAFs diffuse into surrounding tissue, establish a concentration gradient, and create a proangiogenic environment. Endothelial cells that line the nearby blood vessel, when activated by TAFs, release proteases to degrade the blood vessel wall, leave the vessel wall, and migrate into the tissue. The active endothelial cells proliferate and migrate upgradient toward the high concentration of TAFs because they are chemotactic to TAF, and form a capillary sprout. It has been proposed that only the leading endothelial cells migrate, termed tip cell, while the cells behind the sprout tip follow the path and proliferate [3]. Additionally, the migration of endothelial cells requires biomechanical interactions between cells and the extracellular matrix (ECM), collagen and fibronectin are the major proteins of ECM. Gradient of cell-ecm binding also guides endothelial cells migration toward higher cell-ecm binding, as contact guidance and haptotaxis. The endothelial cells could also secrete Matrix Metallo Proteinases (MMPs), which degrade the ECM to pave a path when the ECM is too dense. The sprout formation requires complicated multifaceted and multiscale coordination of processes from molecular, cellular, to tissue levels. The past couple of decades have seen many mathematical models of angiogenesis. Anderson and Chaplain [4] modeled cornea angiogenesis using a discrete-continuous model where the tip cells were discretization of a set of continuous equations. The model assumed that the migration of endothelial cells is influenced by three factors: random motility, chemotaxis in response to TAF released by the tumor, and haptotaxis in response to fibronectin gradients in the extracellular matrix. Similar to Ref. [4], Harrington et al. [5] modeled tumor-induced angiogenesis, using reaction-diffusion equations for dynamics of TAF and inhibitor concentrations and endothelial cells were discrete object following growth rules depending on TAF and inhibitor concentrations. Sun et al. [6] used a two-dimensional (2-D) discrete model of capillary formation, where each endothelial cell moves following equations of motion subject to both chemotaxis and haptotaxis. Das et al. [7] used a three-dimensional (3-D) lattice model, where endothelial cells are point particles on the lattice, and reaction-diffusion equations govern the dynamics of VEGF, ECM, and MMP. Bauer et al. [8] used the Cellular Potts Model (CPM) for a more detailed cell-based model of tumorinduced angiogenesis. The CPM describes spatially extended endothelial cells and their behaviors and interactions with their environment, including explicit, spatially inhomogeneous ECM, while a continuous equation describes the TAF dynamics. An extended model [9] highlights the effect of ECM topography on the spatial coordination of endothelial cells into sprouts. Shirinifard et al. [10] also used the CPM framework to simulate the long-term process of tumor angiogenesis and vascular tumor growth. Schugart et al. [11] developed a most sophisticated model of woundhealing angiogenesis. This model includes reactiondiffusion equations to describe the spatiotemporal dynamics of capillary tips, capillary sprouts, fibroblasts, inflammatory cells, inflammatory cells, and oxygen and ECM, respectively. The micro-vessels formed in tumor angiogenesis are not as well-regulated as normal vessels, lacking the support and maintenance of other cells such as smooth muscle cells and pericytes. These vessels are immature and irregular, have shunts blockages, and often are leaky. Stéphanou et al. [12] considered the influence of blood flow in vascular tumor growth. Cai et al. [13] modeled tumor avascular growth, angiogenesis, and blood perfusion. These models considered vessel remodeling instead of beginning stage of angiogenesis. As tumor angiogenesis is a continuous and long process, lasting a few weeks to a few years, the immature characteristics of the initial tumor vessels have a profound impact on further tumor angiogenesis. In particular the leaky nature of tumor vessels modifies the environment for both the endothelial cells and the tumor cells. This impact of leaky vessel on the later stage of tumor angiogenesis has not been studied, and is the focus of this paper. We aim to model the tumor-induced angiogenesis with blood perfusion during tumor angiogenesis. 2 Mathematical Model We developed a hybrid discrete-continuous model for tumor angiogenesis, with a discrete cell model on lattice for active endothelial sprout tip cells, and continuous equations describing the endothelial cell density field, as well as TAF and fibronectin fields. This treatment is based on the assumption that the motion of an individual endothelial cell located at the tip of a capillary sprout governs the motion of the whole sprout, similar to that in Ref. [4]. In vivo experiments using implant human

3 650 Tsinghua Science and Technology, December 2014, 19(6): tumor in mouse [14, 15] clearly demonstrated that the tip cells of the vessel sprout show little random motility, because the movement of individual cells is constrained by the surrounding tissue [16]. This observation allows us to omit the influence of random motility on endothelial cell migration. Contrary to some previous models (e.g., Ref. [4]), where only the tip cell is allowed to proliferate, and some other models (e.g., Ref. [8]), where only the cells behind the tip are allowed to proliferate, we simply assume that all endothelial cells of the new micro-vessel can proliferate. We denote the endothelial cell density by n and the equation for endothelial cell density D kn 1 C c nrc r.nrf / (1) It shows that the variation of the endothelial cell density with time t depends on the proliferation of endothelial cells with a proliferation rate k, the chemotaxis to the TAF (c), and the haptotaxis to fibronectin (f ). In Eq. (1), is the chemotaxis coefficient, and is the haptotaxis coefficient, both are positive; reflects the chemotaxis sensitivity to TAF and is also a positive constant. This model of endothelial cell density is different from all previous models where proliferation and migration were combined as a diffusion term of the cell density. We included the proliferation term explicitly, disentangling the proliferation and migration effects, which allowed us to separately examine the different mechanisms on angiogenesis. We can rewrite Eq. (1) in terms " rc D k C 1 C c 2 rc 1 C c C rf # r 2 c r 2 f n 1 C c rn (2) The TAF diffuses in the tissue and is absorbed by the endothelial cells. We describe the dynamics of TAF with this D D cr 2 c nc (3) where c is the TAF concentration, D c is the diffusion coefficient of TAF, is the rate of the TAF uptake by the endothelial cells. Because diffusion timescale is much faster than those for cell migration and molecular update by the cells, we can safely assume that the distribution of TAF is at steady state except at the location and time when cell uptake occurs. Hence we can simplify the equation for the TAF concentration D nc Assuming the source of TAF is a tumor of 1-2 mm in size, and the hypoxic cells locate around 0.3 mm from the center, outside the necrotic core [17], we chose the initial distribution( of TAF concentration as 1; 0 r 0:3I c.x; y; 0/ D.1:3 r/ 2 (5) ; r > 0:3 where r is the distance to tumor center. The initial distribution of TAF is shown in Fig. 1a. Fibronectin, representing the ECM, can be produced and degraded by endothelial cell, remodeled because of migration of cells. But for simplicity, as we focus on the TAF and blood perfusion on angiogenesis, we assumed that the distribution of fibronectin is at a steady D 0 We borrowed the initial concentration profile of fibronectin from Ref. [4], f.x; y; 0/ D k 1 e x2 (7) where k 1 and are positive constants. This initial distribution of fibronectin is shown in Fig. 1b, where the fibronectin concentration is higher at the parent vessel than near the tumor. We also examined another scenario (Fig. 1c) where the fibronectin concentration is higher near the tumor than near the parent vessel. Our simulation domain is a lattice with grid size equals to 10 m, which makes the domain size 22 mm 2. The grid size corresponds to approximately the size of one endothelial cell. A solid tumor spheroid is located at the right side of the domain (not shown), serving as a source of the TAF, and a parent vessel is located at the left side of the domain (also not shown). Four sprout tips were present at the parent vessel as the initial endothelial cell density (Fig. 1d). We also assume that the capillary sprout cannot grow out the square domain, and use a constant value boundary condition, or Dirichlet boundary condition for cell density at all boundaries. Similar to the Anderson & Chaplain model [4], we used this set of rules for the sprout: A sprout tip can branch when (1) its age exceeds the branching age age th, (2) the endothelial cell density is greater than a threshold level n b, and (3) sufficient space is available around the sprout tip. After branching the old sprout stops growing, while the two new sprout tips begin to grow with their ages set to zero.

