Received 3 November 2010/Returned for modification 26 December 2010/Accepted 1 February 2011

Size: px
Start display at page:

Download "Received 3 November 2010/Returned for modification 26 December 2010/Accepted 1 February 2011"

Transcription

1 JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 2011, p Vol. 49, No /11/$12.00 doi: /jcm Copyright 2011, American Society for Microbiology. All Rights Reserved. Genotypic and Phenotypic Characterization of Methicillin-Susceptible Staphylococcus aureus Isolates Misidentified as Methicillin-Resistant Staphylococcus aureus by the BD GeneOhm MRSA Assay Paul D. Stamper, 1 * Lisa Louie, 2 Henry Wong, 2 Andrew E. Simor, 2 Jason E. Farley, 3,4 and Karen C. Carroll 1,3,4 Division of Medical Microbiology, Department of Pathology, The Johns Hopkins University School of Medicine, Baltimore, Maryland 1 ; Department of Microbiology, Sunnybrook Health Sciences Centre, Toronto, Ontario, Canada 2 ; Division of Infectious Disease, The Johns Hopkins University School of Medicine, Baltimore, Maryland 3 ; and The Johns Hopkins University School of Nursing, Baltimore, Maryland 4 Received 3 November 2010/Returned for modification 26 December 2010/Accepted 1 February 2011 Twenty-three nasal swab samples that tested positive for methicillin-resistant Staphylococcus aureus (MRSA) on initial testing by the BD GeneOhm MRSA assay (BD-MRSA ; BD GeneOhm, San Diego, CA) were culture positive only for methicillin-susceptible S. aureus (MSSA) from an enrichment broth. The 23 recovered isolates were confirmed as MSSA by a variety of phenotypic methods, including the BD Phoenix automated microbiology system (BD Diagnostics, Sparks, MD), oxacillin screening agar (BD Diagnostics), BBL CHROMagar MRSA (BD Diagnostics), and a PBP2 assay (Denka Seiken Co., Tokyo, Japan); susceptibilities were determined by using Mueller-Hinton agar with oxacillin. All were positive by nuc, specific for S. aureus, but negative for meca with one exception. Isolates were characterized by using multiplex methodology to determine structural types and variants (SCCmec typing); additional s were performed for the detection of the ccr and mec complexes, the junkyard regions as well as the Panton-Valentine leukocidin. Pulsed-field gel electrophoresis was used to determine clonality. One phenotypic MSSA isolate contained an intact SCCmec. Twelve MSSA isolates tested positive for MRSA by the BD-MRSA because of amplification of the mec priming site flanking the SCC insertion point, although these isolates lacked meca. The 10 remaining isolates were not MRSA and tested as MSSA by phenotypic and genotypic assays. In our patient population, diagnostic and surveillance testing and subsequent infection control practices may be impacted by the frequency of these excision events when using the BD-MRSA for MRSA detection. Downloaded from The development of real-time assays that differentiate methicillin-resistant Staphylococcus aureus (MRSA) from other staphylococci by linking a region of the meca complex to an area specific on the S. aureus chromosome (orfx) (9) enabled molecular MRSA surveillance and diagnosis in a variety of healthcare settings. The utility of these tests, such as the BD GeneOhm MRSA assay (BD-MRSA ; BD GeneOhm, San Diego, CA), has been described in numerous publications (2, 3, 6, 17, 25). However, performance issues related to falsepositive results have been reported by some investigators (2, 3, 21). The staphylococcal cassette chromosome mec (SCCmec)isa structurally diverse mobile genetic element which varies by structural organization and genetic content (10). Typically, broad-spectrum beta-lactam resistance of S. aureus is carried on the meca gene encoded within the SCCmec (10). The BD- MRSA uses five forward primers that target a region of the SCCmec at the extreme right end near the insertion site and one reverse primer targeting the downstream orfx gene (9) to differentiate MRSA from methicillin-susceptible S. aureus * Corresponding author. Mailing address: Johns Hopkins Hospital Microbiology Laboratory, Meyer B1-193, 600 N. Wolfe St., Baltimore, MD Phone: (410) Fax: (410) pstamper@jhmi.edu. Published ahead of print on 9 February (MSSA) and other bacteria. The amplified products vary in size, 176 to 278 bp, depending on the SCCmec right extremity sequence amplified and are detected using fluorescently labeled molecular beacon probes (9). Donnio et al. described a number of MSSA isolates (n 9) from French hospitals containing partial SCCmec elements without meca (4) and predicted that assays based on the amplification by primers from the SCCmec-orfX region (i.e., BD-MRSA ) would be falsely determined as positive for MRSA. The loss of the methicillin-resistant phenotype due to the partial excision of the SCCmec has been suggested as the mechanism behind the high prevalence of false-positive BD- MRSA results observed in some populations (2, 6, 17, 25). In the original description of what is now the BD GeneOhm MRSA assay, Huletsky et al. found that 4.6% of the isolates tested from their worldwide collection displayed this phenomenon (9). This study elucidated the phenomenon of false-positive BD-MRSA results in clinical samples tested for MRSA surveillance. S. aureus isolates from lysates which initially tested false positive from which only phenotypic MSSA was recovered were examined for the loss of functional meca and SCCmec. The phenotype and genotype of the S. aureus isolates were confirmed with susceptibility to oxacillin, the presence or absence of the ccrab locus, and the arrangement of the SCCmec. on July 7, 2018 by guest 1240

