Update on Swine Influenza Virus Surveillance in Vietnam
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1 Update on Swine Influenza Virus Surveillance in Vietnam OFFLU SIV Group technical meeting, 3 4 Dec 2015 OIE Headquarters, Paris Tung Nguyen, DAH-Vietnam
2 Swine Influenza surveillance activities in Vietnam Surveillance implemented by Department of Animal Health (DAH) NIAH(Japan) CDC Atlanta FAO: EPT+ (now EPT2) Surveillance conducted by National Institute of Veterinary Research (NIVR): with CIRAD
3 SIV surveillance DAH-NIAH ( ) Hanoi Bac Ninh Nam Dinh Binh Duong Ho Chi Minh Long An Dong Nai BR-VT Tien Giang Soc Trang Provinces under survey 7034 nasal swabs collected.
4 SIV surveillance DAH-NIAH (2015) Bac Ninh 2015 February July December Ho Chi Minh 1680 nasal swabs were collected from clinically healthy pigs in 28 pig farms Don Nai BR-VT Tien Giang Provinces under survey
5 Number of isolates and the genetic analysis of HA genes ISV in 6-year-surveillance 275/8714 Pdm(H1N1)09v 47 (3) * H1N2 H3N2 75 (19) 153 (39) 6 15 (2) 54 (17) 65 (11) 88 (28) Pdm09v H1 Pre-pandemic human-like H1 Seasonal human-like H3 Triple reassortant H3 Classical swine H1 * The number of isolates in 2015 are shown in parentheses.
6 Genotype i Subtype H1N1 Gene constellations of SIV Gene origin from: HA NA PB2 PB1 PA NP M NS Province Nam Dinh, Binh Duong, Ba Ria Vung Tau, Tien Giang, Bac Ninh Isolation year 2010, 2011, 2012, 2013, 2014 Binh Duong, ii Seasonal 2010, 2014, 2015 Dong Nai Human Iii Bac Ninh 2012 Iv Tien Giang 2011 V Tien Giang 2012 Vi Dong Nai 2011 H1N2 Vii Tien Giang 2012 viii Bac Ninh 2013 ix Tien Giang 2014 x Tien Giang, Ba Ria Vung Tau 2015 xi Dong Nai 2015 xii TR Pdm09 TR Binh Duong 2010 xiii Tien Giang, Dong nai 2011, 2015 Seasonal 2012, 2013, 2014, xiv H3N2 Dong Nai Human 2015 xv Bac Ninh 2012 xvi Bac Ninh 2013, 2014, 2015
7 EPT+ phase 1 ( ) swab and sera collected from88 farm (32 breeding và 56 fattening) in 12 provinces SIV positive was 6.94% in total SIV positive farm: 10.28% for breeding and 4.79% for fattening 75% provinces selected was positive SIV Ab positive was 26.76% in total 100% provinces selected was positive 6 viruses isolated (H1N2 and H3N2)
8 0.02 Swine/Huma n Europe Swine/Human North America Swine/Human Vietnam/NA/HK Phylogenetic relationship of Influenza A virus subtype H3 isolated from mammalians (Based on HA1 sequences) 20/01/2013 Swine Asia Swine America Swine Europe Human A/swine/Pennsylvania/ /2010(H3N2) A/swine/North Carolina/A /2011(H3N2) A/swine/Minnesota/ /2008 (H3) A/turkey/Illinois/2004(H3N2) A/turkey/North Carolina/353568/2005(H3N2) A/swine/Minnesota/578/2007(H3N2) A/swine/Iowa/01700/2007(H3N2) A/swine/Quebec/4001/2005(H3N2) A/swine/Minnesota/1300/2007(H3N2) A/mink/Nova Scotia/ /2007(H3N2) A/Ontario/1252/2007(H3N2) A/swine/Iowa/A /2010(H3N2) A/swine/Illinois/A /2010(H3N2) A/swine/Minnesota/A /2010(H3N2) VN13(01/08) A/swine/VN/BacNinh/EPT-BN4-47/2013 VN13(01/08) A/swine/VN/BacNinh/EPT-BN5-45/2013 A/swine/Minnesota/A /2010(H3N2) A/swine/Ohio/10SW122/2010(H3N2) A/swine/Michigan/A /2012(H3N2) A/Indiana/10/2011(H3N2) A/swine/Illinois/A /2012(H3N2) A/swine/North Carolina/38715/2005(H3N2) A/turkey/Minnesota/764-2/03(H3N2) A/swine/Minnesota/00395/2004(H3N1) A/swine/Korea/JNS06/2004(H3N2) A/swine/North Carolina/2003(H3N2) A/swine/Iowa/H02AS8/2002(H3N2) A/swine/Wisconsin/H02AS8/2002(H3N2) A/Netherlands/5/1998(H3N2) A/New York/599/1996(H3N2) A/Malaysia/11473/1996(H3N2) A/Oslo/21/1997(H3N2) A/New