4 Junping Meng et al.: A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion 651 Fig. 1 Initial distributions of TAF concentration (a), fibronectin concentration (b, c), and endothelial cell density (d), in a simulation domain. The initial 4 sprout tip cells are at 0.3 mm, 0.8 mm, 1.3 mm, and 1.6 mm along the parent vessel. We also modeled anastomosis, the formation of loops by capillary sprouts, which is another important feature of angiogenesis. We allowed two types of anastomosis: tip-to-tip anastomosis and tip-to-sprout anastomosis. In tip-to-tip anastomosis, when a sprout tip meets another sprout tip, both the tips stop growing and form a loop. In tip-to-sprout anastomosis, when a sprout tip meets another existing sprout, the tip fuses with the sprout and stops growing. The model simulation follows the pseudo code in Algorithm 1. At every time step, each active sprout tip checks its neighboring empty sites. On a square lattice a tip has 4 nearest neighbors, but only 3 sites ahead of the tip are available, because a tip is always automatically followed by a sprout: All the sites where the tip has been is where the sprout is. The endothelial cell density n is set to be 1, the maximum value, for the sprout body. This treatment reflects the immature and leaky nature of the tumor vessel sprouts. The tip will only extend into a site where the endothelial cell density exceeds a threshold density n th, reflecting the requirement that the formation of micro-vessel requires a certain number of endothelial cells. If there are more than one site that have high enough cell density, then Algorithm 1 Algorithm description of the model for For every time step do Solve equations (2) and (4), update endothelial cell density and TAF concentration for For every sprout tip do if the state of the sprout tip is activated then if the branching condition is satisfied then The original sprout tip stops grow and two new sprout tips appear with age=0 else if there is room for a sprout tip to move into then Move into the position where the endothelial cell density exceeds the threshold value and is the highest, and increase the age of this sprout tip by 1 if the neighbor position has been occupied by a sprout tip then Tip-to-tip anastomosis happens and this tip becomes inactive end if else Tip-to-sprout anastomosis happens and this tip becomes inactive end if end if end if end for end for

5 652 Tsinghua Science and Technology, December 2014, 19(6): the sprout tip will choose the position with the highest density. In addition, the tip will check the branching and anastomosis rules to decide if it will branch or fuse with a neighboring sprout or tip. If a branching event should happen, the old tip extends into two new positions as two new tips with age=0. If a tip-to-tip or a tip-to-sprout anastomosis should happen, the tips involved become inactive. The cell density for the site of the old, inactive tip is set of maximum n=1. We then solve for Eqs. (2) and (4), update the TAF concentration field, c, as well and the endothelial cell density field, n. The new tips are then ready to explore its neighborhood again for the next time step. 3 Simulation Results Table 1 lists the parameters used in our simulations. The values of threshold endothelial cell densities, n b and n th, for sprout tip branching and extension, respectively, were chosen through trial and error to ensure the sprouts are continuous and without fragmentation that is nonbiological and is a possible simulation artifact. We simulated the evolution of micro-vessel morphology for 15 days, which is the typical timescale for tumor vasculature to develop. Figure 2 shows the snapshots of a simulation from the initial four sprout tips. In the beginning days, the sprout tips extend in parallel, before the sprouts start to spread to cover the space between initial sprouts. We can understand Table 1 Parameter values used in simulations. Parameter Value Source 0.6 Ref. [4] 0.38 Ref. [4] 0.34 Ref. [4] 0.1 Ref. [4] k 2 Ref. [18] k Ref. [4] 0.45 Ref. [4] age th 0.38 Ref. [4] n b 0.3 Estimated n th 0.3 Estimated this initial parallel growth as follows: As can be seen in Fig. 1a, the TAF concentration gradient along the y-axis, near the parent vessel, is shallow, as if the TAF is from a line source (or very large tumor). The endothelial cell tips can only sense the TAF gradient along the x-axis. Hence the tips extend up-gradient toward tumor along the x-axis until the gradient along the y-axis is large enough, when the tips start to extend along the y-axis and the sprouts bend toward the center. As the sprouts extend toward the tumor, more tips become old enough to branch. When sprout density increases and they extend close to each other, anastomosis also happens. The simulation reproduces the so-called brush border effect : the closer to the tumor, the denser the sprouts. The fibronectin concentration field does not have any gradient along the Fig. 2 Snapshots of a typical angiogenesis simulation showing the evolution of capillary network from initial 4 sprout tips, in 15 days. Simulation domain is or 22 mm 2.

6 Junping Meng et al.: A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion 653 y-axis, hence has no influence on sprout morphological dynamics. As its gradient is in the opposite direction of the TAF, fibronectin acts to hold back the sprout tip cells and slows down sprout extension. Now with such a tumor angiogenesis model in place, we could examine these mechanisms individually using the model. We call the simulations that generated Fig. 2 as baseline, and the parameters used as baseline parameters. First we turned off chemotaxis by setting the chemotaxis coefficient to zero and keeping the rest the same as in baseline. The sprouts did not grow at all (results not shown), suggesting that chemotaxis to TAF is an essential mechanism for angiogenesis. Next we turned off cell proliferation, while keeping the rest the same as those in baseline parameters. Figure 3 shows the snapshots of capillary network in the absence of cell proliferation. After the initial few days (about 6 days), the micro-vessel barely grows: the extension of sprouts stagnates. Two possible explanations are: Angiogenesis cannot occur in the absence of cell proliferation, as suggested by Sholley et al. [19] in their experimental model, or without proliferation, the chemotaxis and haptotaxis effects, working in opposite directions, cancel each other in this model. We address this question below. To determine the effect of haptotaxis on the sprout formation, we turned off endothelial cells haptotaxis to fibronectin by setting =0. Figure 4 shows the evolution of capillary network formation without haptotaxis. The striking difference is that the sprout cells reach the tumor in about 4 days, which is much faster compared to the baseline simulation (Fig. 2). This result indicates Fig. 3 Snapshots of capillary network formation in the absence of cell proliferation, with k=0. Parameters are otherwise the same as in Fig. 2. Fig. 4 Snapshots of capillary network formation in the absence of haptotaxis (=0), all other parameters are the same as in baseline simulation, Fig. 2.

7 654 Tsinghua Science and Technology, December 2014, 19(6): that haptotaxis to a fibronectin gradient could slow down the speed of sprout extension, which is quite easy to understand because the gradient for fibronectin is higher near the parent vessel and lower at the tumor (Fig. 1b). Haptotaxis to such a gradient would guide the sprout extension toward the parent vessel, away from the tumor. This original setting from Ref. [4] was designed to match the timing of the vessels reaching tumor in about 2 weeks. In the other scenario where fibronectin gradient is in the opposite direction, i.e., fibronectin is denser near the tumor (Fig. 1c), the simulations showed different results. When haptotaxis and chemotaxis work together, the sprouts extend a lot faster and can reach the tumor in 4.5 days (Fig. 5), resulting in less tortuous and less branchy vessels. If we turned off endothelial cell proliferation (Fig. 6), we see that different from Fig. 3, the sprouts are able to keep growing and reach the tumor. With haptotaxis and chemotaxis working together to grow the sprouts, the extension speeds with and without endothelial cell proliferation turn out to be very similar (compare Figs. 5 and 6). This result clearly indicates that cell proliferation is not absolutely essential in sprout extension. Cell proliferation would rescue the sprouts if chemotaxis and haptotaxis work in opposite directions causing the sprout growth stagnation; otherwise, the cell density changes due to chemotaxis and haptotaxis, by cell migration and cell stretching, is sufficient to generate the elongated and continuous sprouts, without cell proliferation. Figure 7 shows the snapshots of the capillary network Fig. 5 Snapshots of capillary network formation when haptotaxis and chemotaxis work together to extend sprout. Fig. 6 Snapshots of capillary network formation when haptotaxis and chemotaxis work together in the absence of cell proliferation with k=0. Fig. 7 Snapshots of capillary network in the absence of both cell proliferation and haptotaxis.