2 VOL. 49, 2011 CHARACTERIZATION OF BD-MRSA FALSE POSITIVES 1241 MATERIALS AND METHODS S. aureus isolates. During an epidemiological study performed on adults that compared chromogenic media and the BD-MRSA for detection of MRSA from anterior nasal specimens (5), 23 MSSA isolates were recovered that were initially identified as MRSA positive by the BD-MRSA in which no MRSA was recovered (6). Isolates (n 23) were recovered directly from subculture of the enrichment Trypticase soy broth with 6.5% NaCl. S. aureus isolates were identified by use of Gram staining, slide coagulation, and additional biochemicals as required. In addition, the isolates were sent to the research laboratories at BD GeneOhm, Quebec City, Quebec, Canada, and Sunnybrook Health Sciences Centre, Toronto, Ontario, Canada, for separate independent analyses. Phenotypic MSSA confirmation. The BD Phoenix automated microbiology system (Phoenix; BD Diagnostics, Sparks, MD) was used to confirm initial identification and susceptibility to oxacillin. All 23 isolates were confirmed as methicillin-susceptible S. aureus, and the results are summarized in Table 1. Susceptibility testing was performed, and MICs to oxacillin ranged from 0.25 to 1 g/ml. Isolates were subcultured to oxacillin screening agar (OSA; BD Diagnostics, Sparks, MD) and to BBL CHROMagar MRSA (CHROM-MRSA; BD Diagnostics) for growth. At BD GeneOhm, the isolates were independently analyzed for the presence of the penicillin-binding protein 2 (2a) with the PBP2 assay (Denka Seiken Co., Tokyo, Japan), and susceptibility to oxacillin was confirmed by using oxacillin screening agar (BD Diagnostics). Tests were performed according to the manufacturer s instructions. All 23 isolates failed to grow on CHROM-MRSA and OSA at The Johns Hopkins Hospital (JHH) laboratory. In the BD GeneOhm laboratory, no isolates grew on the oxacillin screening agar plates, and all tested negative with the PBP2 assay. Genotypic confirmation, strain typing, and PVL testing. Isolates were tested by using the BD-MRSA assay at JHH, Baltimore, MD, and at BD GeneOhm using the BD-MRSA, and by using the BD GeneOhm StaphSR assay (BD-SR ) (Table 1). At the Sunnybrook Health Sciences Centre, isolates were confirmed as S. aureus (n 23) using a species-specific assay to detect the presence of the nuclease gene, nuc (13), and only one isolate contained an amplifiable meca gene (13). After testing with the original Huletsky multiplex (9), the structural types and variants of the mec element were determined by using the multiplex methodology described by Oliveira et al. (18). Detection of the J1 region, cassette recombinase (ccr), and methicillin resistance (mec) gene complexes was performed using assays described by Kondo et al. (11). Pulsed-field gel electrophoresis (PFGE) was performed, and profiles were manually examined (16). Images were digitized into BioNumerics version 5.10, and a cluster analysis using the Dice coefficient and UPGMA (unweighted pair-group method with arithmetic averages) was generated using the USA PFGE clonal designations. The presence of the Panton-Valentine leukocidin (PVL) gene, encoding the cytotoxin causing leukocyte destruction and tissue necrosis, was detected by (12). RESULTS Isolates. The results of the testing at BD GeneOhm in Quebec using the BD-MRSA and StaphSR assay, as well as the Huletsky multiplex, are presented in Table 1. Testing of all isolates