York/537/1998(H3N2) A/Johannesburg/10/1997(H3N2) A/Hong Kong/CUHK12563/1997(H3N2) A/Singapore/1/1996(H3N2) A/Geneva/3958/1996(H3N2) A/Hong Kong/55/1995(H3N2) A/swine/Ontario/00130/97(H3N2) A/Nanchang/933/1995(H3N2) A/Brisbane/8/1996(H3N2) A/Wuhan/359/1995(H3N2) A/Paris/908/97(H3N2) A/New York/569/1997(H3N2) A/Siena/1/1997(H3N2) A/Hong Kong/357/1996(H3N2) A/swine/Shandong/106/2007(H3N2) A/England/321/1977(H3N2) A/Texas/1/1977(H3N2) A/Memphis/2/77(H3N2) A/Swine/Wisconsin/194/80(H3N2) A/swine/Italy/729/1988(H3N2) A/swine/Brabant/1984(H3N2) A/swine/Italy/635/87(H3N2) A/swine/Ukkel/1/1984(H3N2) A/swine/Italy/1380-2/1995(H3N2) A/Hong Kong/1774/99(H3N2) A/swine/Hong Kong/1197/02(H3N2) A/Swine/Netherlands/784/91 A/swine/Germany/Vi3161/95(H3N2) A/Swine/Breugel/97 A/swine/Italy/1510/98(H3N2) A/Swine/Netherlands/849/93 A/swine/Belgium/87/95(H3N2) A/wild boar/germany/ws169/2006(h3n2) A/swine/Germany/S043/2002(H3N2) A/swine/Spain/39139/2002(H3N2) A/swine/Flanders/1/1998(H3N2) A/swine/Italy/170/2001(H3N2) A/swine/Italy/7680/2001(H3N2) A/swine/Italy/66945/2006(H3N1) A/swine/Italy/ /2006(H3N2) A/swine/Bissendorf/IDT1864/2003(H3N2) A/swine/Spain/42386/2002(H3N2) A/swine/Gent/96/2007(H3N2) A/swine/Spain/54008/2004(H3N2) A/swine/Damme/IDT5673/2006(H3N2) A/swine/Spain/SF32071/2007(H3N2) A/swine/Hungary/13509/2007(H3N2) A/swine/Gent/172/2008(H3N2) A/Victoria/3/1975(H3N2) A/Hong Kong/43/75(H3N2) A/Beijing/39/75(H3N2) A/Rotterdam/5828/1977(H3N2) A/Memphis/108/76(H3N2) A/swine/Hunan/3/2008(H3N2) A/swine/Guangdong/01/1998(H3N2) A/swine/Fujian/F2/2007(H3N2) A/swine/Colorado/1/1977(H3N2) A/swine/Guangdong/107/2002(H3N2) A/swine/Guangdong/211/2006(H3N2) A/Bilthoven/5931/74(H3N2) A/Bilthoven/4273/1975(H3N2) A/Port Chalmers/1/1973(H3N2) A/Hong Kong/49/74(H3N2) A/Guandong/243/72(H3N2) A/Bilthoven/23290/1972(H3N2) A/Memphis/109/72(H3N2) A/England/42/1972(H3N2) VN10 A/swine/Binh Duong/03 06/2010(H3N2) VN10 A/swine/Binh Duong/03 08/2010(H3N2) A/swine/Hong Kong/2503/2011(H3N2) A/swine/Guangxi/NS2783/2010(H3N2) A/Queensland/43/2004(H3N2) A/California/07/2004(H3N2) A/Canterbury/200/2004(H3N2) A/Hong Kong/CUHK7047/2005(H3N2) A/New York/359/2005(H3N2) A/New York/918/2005(H3N2) A/New York/55/2004(H3N2) A/Denmark/264/2005(H3N2) A/South Carolina/NHRC0002/2005(H3N2) SIV isolated in North Vietnam in EPT on 08 Jan 2013 SIV isolated in South Vietnam in 2010
9 EPT+ phase 2 ( ) 6760 swabs (135 pools) and 2534 sera collected from 169 farms/house hold in 19 provinces 48/1.352 pools were positive (3,55%). 14/169 farm positive for SIV (8%) 1.139/2.534 sera were Ab positive (45%) 130/169 farms were positive either swab or sera (77%)
10 DAH-CDC Cross--sectional study 4 rounds of sampling in 9 study provinces (9/2013, 12/2013, 3/2014 and 6/2014) including 7,650 swab and 7,650 blood (189 swine slaughterhouses) A total of 1,169 pool samples were tested to detect type A virus. Of these tested pools, 44 (3.76%) pools were positive. Subsequently tested individual swabs showed 34,04 % positive
11 DAH-CDC Longitudinal study Three sampling rounds in February, March and April A total of 8,100 swab and and 8,100 blood samples were taken from 8,100 animals (4,050 pigs and 4,050 poultry) at 270 households in 9 study 1,040 pooled swabs tested, 6 pools (0.57%) positive (3 pigs and 3 poultry)
12 NIVR-CIRAD SIV surveillance H1N H1N2 H3N1 Not subtyped Sum H1N1 H1N2 H3N1 H3N2 Not subtyped Sum
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