8 Junping Meng et al.: A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion 655 in the absence of endothelial cell proliferation and haptotaxis. The capillary network did not stall, but the sprout tips extend slower than in Figs. 5 and 6. This result further proves that endothelial cell proliferation is not necessary to start the capillary formation. Chemotaxis to TAF gradient alone can result in sprout extension. Haptotaxis to fibronectin and endothelial cell proliferation both will facilitate the process. 4 Disscusion Tumor-induced angiogenesis is a highly important step in cancer development. We developed a mathematical model to help shed light into the mechanisms of tumor angiogenesis. The model is a hybrid discrete and continuous model, where the tip cells are discretized cell density modeled as individual cells, and the cell density, TAF, and fibronectin are three continuous fields following partial differential equations. The new features of this model include (1) a complete and explicit separation of individual mechanisms, including proliferation, TAF chemotaxis, and fibronectin haptotaxis, and (2) considering the phenomenon of blood perfusion after the initial formation of micro-vessels. The simulation results reproduced brush border effects when all mechanisms are considered. When we examined the effects of each mechanism by shutting off individual mechanisms in the simulations, we found that chemotaxis to TAF is the key driving mechanisms for the extension of sprout cell, and without chemotaxis (or TAF) angiogenesis cannot happen; TAF gradient is essential in activating endothelial cells. This result agrees with the current understanding that angiogenesis starts with the overexpression of TAFs, and that targeting TAF (e.g., using bevacizumab, the antibody for vascular endothelial growth factor) is a major component of cancer chemotherapy. We showed that endothelial proliferation is not absolutely necessary for sprout extension, provided that chemotaxis and haptotaxis work together to cause cell migration and stretching. This conclusion was exaggerated in this model because we do not consider cell size in the differential equations nor as points on the grid. If we consider the realistic cell size and shape, a cell can only be stretched to a certain length (or aspect ratio). Endothelial cell proliferation would be necessary to ensure successful tumor angiogenesis. We also have a clear understanding of the effect of haptotaxis: Its gradient provides additional guidance to sprout extension. When the ECM gradient is opposite of TAF gradient, turning off haptotaxis enhances angiogenesis; when the ECM gradient is the same as TAF gradient, turning off haptotaxis slows down angiogenesis. The role of ECM in cell migration is multi-fold. On the one hand, the ECM provides contact guidance for migrating cells, helping the migration; on the other hand, the cells will need to bind to the ECM when they migrate, and the binding and unbinding of cell surface receptor (integrins) and ECM proteins take time and energy. More recent research also pointed out that ECM mediates molecular signals between cells, inducing cell differentiation and physiological changes [20]. These different actions have opposite effects on cell migration speed. Hence there is an optimal ECM density where the cell migrates most efficiently. In addition, ECM is heterogeneous, and its topography alone can influence cell migration and sprout formation [9]. Our treatment of haptotaxis to ECM in this model is a simple consideration of gradient following. More sophisticated model of cell-ecm interactions, especially in biomechanics and mechanosensing will allow for more realistic understanding of ECM in tumor angiogenesis. The same understanding also applies to tumor invasion, where the basic biology of cell-ecm interactions between tumor cell and ECM should be the same as between endothelial cells and ECM. In summary, we have developed a mathematical model of tumor angiogenesis that offers some new insight into tumor angiogenesis. Further development in terms of cell-ecm interaction will be necessary to make the model more realistic. Also the model is completely deterministic; it would be interesting to investigate the role of stochasticity, in both cell decision-making and cell migration, in tumor angiogenesis. Acknowledgements This work was supported by the National Natural Science Foundation of China (No ). References [1] J. Folkman, Tumor angiogenesis: A possible control point in tumor growth, Annals of Internal Medicine, vol. 82, no. 1, pp , 1995.

9 656 Tsinghua Science and Technology, December 2014, 19(6): [2] P. Carmeliet and R. K. Jain, Angiogenesis in cancer and otherdiseases, Nature, vol. 407, no. 6801, pp , [3] H. Gerhardt, M. Golding, M. Fruttiger, C. Ruhrberg, A. Lundkvist, A. Abramsson, M. Jeltsch, C. Mitchell, K. Alitalo, D. Shima, et al., VEGF guides angiogenic sprouting utilizing endothelial tip cell filopodia, The Journal of Cell Biology, vol. 161, no. 6, pp , [4] A. R. A. Anderson and M. A. J. Chaplain, Continuous and discrete mathematical models of tumor-induced angiogenesis, Bulletin of Mathematical Biology, vol. 60, no. 5, pp , [5] H. A. Harrington, M. Maier, L. Naidoo, N. Whitaker, and P. G. Kevrekidis, A hybrid model for tumor-induced angiogenesis in the cornea in the presence of inhibitors, Mathematical and Computer Modelling, vol. 46, no. 3, pp , [6] S. Y. Sun, M. F. Wheeler, M. Obeyesekere, and C. Patrick Jr, Nonlinear behaviors of capillary formation in a deterministic angiogenesis model, Nonlinear Analysis: Theory, Methods & Applications, vol. 63, no. 5, pp. e2237- e2246, [7] A. Das, D. Lauffenburger, H. Asada, and R. D. Kamm, A hybrid continuum discrete modelling approach to predict and control angiogenesis: Analysis of combinatorial growth factor and matrix effects on vessel-sprouting morphology, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 368, no. 1921, pp , [8] A. L. Bauer, T. L. Jackson, and Y. Jiang, A cell-based model exhibiting branching and anastomosis during tumorinduced angiogenesis, Biophysical Journal, vol. 92, no. 9, pp , [9] A. L. Bauer, T. L. Jackson, and Y. Jiang, Topography of extracellular matrix mediates vascular morphogenesis and migration speeds in angiogenesis, PLoS Computational Biology, vol. 5, no. 7, p. e , [10] A. Shirinifard, J. S. Gens, B. L. Zaitlen, N. J. Popławski, M. Swat, and J. A. Glazier, 3D multi-cell simulation of tumor growth and angiogenesis, PLoS One, vol. 4, no. 10, p. e7190, [11] R. C. Schugart, A. Friedman, R. Zhao, and C. K. Sen, Wound angiogenesis as a function of tissue oxygen Junping Meng received her master s degree in computer science and engineering in 2014 from South China University of Technology. Her bachelor degree was received from Hebei University in tension: A mathematical model, Proceedings of the National Academy of Sciences, vol. 105, no. 7, pp , [12] A. Stéphanou, S. R. McDougall, A. R. A. Anderson, and M. A. J. Chaplain, Mathematical modelling of the influence of blood rheological properties upon adaptative tumour-induced angiogenesis, Mathematical and Computer Modelling, vol. 44, no. 1, pp , [13] Y. Cai, S. X. Xu, J. Wu, and Q. Long, Coupled modelling of tumour angiogenesis, tumour growth and blood perfusion, Journal of Theoretical Biology, vol. 279, no. 1, pp , [14] N. Paweletz and M. Knierim, Tumor-related angiogenesis, Critical Reviews in Oncology/Hematology, vol. 9, no. 3, pp , [15] S. Paku and N. Paweletz, First steps of tumor-related angiogenesis, Laboratory Investigation; A Journal of Technical Methods and Pathology, vol. 65, no. 3, pp , [16] M. A. Rupnick, C. L. Stokes, S. K. Williams, and D. A. Lauffenburger, Quantitative analysis of random motility of human microvessel endothelial cells using a linear underagarose assay, Laboratory Investigation; A Journal of Technical Methods and Pathology, vol. 59, no. 3, pp , [17] B. S. Kuszyk, F. M. Corl, F. N. Franano, D. A. Bluemke, L. V. Hofmann, B. J. Fortman, and E. K. Fishman, Tumor transport physiology: Implications for imaging and imaging-guided therapy, American Journal of Roentgenology, vol. 177, no. 4, pp , [18] A. Lesart, B. Van Der Sanden, L. Hamard, F. Estève, and A. Stéphanou, On the importance of the submicrovascular network in a computational model of tumour growth, Microvascular Research, vol. 84, no. 2, pp , [19] N. M. Sholley, G. P. Ferguson, H. R. Seibel, J. L. Montour, and J. D. Wilson, Mechanisms of neovascularization, Vascular sprouting can occur without proliferation of endothelial cells, Laboratory Investigation; A Journal of Technical Methods and Pathology, vol. 51, no. 6, pp , [20] R. O. Hynes, The extracellular matrix: Not just pretty fibrils, Science, vol. 326, no. 5957, pp , Shoubin Dong is a professor of School of Computer Science and Engineering of South China University of Technology (SCUT). Her main research areas include high performance computing, big data processing, and next generation Internet. Dr. Dong received her PhD degree in electronic engineering in 1994 from University of Science and Technology of China (USTC). She was a visiting scholar of School of Computer Science of Carnegie Mellon University (CMU) during She is now the deputy director of Communication and Computer Network Laboratory (CCNL) of Guangdong Province, China.

10 Junping Meng et al.: A Hybrid Mathematical Model of Tumor-Induced Angiogenesis with Blood Perfusion 657 Liqun Tang is a professor in the Department of Engineering Mechanics at South China University of Technology, China. He received his PhD degree from University of Science and Technology of China in He was ever a research associate in the Hong Kong Polytechnic University and visiting scholar in the Texas A&M University. His research interests are mechanics of materials, damage mechanics, and meso mechanics. He focuses on: (1) meso-structural features of heterogeneous materials and numerical modelling; (2) long-term health monitoring of structures and structural damage identification; (3) constitutive relations of soft matters; and (4) new kinds of engineering materials and their constitutive relations. Yi Jiang received her PhD degree in physics from University of Notre Dame in 1998, and was a research scientist at Los Alamos National Laboratory until she joined Georgia State University in 2011, where she is an associate professor in the Department of Mathematics and Statistics. Her research lies in the general direction of mathematical biology and biophysics. Her current focus is in developing multi-scale models of cancer development, including tumor growth, angiogenesis, invasion, and therapy.

Simulating the Tumor Growth with Cellular Automata Models

Simulating the Tumor Growth with Cellular Automata Models Simulating the Tumor Growth with Cellular Automata Models S. Zouhri Université Hassan II- Mohammédia, Faculté des Sciences Ben M'sik Département de Mathématiques, B.7955, Sidi Othmane, Casablanca, Maroc

More information

A Cell-Based Model Exhibiting Branching and Anastomosis during Tumor-Induced Angiogenesis

A Cell-Based Model Exhibiting Branching and Anastomosis during Tumor-Induced Angiogenesis Biophysical Journal Volume 92 May 2007 3105 3121 3105 A Cell-Based Model Exhibiting Branching and Anastomosis during Tumor-Induced Angiogenesis Amy L. Bauer,* Trachette L. Jackson,* and Yi Jiang y *Department

More information

Modeling Tumor-Induced Angiogenesis in the Cornea. An Honors Thesis. Presented by Heather Harrington. Group members Marc Maier Lé Santha Naidoo

Modeling Tumor-Induced Angiogenesis in the Cornea. An Honors Thesis. Presented by Heather Harrington. Group members Marc Maier Lé Santha Naidoo Modeling Tumor-Induced Angiogenesis in the Cornea An Honors Thesis Presented by Heather Harrington Group members Marc Maier Lé Santha Naidoo Submitted May 2005 Guidance Committee Approval: Professor Nathaniel

More information

A Mathematical Model for Capillary Network Formation in the Absence of Endothelial Cell Proliferation

A Mathematical Model for Capillary Network Formation in the Absence of Endothelial Cell Proliferation Pergamon Appl. Math. Lett. Vol. 11, No. 3, pp. 109-114, 1998 Copyright(~)1998 Elsevier Science Ltd Printed in Great Britain. All rights reserved 0893-9659/98 $19.00 + 0.00 PII: S0893-9659(98)00041-X A

More information

Multiscale modelling and nonlinear simulation of vascular tumour growth

Multiscale modelling and nonlinear simulation of vascular tumour growth J. Math. Biol. (2009) 58:765 798 DOI 10.1007/s00285-008-0216-9 Mathematical Biology Multiscale modelling and nonlinear simulation of vascular tumour growth Paul Macklin Steven McDougall Alexander R. A.

More information

Mathematical biology From individual cell behavior to biological growth and form

Mathematical biology From individual cell behavior to biological growth and form Mathematical biology From individual cell behavior to biological growth and form Lecture 8: Multiscale models Roeland Merks (1,2) (1) Centrum Wiskunde & Informatica, Amsterdam (2) Mathematical Institute,

More information

Citation: Chen, Wei (2015) Modelling of Tumour-induced Angiogenesis. Doctoral thesis, Northumbria University.

Citation: Chen, Wei (2015) Modelling of Tumour-induced Angiogenesis. Doctoral thesis, Northumbria University. Citation: Chen, Wei (2015) Modelling of Tumour-induced Angiogenesis. Doctoral thesis, Northumbria University. This version was downloaded from Northumbria Research Link: http://nrl.northumbria.ac.uk/30235/

More information

Mathematical Modelling of Flow Through Vascular Networks: Implications for Tumour-induced Angiogenesis and Chemotherapy Strategies

Mathematical Modelling of Flow Through Vascular Networks: Implications for Tumour-induced Angiogenesis and Chemotherapy Strategies Bulletin of Mathematical Biology (2002) 64, 673 702 doi:10.1006/bulm.2002.0293 Available online at http://www.idealibrary.com on Mathematical Modelling of Flow Through Vascular Networks: Implications for

More information

Modeling Three-dimensional Invasive Solid Tumor Growth in Heterogeneous Microenvironment under Chemotherapy

Modeling Three-dimensional Invasive Solid Tumor Growth in Heterogeneous Microenvironment under Chemotherapy Modeling Three-dimensional Invasive Solid Tumor Growth in Heterogeneous Microenvironment under Chemotherapy Hang Xie 1, Yang Jiao 2, Qihui Fan 3, Miaomiao Hai 1, Jiaen Yang 1, Zhijian Hu 1, Yue Yang 4,

More information

Mathematical modelling of spatio-temporal glioma evolution

Mathematical modelling of spatio-temporal glioma evolution Papadogiorgaki et al. Theoretical Biology and Medical Modelling 213, 1:47 RESEARCH Open Access Mathematical modelling of spatio-temporal glioma evolution Maria Papadogiorgaki 1*, Panagiotis Koliou 2, Xenofon

More information

Cell-based modeling of angiogenic blood vessel sprouting

Cell-based modeling of angiogenic blood vessel sprouting Cell-based modeling of angiogenic blood vessel sprouting Roeland Merks Biomodeling & Biosystems Analysis Centrum Wiskunde & Informatica - Life Sciences Netherlands Institute for Systems Biology Netherlands

More information

The Angiopoietin Axis in Cancer

The Angiopoietin Axis in Cancer Ang2 Ang1 The Angiopoietin Axis in Cancer Tie2 An Overview: The Angiopoietin Axis Plays an Essential Role in the Regulation of Tumor Angiogenesis Growth of a tumor beyond a limiting size is dependent upon

More information

Combination of The Cellular Potts Model and Lattice Gas Cellular Automata For Simulating The Avascular Cancer Growth

Combination of The Cellular Potts Model and Lattice Gas Cellular Automata For Simulating The Avascular Cancer Growth Combination of The Cellular Potts Model and Lattice Gas Cellular Automata For Simulating The Avascular Cancer Growth Mehrdad Ghaemi 1, Amene Shahrokhi 2 1 Department of Chemistry, Teacher Training University,

More information

arxiv: v1 [q-bio.cb] 10 Feb 2016

arxiv: v1 [q-bio.cb] 10 Feb 2016 Development of a Computationally Optimized Model of Cancer-induced Angiogenesis through Specialized Cellular Mechanics arxiv:1602.03244v1 [q-bio.cb] 10 Feb 2016 Abstract Dibya Jyoti Ghosh California, United

More information

Multiscale Modelling and Nonlinear Simulation of Vascular Tumour Growth

Multiscale Modelling and Nonlinear Simulation of Vascular Tumour Growth Journal of Mathematical Biology manuscript No. (will be inserted by the editor) Multiscale Modelling and Nonlinear Simulation of Vascular Tumour Growth Paul Macklin Steven McDougall Alexander R. A. Anderson

More information

Angiogenesis and vascular remodelling in normal and cancerous tissues

Angiogenesis and vascular remodelling in normal and cancerous tissues J. Math. Biol. (29) 58:689 721 DOI 1.17/s285-8-213-z Mathematical Biology Angiogenesis and vascular remodelling in and cancerous tissues Markus R. Owen Tomás Alarcón Philip K. Maini Helen M. Byrne Received:

More information

THREE-DIMENSIONAL MODEL OF METASTATIC TUMOR ANGIOGENESIS IN RESPONSE TO ANTI-ANGIOGENIC FACTOR ANGIOSTATIN

THREE-DIMENSIONAL MODEL OF METASTATIC TUMOR ANGIOGENESIS IN RESPONSE TO ANTI-ANGIOGENIC FACTOR ANGIOSTATIN Journal of Mechanics in Medicine and Biology Vol. 17, No. 6 (217) 17594 (12 pages) c The Author(s) DOI: 1.1142/S2195194175944 THREE-DIMENSIONAL MODEL OF METASTATIC TUMOR ANGIOGENESIS IN RESPONSE TO ANTI-ANGIOGENIC

More information

Culturing embryonic tissues in the computer

Culturing embryonic tissues in the computer Culturing embryonic tissues in the computer Blood vessel development Roeland Merks Biomodeling & Biosystems Analysis CWI, Life Sciences and Netherlands Institute for Systems Biology Biological development

More information

arxiv: v1 [q-bio.cb] 7 Jun 2016

arxiv: v1 [q-bio.cb] 7 Jun 2016 1 arxiv:1606.02167v1 [q-bio.cb] 7 Jun 2016 Integrative modeling of sprout formation in angiogenesis: coupling the VEGFA-Notch signaling in a dynamic stalk-tip cell selection Sotiris A.Prokopiou 1, Markus

More information

Virtual Melanoma: When, Where and How Much to Cut Yang Kuang, Arizona State University

Virtual Melanoma: When, Where and How Much to Cut Yang Kuang, Arizona State University Virtual Melanoma: When, Where and How Much to Cut Yang Kuang, Arizona State University Based on: Eikenberry S, Thalhauser C, Kuang Y. PLoS Comput Biol. 2009, 5:e1000362. Mathematical Modeling of Melanoma

More information

A Coupled Finite Element Model of Tumor Growth and Vascularization

A Coupled Finite Element Model of Tumor Growth and Vascularization A Coupled Finite Element Model of Tumor Growth and Vascularization Bryn A. Lloyd, Dominik Szczerba, and Gábor Székely Computer Vision Laboratory, ETH Zürich, Switzerland {blloyd, domi, szekely}@vision.ee.ethz.ch

More information

A Cell-based Model of Endothelial Cell Migration, Proliferation and Maturation During Corneal Angiogenesis

A Cell-based Model of Endothelial Cell Migration, Proliferation and Maturation During Corneal Angiogenesis Bulletin of Mathematical Biology (2010) 72: 830 868 DOI 10.1007/s11538-009-9471-1 ORIGINAL ARTICLE A Cell-based Model of Endothelial Cell Migration, Proliferation and Maturation During Corneal Angiogenesis

More information

A model mechanism for the chemotactic response of endotheliai cells to tumour angiogenesis factor

A model mechanism for the chemotactic response of endotheliai cells to tumour angiogenesis factor IMA Journal of Mathematics Applied in Medicine & Biology (1993) 10, 149-168 A model mechanism for the chemotactic response of endotheliai cells to tumour angiogenesis factor M. A. J. CHAPLAIN AND A. M.

More information

BMBF Forsys Partner Project: A Systems Biology Approach towards Predictive Cancer Therapy

BMBF Forsys Partner Project: A Systems Biology Approach towards Predictive Cancer Therapy ling and ling and BMBF Forsys Partner Project: A Systems Biology Approach towards Predictive Cancer Therapy H. Perfahl, A. Lapin, M. Reuss Germany holger.perfahl@ibvt.uni-stuttgart.de 1 ling and Cooperation

More information

CANCER is to be the leading cause of death throughout the

CANCER is to be the leading cause of death throughout the IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOL. 9, NO. 1, JANUARY/FEBRUARY 2012 169 Multiobjective Optimization Based-Approach for Discovering Novel Cancer Therapies Arthur W. Mahoney,

More information

c 2005 Society for Industrial and Applied Mathematics

c 2005 Society for Industrial and Applied Mathematics MULTISCALE MODEL. SIMUL. Vol. 3, No. 2, pp. 4 475 c 05 Society for Industrial and Applied Mathematics A MULTIPLE SCALE MODEL FOR TUMOR GROWTH T. ALARCÓN, H. M. BYRNE, AND P. K. MAINI Abstract. We present

More information

Cover Page. The handle holds various files of this Leiden University dissertation.

Cover Page. The handle   holds various files of this Leiden University dissertation. Cover Page The handle http://hdl.handle.net/1887/28967 holds various files of this Leiden University dissertation. Author: Palm, Margaretha Maria (Margriet) Title: High-throughput simulation studies of

More information

arxiv: v3 [q-bio.to] 9 Apr 2009

arxiv: v3 [q-bio.to] 9 Apr 2009 MATHEMATICAL BIOSCIENCES AND ENGINEERING Volume xx, Number 0xx, xx 20xx http://www.mbejournal.org/ pp. 1 xx A SPATIAL MODEL OF TUMOR-HOST INTERACTION: APPLICATION OF CHEMOTHERAPY arxiv:0810.1024v3 [q-bio.to]

More information

Effect of a nutrient mixture on the localization of extracellular matrix proteins in HeLa human cervical cancer xenografts in female nude mice

Effect of a nutrient mixture on the localization of extracellular matrix proteins in HeLa human cervical cancer xenografts in female nude mice Effect of a nutrient mixture on the localization of extracellular matrix proteins in HeLa human cervical cancer xenografts in female nude mice Publication from the Dr. Rath Research Institute Experimental

More information

Daphne Manoussaki 1. Introduction

Daphne Manoussaki 1. Introduction ESAIM: PROCEEDINGS, November 2002, Vol.12, 108-114 M.Thiriet, Editor MODELING AND SIMULATION OF THE FORMATION OF VASCULAR NETWORKS Daphne Manoussaki 1 Abstract. The formation of blood vessels is driven

More information

Mathematical Model Solid Tumor at the Stage of Angiogenesis with Immune Response

Mathematical Model Solid Tumor at the Stage of Angiogenesis with Immune Response Mathematical Model Solid Tumor at the Stage of Angiogenesis with Immune esponse Deep Shikha Dixit, Deepak Kumar, Sanjeev Kr,ajesh Johri. Department of Mathematics, CET IILM, Gr. Noida.. Department of Mathematics,

More information

Simulation of Chemotractant Gradients in Microfluidic Channels to Study Cell Migration Mechanism in silico

Simulation of Chemotractant Gradients in Microfluidic Channels to Study Cell Migration Mechanism in silico Simulation of Chemotractant Gradients in Microfluidic Channels to Study Cell Migration Mechanism in silico P. Wallin 1*, E. Bernson 1, and J. Gold 1 1 Chalmers University of Technology, Applied Physics,

More information

Emergent Behaviors from a Cellular Automaton Model for Invasive Tumor Growth in Heterogeneous Microenvironments

Emergent Behaviors from a Cellular Automaton Model for Invasive Tumor Growth in Heterogeneous Microenvironments Emergent Behaviors from a Cellular Automaton Model for Invasive Tumor Growth in Heterogeneous Microenvironments Yang Jiao 1, Salvatore Torquato 1,2 * 1 Physical Science in Oncology Center, Princeton Institute

More information

Mathematics Meets Oncology

Mathematics Meets Oncology .. Mathematics Meets Oncology Mathematical Oncology Philippe B. Laval Kennesaw State University November 12, 2011 Philippe B. Laval (Kennesaw State University)Mathematics Meets Oncology November 12, 2011

More information

MATHEMATICAL MODELLING OF TUMOUR DEVELOPMENT DURING ANGIOGENESIS AND TREATMENT BY ANTI-ANGIOGENESIS

MATHEMATICAL MODELLING OF TUMOUR DEVELOPMENT DURING ANGIOGENESIS AND TREATMENT BY ANTI-ANGIOGENESIS MATHEMATICAL MODELLING OF TUMOUR DEVELOPMENT DURING ANGIOGENESIS AND TREATMENT BY ANTI-ANGIOGENESIS A DISSERTATION SUBMITTED TO THE UNIVERSITY OF KWAZULU-NATAL FOR THE DEGREE OF MASTER OF SCIENCE IN THE

More information

A Review of Cellular Automata Models. of Tumor Growth

A Review of Cellular Automata Models. of Tumor Growth International Mathematical Forum, 5, 2010, no. 61, 3023-3029 A Review of Cellular Automata Models of Tumor Growth Ankana Boondirek Department of Mathematics, Faculty of Science Burapha University, Chonburi

More information

Bystander cells enhance NK cytotoxic efficiency by reducing search time

Bystander cells enhance NK cytotoxic efficiency by reducing search time Bystander cells enhance NK cytotoxic efficiency by reducing search time Xiao Zhou 1, Renping Zhao 1, Karsten Schwarz 2, Matthieu Mangeat 2,4, Eva C. Schwarz 1, Mohamed Hamed 3,5, Ivan Bogeski 1, Volkhard

More information

Tissue renewal and Repair. Nisamanee Charoenchon, PhD Department of Pathobiology, Faculty of Science

Tissue renewal and Repair. Nisamanee Charoenchon, PhD   Department of Pathobiology, Faculty of Science Tissue renewal and Repair Nisamanee Charoenchon, PhD Email: nisamanee.cha@mahidol.ac.th Department of Pathobiology, Faculty of Science Topic Objectives 1. Describe processes of tissue repair, regeneration

More information

Block-upscaling of transport in heterogeneous aquifers

Block-upscaling of transport in heterogeneous aquifers 158 Calibration and Reliability in Groundwater Modelling: From Uncertainty to Decision Making (Proceedings of ModelCARE 2005, The Hague, The Netherlands, June 2005). IAHS Publ. 304, 2006. Block-upscaling

More information

I TESSUTI: Dott.ssa Liliana Belgioia Università degli Studi di Genova

I TESSUTI: Dott.ssa Liliana Belgioia Università degli Studi di Genova I TESSUTI: 1. Repair, Radiosensitivity, Recruitment, Repopulation, Reoxygenation 2. Acute and chronic hypoxia 3. Tissue microenvironment and tissue organization Dott.ssa Liliana Belgioia Università degli

More information

Multiscale Models of Solid Tumor Growth and Angiogenesis: The effect of the microenvironment

Multiscale Models of Solid Tumor Growth and Angiogenesis: The effect of the microenvironment Multiscale Models of Solid Tumor Growth and Angiogenesis: The effect of the microenvironment John Lowengrub Dept Math and Biomed Eng., UCI P. Macklin, Ph.D. 2007 (expected); Vittorio Cristini (UCI/UT Health

More information

A Dynamic model of Pulmonary Vein Electrophysiology. Harry Green 2 nd year Ph.D. student University of Exeter

A Dynamic model of Pulmonary Vein Electrophysiology. Harry Green 2 nd year Ph.D. student University of Exeter A Dynamic model of Pulmonary Vein Electrophysiology Harry Green 2 nd year Ph.D. student University of Exeter Background to the Project Cardiac disease is the leading cause of death in most developed countries

More information

AUTOMATIC MEASUREMENT ON CT IMAGES FOR PATELLA DISLOCATION DIAGNOSIS

AUTOMATIC MEASUREMENT ON CT IMAGES FOR PATELLA DISLOCATION DIAGNOSIS AUTOMATIC MEASUREMENT ON CT IMAGES FOR PATELLA DISLOCATION DIAGNOSIS Qi Kong 1, Shaoshan Wang 2, Jiushan Yang 2,Ruiqi Zou 3, Yan Huang 1, Yilong Yin 1, Jingliang Peng 1 1 School of Computer Science and

More information

MOSAIC: A Multiscale Model of Osteogenesis and Sprouting Angiogenesis with Lateral Inhibition of Endothelial Cells

MOSAIC: A Multiscale Model of Osteogenesis and Sprouting Angiogenesis with Lateral Inhibition of Endothelial Cells MOSAIC: A Multiscale Model of Osteogenesis and Sprouting Angiogenesis with Lateral Inhibition of Endothelial Cells Aurélie Carlier 1,2,3, Liesbet Geris 2,3, Katie Bentley 4, Geert Carmeliet 5, Peter Carmeliet

More information

Growing heterogeneous tumors in silico

Growing heterogeneous tumors in silico Growing heterogeneous tumors in silico Jana Gevertz 1, * and S. Torquato 1,2,3,4,5, 1 Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, USA 2 Department

More information

Modeling origin and natural evolution of low-grade gliomas

Modeling origin and natural evolution of low-grade gliomas Modeling origin and natural evolution of low-grade gliomas Mathilde Badoual Paris Diderot University, IMNC lab 2nd HTE workshop: Mathematical & Computer Modeling to study tumors heterogeneity in its ecosystem,

More information

Perfusion Physics. ICMRI2018 March 29-31, 2018 Grand Hilton Hotel, Seoul, Korea. Asian Forum Ⅱ: Perfusion MRI SY24-1.

Perfusion Physics. ICMRI2018 March 29-31, 2018 Grand Hilton Hotel, Seoul, Korea. Asian Forum Ⅱ: Perfusion MRI SY24-1. SY24-1 Perfusion Physics Hiroyuki Kabasawa MR Collaborations and Development, GE Healthcare, Tokyo, Japan Perfusion is referred as the blood supply to micro capillary in tissue. Perfusion parameter such

More information

In Silico Modelling of Tumour Margin Diffusion and Infiltration: Review of Current Status

In Silico Modelling of Tumour Margin Diffusion and Infiltration: Review of Current Status Computational and Mathematical Methods in Medicine Volume 2012, Article ID 672895, 16 pages doi:10.1155/2012/672895 Review Article In Silico Modelling of Tumour Margin Diffusion and Infiltration: Review

More information

Tumor cut segmentation for Blemish Cells Detection in Human Brain Based on Cellular Automata

Tumor cut segmentation for Blemish Cells Detection in Human Brain Based on Cellular Automata Tumor cut segmentation for Blemish Cells Detection in Human Brain Based on Cellular Automata D.Mohanapriya 1 Department of Electronics and Communication Engineering, EBET Group of Institutions, Kangayam,

More information

Unsupervised MRI Brain Tumor Detection Techniques with Morphological Operations

Unsupervised MRI Brain Tumor Detection Techniques with Morphological Operations Unsupervised MRI Brain Tumor Detection Techniques with Morphological Operations Ritu Verma, Sujeet Tiwari, Naazish Rahim Abstract Tumor is a deformity in human body cells which, if not detected and treated,

More information

Introduction to Targeted Therapy

Introduction to Targeted Therapy Introduction to Targeted Therapy Cancer remains the second leading cause of death in the United States, despite the significant advances in cancer therapy made over the past several decades. Many factors

More information

Stretching Cardiac Myocytes: A Finite Element Model of Cardiac Tissue

Stretching Cardiac Myocytes: A Finite Element Model of Cardiac Tissue Megan McCain ES240 FEM Final Project December 19, 2006 Stretching Cardiac Myocytes: A Finite Element Model of Cardiac Tissue Cardiac myocytes are the cells that constitute the working muscle of the heart.

More information

Mammogram Analysis: Tumor Classification

Mammogram Analysis: Tumor Classification Mammogram Analysis: Tumor Classification Term Project Report Geethapriya Raghavan geeragh@mail.utexas.edu EE 381K - Multidimensional Digital Signal Processing Spring 2005 Abstract Breast cancer is the

More information

Tissue repair. (3&4 of 4)

Tissue repair. (3&4 of 4) Tissue repair (3&4 of 4) What will we discuss today: Regeneration in tissue repair Scar formation Cutaneous wound healing Pathologic aspects of repair Regeneration in tissue repair Labile tissues rapid

More information

20 Mathematical modelling of angiogenesis and vascular adaptation 1

20 Mathematical modelling of angiogenesis and vascular adaptation 1 Studies in Multidisciplinarity, Volume 3 Editors: Ray Paton y and Laura McNamara ß 2006 Elsevier B.V. All rights reserved. 20 Mathematical modelling of angiogenesis and vascular adaptation 1 Tomas Alarcon

More information

Multiscale Models of Solid Tumor Growth and Angiogenesis: The effect of the microenvironment

Multiscale Models of Solid Tumor Growth and Angiogenesis: The effect of the microenvironment Multiscale Models of Solid Tumor Growth and Angiogenesis: The effect of the microenvironment John Lowengrub Dept Math and Biomed Eng., UCI P. Macklin, Ph.D. 2007 (expected); Vittorio Cristini (UCI/UT Health

More information

By: Zarna.A.Bhavsar 11/25/2008

By: Zarna.A.Bhavsar 11/25/2008 Transport of Molecules, Particles, and Cells in Solid Tumors A Model for Temporal heterogeneities of tumor blood flow By: Zarna.A.Bhavsar 11/25/2008 Contents Background Approaches Specific aims Developments

More information

ΜΟΝΤΕΛΑ ΔΙAΧΥΣΗΣ ΚΑΡΚΙΝΙΚΩΝ ΟΓΚΩΝ ΕΓΚΕΦΑΛΟΥ

ΜΟΝΤΕΛΑ ΔΙAΧΥΣΗΣ ΚΑΡΚΙΝΙΚΩΝ ΟΓΚΩΝ ΕΓΚΕΦΑΛΟΥ ΤΜΗΜΑ ΜΗΧΑΝΙΚΩΝ Η/Υ & ΠΛΗΡΟΦΟΡΙΚΗΣ - ΕΡΓΑΣΤΉΡΙΟ ΑΝΑΓΝΩΡΙΣΗς ΠΡΟΤΥΠΩΝ ΜΟΝΤΕΛΑ ΔΙAΧΥΣΗΣ ΚΑΡΚΙΝΙΚΩΝ ΟΓΚΩΝ ΕΓΚΕΦΑΛΟΥ Σ. Λυκοθανάσης, Καθηγητής Α. Κορφιάτη, Μηχ/κος Η/Υ & Πληρ/κής (ΚΕΟ 3) This research has

More information

Heterotypy and Angiogenesis

Heterotypy and Angiogenesis Heterotypy and Angiogenesis Tumors are perpetual wounds 1. Normally stroma and epithelia converse at a distance. 2. Juxtaposition of stroma and epithelia is indicative of tissue damage. 4. Activate strategies

More information

A Model for Glioma Growth

A Model for Glioma Growth A Model for Glioma Growth EVGENIY KHAIN, 1 LEONARD M. SANDER, 1 AND ANDREW M. STEIN 2 1 Department of Physics and Michigan Center for Theoretical Physics, The University of Michigan, Ann Arbor, Michigan

More information

Integrative models of vascular remodeling during tumor growth Heiko Rieger and Michael Welter

Integrative models of vascular remodeling during tumor growth Heiko Rieger and Michael Welter Advanced Review Integrative models of vascular remodeling during tumor growth Heiko Rieger and Michael Welter Malignant solid tumors recruit the blood vessel network of the host tissue for nutrient supply,

More information

Evolution of cell motility in an. individual-based model of tumour growth

Evolution of cell motility in an. individual-based model of tumour growth Evolution of cell motility in an individual-based model of tumour growth P. Gerlee a,, A.R.A. Anderson b a Niels Bohr Institute, Center for Models of Life, Blegdamsvej 17, 2100 Copenhagen Ø, Denmark b

More information

Weather Cancer. Problem: Wanted: prediction But: difficult Why? Complex systems, i.e. many agents agents, feedback dynamics.

Weather Cancer. Problem: Wanted: prediction But: difficult Why? Complex systems, i.e. many agents agents, feedback dynamics. Weather Cancer Financial markets Problem: Wanted: prediction But: difficult Why? Complex systems, i.e. many agents agents, feedback dynamics ? Analyzing emergent behaviour in cellular automaton models

More information

Multiscale Cancer Modeling

Multiscale Cancer Modeling Preprint notes: This is a preprint of an article in review by Annual Review of Biomedical Engineering. The preprint is posted in full accordance of the journal s copyright policies. Please note that this

More information

Signaling Vascular Morphogenesis and Maintenance

Signaling Vascular Morphogenesis and Maintenance Signaling Vascular Morphogenesis and Maintenance Douglas Hanahan Science 277: 48-50, in Perspectives (1997) Blood vessels are constructed by two processes: vasculogenesis, whereby a primitive vascular

More information

Date: Thursday, 1 May :00AM

Date: Thursday, 1 May :00AM Cancer can give you Maths! Transcript Date: Thursday, 1 May 2008-12:00AM CANCER CAN GIVE YOU MATHS! Professor Philip Maini I would like to start off by thanking Gresham College for this invitation. I am

More information

Chapter 6. Villous Growth

Chapter 6. Villous Growth Core Curriculum in Perinatal Pathology Chapter 6 Villous Growth Overview of vasculogenesis and angiogenesis Vasculogenesis Extraembryonic Vasculogenesis Angiogenesis Branching angiogenesis Sprouting angiogenesis

More information

Comparison of a Persistent Random Walk to 3D Chemo taxis in. MDA-MB-231 Cancer Cells

Comparison of a Persistent Random Walk to 3D Chemo taxis in. MDA-MB-231 Cancer Cells Comparison of a Persistent Random Walk to 3D Chemo taxis in MDA-MB-231 Cancer Cells Cameron Thayer-Freeman Advisor: Dr. Bo Sun 2015 Abstract This research specifically examines the collective motion of

More information

Mechanisms of Resistance to Antiangiogenic. Martin J. Edelman, MD University of Maryland Greenebaum Cancer Center Dresden, 2012

Mechanisms of Resistance to Antiangiogenic. Martin J. Edelman, MD University of Maryland Greenebaum Cancer Center Dresden, 2012 Mechanisms of Resistance to Antiangiogenic Agents Martin J. Edelman, MD University of Maryland Greenebaum Cancer Center Dresden, 2012 Angiogenesis: A fundamental attribute of cancer Premise of Anti-angiogenic

More information

Mechanotransduction in Ischemic Cardiac Tissue: A Mechanical Bidomain Approach under Plane Stress

Mechanotransduction in Ischemic Cardiac Tissue: A Mechanical Bidomain Approach under Plane Stress Mechanotransduction in Ischemic Cardiac Tissue: A Mechanical Bidomain Approach under Plane Stress Austin Fee* & Bradley J. Roth *Department of Physics, Oakland University, Rochester, Michigan https://doi.org/10.33697/ajur.2019.001

More information

Abstract. Keywords. Gelayol Nazari Golpayegani 1, Amir Homayoun Jafari 2,3*, Nader Jafarnia Dabanloo 1

Abstract. Keywords. Gelayol Nazari Golpayegani 1, Amir Homayoun Jafari 2,3*, Nader Jafarnia Dabanloo 1 J. Biomedical Science and Engineering, 2017, 10, 77-106 http://www.scirp.org/journal/jbise ISSN Online: 1937-688X ISSN Print: 1937-6871 Providing a Therapeutic Scheduling for HIV Infected Individuals with

More information

Research Article A Computational Model for Investigating Tumor Apoptosis Induced by Mesenchymal Stem Cell-Derived Secretome

Research Article A Computational Model for Investigating Tumor Apoptosis Induced by Mesenchymal Stem Cell-Derived Secretome Computational and Mathematical Methods in Medicine Volume 26, Article ID 4963, 7 pages http://dx.doi.org/55/26/4963 Research Article A Computational Model for Investigating Tumor Apoptosis Induced by Mesenchymal

More information

UWA Research Publication

UWA Research Publication UWA Research Publication Shrestha S. M. B. Joldes G. R. Wittek A. and Miller K. (2013) Cellular automata coupled with steady-state nutrient solution permit simulation of large-scale growth of tumours.

More information

Design and Simulation of Blocked Blood Vessel for Early Detection of Heart Diseases

Design and Simulation of Blocked Blood Vessel for Early Detection of Heart Diseases Proceedings of the 215 2nd International Symposium on Physics and Technology of Sensors, 8-1th March, 215, Pune, India Design and Simulation of Blocked Blood Vessel for Early Detection of Heart Diseases

More information

Research on Software Continuous Usage Based on Expectation-confirmation Theory

Research on Software Continuous Usage Based on Expectation-confirmation Theory Research on Software Continuous Usage Based on Expectation-confirmation Theory Daqing Zheng 1, Jincheng Wang 1, Jia Wang 2 (1. School of Information Management & Engineering, Shanghai University of Finance

More information

Towards whole-organ modelling of tumour growth

Towards whole-organ modelling of tumour growth Progress in Biophysics & Molecular Biology 85 (2004) 451 472 Towards whole-organ modelling of tumour growth T. Alarc!on a, *,1, H.M. Byrne b, P.K. Maini a a Centre for Mathematical Biology, Mathematical

More information

CD34 + VEGFR-3 + progenitor cells have a potential to differentiate towards lymphatic endothelial cells

CD34 + VEGFR-3 + progenitor cells have a potential to differentiate towards lymphatic endothelial cells CD34 + VEGFR-3 + progenitor cells have a potential to differentiate towards lymphatic endothelial cells Tan YZ et al. J Cell Mol Med. (2014 Mar;18(3):422-33) Denise Traxler-Weidenauer April 2014 Introduction

More information

Part I. Boolean modelling exercises

Part I. Boolean modelling exercises Part I. Boolean modelling exercises. Glucose repression of Icl in yeast In yeast Saccharomyces cerevisiae, expression of enzyme Icl (isocitrate lyase-, involved in the gluconeogenesis pathway) is important

More information

CA 2 : Cellular Automata Models and Self-Organized Chaos in Cancer Growth

CA 2 : Cellular Automata Models and Self-Organized Chaos in Cancer Growth CA 2 : Cellular Automata Models and Self-Organized Chaos in Cancer Growth ADAM V. ADAMOPOULOS Medical Physics Laboratory, Department of Medicine Democritus University of Thrace GR-681 00, Alexandroupolis

More information

Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle

Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle Feilim Mac Gabhann and Aleksander S. Popel Am J Physiol Heart Circ Physiol 292:459-474,

More information

Simulation of Influenza Epidemics with a Hybrid Model - Combining Cellular Automata and Agent Based Features

Simulation of Influenza Epidemics with a Hybrid Model - Combining Cellular Automata and Agent Based Features Simulation of Influenza Epidemics with a Hybrid Model - Combining Cellular Automata and Agent Based Features Štefan Emrich 1), Felix Breitenecker 1), Günther Zauner 2), Nikolas Popper 2), 1) Institute

More information

Study of Early Tumour Development and its Glycolytic Properties

Study of Early Tumour Development and its Glycolytic Properties Study of Early Tumour Development and its Glycolytic Properties Ariosto Siqueira Silva, Jose Andres Yunes Centro Infantil Boldrini Contacts: ariostosilva@i-genics.com,andres@boldrini.org.br It is believed

More information

SIBLINGs, cancer's multifunctional weapons

SIBLINGs, cancer's multifunctional weapons SIBLINGs, cancer's multifunctional weapons 6/18/08 Akeila Bellahcène and Vincent Castronovo of the Metastasis Research laboratory of the University of Liège are among the first researchers to have discovered

More information

Construction of Nephron by Fusion of Adult Glomeruli to Ureteric Buds with Type V Collagen. Yusuke Murasawa, Pi-chao Wang

Construction of Nephron by Fusion of Adult Glomeruli to Ureteric Buds with Type V Collagen. Yusuke Murasawa, Pi-chao Wang Construction of Nephron by Fusion of Adult Glomeruli to Ureteric Buds with Type V Collagen Yusuke Murasawa, Pi-chao Wang Abstract Although tissue engineering of artificial organs such as skin or cartilage

More information

An epidemic spreading model based on community structure in dual social networks

An epidemic spreading model based on community structure in dual social networks International Journal of Microbiology and Mycology IJMM pissn: 2309-4796 http://www.innspub.net Vol. 5, No. 3, p. 1-10, 2017 Open Access RESEARCH PAPER An epidemic spreading model based on community structure

More information

ISSUES ON COMPUTATIONAL MODELING FOR COMPUTATION-AIDED DIAGNOSIS 臨床診断支援ツールのための計算力学モデリング

ISSUES ON COMPUTATIONAL MODELING FOR COMPUTATION-AIDED DIAGNOSIS 臨床診断支援ツールのための計算力学モデリング ISSUES ON COMPUTATIONAL MODELING FOR COMPUTATION-AIDED DIAGNOSIS 臨床診断支援ツールのための計算力学モデリング Hao LIU Advanced Computer and Information Division, RIKEN 2-1, Hirosawa, Wako-shi, Saitama 351-0198 JAPAN e-mail:

More information

Neoplasia 18 lecture 8. Dr Heyam Awad MD, FRCPath

Neoplasia 18 lecture 8. Dr Heyam Awad MD, FRCPath Neoplasia 18 lecture 8 Dr Heyam Awad MD, FRCPath ILOS 1. understand the angiogenic switch in tumors and factors that stimulate and inhibit angiogenesis. 2. list the steps important for tumor metastasis

More information

Mathematical Modeling of Therapy-induced Cancer Drug Resistance: Connecting Cancer Mechanisms to Population Survival Rates

Mathematical Modeling of Therapy-induced Cancer Drug Resistance: Connecting Cancer Mechanisms to Population Survival Rates Supplementary Information Mathematical Modeling of herapy-induced Cancer Drug Resistance: Connecting Cancer Mechanisms to Population Survival Rates Xiaoqiang Sun 1,2 *, Jiguang Bao 3, Yongzhao Shao 4,5

More information

How Math (and Vaccines) Keep You Safe From the Flu

How Math (and Vaccines) Keep You Safe From the Flu How Math (and Vaccines) Keep You Safe From the Flu Simple math shows how widespread vaccination can disrupt the exponential spread of disease and prevent epidemics. By Patrick Honner BIG MOUTH for Quanta

More information

Emotional functioning in Systems Jim Edd Jones Lafayette, CO

Emotional functioning in Systems Jim Edd Jones Lafayette, CO Emotional functioning in Systems Jim Edd Jones Lafayette, CO jejonesphd@comcast.net My broad goal is to learn what agent-based modeling of emotional functioning in human systems might suggest to us beyond

More information

Cellular Automaton Model of a Tumor Tissue Consisting of Tumor Cells, Cytotoxic T Lymphocytes (CTLs), and Cytokine Produced by CTLs

Cellular Automaton Model of a Tumor Tissue Consisting of Tumor Cells, Cytotoxic T Lymphocytes (CTLs), and Cytokine Produced by CTLs Regular Paper Cellular Automaton Model of a Tumor Tissue Consisting of Tumor Cells, Cytotoxic T Lymphocytes (CTLs), and Cytokine Produced by CTLs Toshiaki Takayanagi,, Hidenori Kawamura and Azuma Ohuchi

More information

IEEE SIGNAL PROCESSING LETTERS, VOL. 13, NO. 3, MARCH A Self-Structured Adaptive Decision Feedback Equalizer

IEEE SIGNAL PROCESSING LETTERS, VOL. 13, NO. 3, MARCH A Self-Structured Adaptive Decision Feedback Equalizer SIGNAL PROCESSING LETTERS, VOL 13, NO 3, MARCH 2006 1 A Self-Structured Adaptive Decision Feedback Equalizer Yu Gong and Colin F N Cowan, Senior Member, Abstract In a decision feedback equalizer (DFE),

More information

IJREAS Volume 2, Issue 2 (February 2012) ISSN: LUNG CANCER DETECTION USING DIGITAL IMAGE PROCESSING ABSTRACT

IJREAS Volume 2, Issue 2 (February 2012) ISSN: LUNG CANCER DETECTION USING DIGITAL IMAGE PROCESSING ABSTRACT LUNG CANCER DETECTION USING DIGITAL IMAGE PROCESSING Anita Chaudhary* Sonit Sukhraj Singh* ABSTRACT In recent years the image processing mechanisms are used widely in several medical areas for improving

More information

A MODEL OF GAP JUNCTION CONDUCTANCE AND VENTRICULAR TACHYARRHYTHMIA

A MODEL OF GAP JUNCTION CONDUCTANCE AND VENTRICULAR TACHYARRHYTHMIA A MODEL OF GAP JUNCTION CONDUCTANCE AND VENTRICULAR TACHYARRHYTHMIA X. D. Wu, Y. L. Shen, J. L. Bao, C. M. Cao, W. H. Xu, Q. Xia Department of Physiology, Zhejiang University School of Medicine, Hangzhou,

More information

A Study on Reducing Gear Tooth Profile Error by Finish Roll Forming

A Study on Reducing Gear Tooth Profile Error by Finish Roll Forming A Study on Reducing Gear Tooth Profile Error by Finish Roll Forming Seizo Uematsu, Donald R. Houser, Sung-Ki Lyu, Long Lu, Ju-Suck Lim Measuring position on line of action (mm) Before rolling After rolling

More information

NAILFOLD CAPILLAROSCOPY USING USB DIGITAL MICROSCOPE IN THE ASSESSMENT OF MICROCIRCULATION IN DIABETES MELLITUS

NAILFOLD CAPILLAROSCOPY USING USB DIGITAL MICROSCOPE IN THE ASSESSMENT OF MICROCIRCULATION IN DIABETES MELLITUS NAILFOLD CAPILLAROSCOPY USING USB DIGITAL MICROSCOPE IN THE ASSESSMENT OF MICROCIRCULATION IN DIABETES MELLITUS PROJECT REFERENCE NO. : 37S0841 COLLEGE BRANCH GUIDE : DR.AMBEDKAR INSTITUTE OF TECHNOLOGY,

More information

Learning Classifier Systems (LCS/XCSF)

Learning Classifier Systems (LCS/XCSF) Context-Dependent Predictions and Cognitive Arm Control with XCSF Learning Classifier Systems (LCS/XCSF) Laurentius Florentin Gruber Seminar aus Künstlicher Intelligenz WS 2015/16 Professor Johannes Fürnkranz

More information

A SINGLE-CELL APPROACH IN MODELING THE DYNAMICS OF TUMOR MICROREGIONS. Katarzyna A. Rejniak

A SINGLE-CELL APPROACH IN MODELING THE DYNAMICS OF TUMOR MICROREGIONS. Katarzyna A. Rejniak MATHEMATICAL BIOSCIENCES http://www.mbejournal.org/ AND ENGINEERING Volume 2, Number 3, August 2005 pp. 643 655 A SINGLE-CELL APPROACH IN MODELING THE DYNAMICS OF TUMOR MICROREGIONS Katarzyna A. Rejniak

More information

arxiv: v1 [q-bio.to] 31 Mar 2017

arxiv: v1 [q-bio.to] 31 Mar 2017 Amoeboid-mesenchymal migration plasticity promotes invasion only in complex heterogeneous microenvironments Katrin Talkenberger 1,*, Elisabetta Ada Cavalcanti-Adam 2,3, Andreas Deutsch 1, and Anja Voss-Böhme

More information