agreed between JHH and Sunnybrook laboratories. Two isolates tested negative using the BD-MRSA assay at JHH and Sunnybrook but were positive by BD-MRSA and positive for the MRSA portion of the StaphSR when tested at BD GeneOhm. Positivity was attributed to nonspecific amplification or errant amplicons. One isolate, USA300 as determined by PFGE (specimen 1393), was identified by using phenotypic tests (PBP2, CHROM-MRSA, the Phoenix instrument, and OSA) as an MSSA, but genotypic testing was consistent with MRSA revealing that the isolate contained a SCCmec IVa cassette with an intact meca (11). The isolate was PVL positive. BD-MRSA and the StaphSR assay correctly detected the presence of the SCCmec in specimen 1393; however, even though the isolate contained the meca gene, the gene product PBP2 was not detectable. The methicillin-resistant gene machinery was present, but the product was not expressed. c BD, BD-GeneOhm. Ox MH, oxacillin Mueller-Hinton. a JHH, Johns Hopkins Hospital. OSA, Oxacillin Screening Agar (BD Diagnostics Sparks, MD); CHROM, BBL CHROMagar MRSA (BD Diagnostics, Sparks, MD); OXA MIC, oxacillin MIC; NG, no growth;, positive;, negative. Oxacillin MIC 1 for isolates 1033, 1276, 1432, 1487, and 1545; oxacillin MIC 0.5 for isolates 1028, 1052, 1058, 1075, 1096, and b SHSC, Sunnybrook Health Sciences Centre. MPX, multiplex; Nd, not done. 1 (1185) NG/NG 0.5 II USA100-like MRSA /NG False positive 1 (1374) NG/NG 0.5 USA300-like MRSA /NG False positive; nonspecific amplification 2 (1135, 1268) NG/NG 0.5 USA600-like MSSA /NG 1 (1510) NG/NG 0.5 USA400-like MSSA /NG 3 (1372, 1377, 1491) NG/NG 0.5 Other MSSA /NG 1 (1422) NG/NG 0.5 EMRSA15-like MSSA /NG 1 (1353) NG/NG 0.25 EMRSA16-like MSSA /NG False positive; nonspecific amplification 1 (1016) NG/NG 0.25 EMRSA16-like MSSA /NG 11 (1028, 1033, 1052, 1058, 1075, 1096, 1276, 1432, 1487, 1545, 1571) NG/NG USA400-like MRSA /NG False positive 1 (1393) NG/NG 0.5 IVa Nd USA300 MRSA /NG True positive; gene not expressed No. of isolates (isolate no.) OSA/CHROM JHH test result a SHSC test result b BD test result c Comment OXA MIC ( g/ml) MRSA SCCmec rightjunction ccr complex meca PVL Huletsky complex MPX PFGE MRSA PBP2 /Ox StaphSR MH TABLE 1. Review of test results for S. aureus isolates examined at three separate laboratories

3 1242 STAMPER ET AL. J. CLIN. MICROBIOL. and 1268 [USA600-like]) were negative for all SCCmec loci and were negative with the Huletsky multiplex. All were BD-MRSA negative and negative for MSSA by StaphSR. All were meca negative with the specific for meca, but one isolate 1353 did test positive as MRSA using the BD- MRSA assay at BD GeneOhm in Quebec City. These strains have recognized genetic backgrounds of known MRSA lineages by PFGE except for isolates 1372, 1377, and Elements of the SCCmec were not detected at Sunnybrook Health Sciences Center, which confirmed the negative result with the BD-MRSA at the JHH. A dendrogram with the cluster analysis of all 23 isolates is shown in Fig. 2. DISCUSSION FIG. 1. PFGE profiles of MSSA isolates resembling USA400. Lane 1, USA400; lanes 2 to 13, MSSA isolates resembling USA400, falsely positive for MRSA by MRSA-. The arrow indicates a DNA fragment harboring the meca gene (based on Southern hybridization). Eleven isolates (1028, 1033, 1052, 1058, 1075, 1096, 1276, 1432, 1487, 1545, and 1571; Table 1) tested virtually identical except for the oxacillin MIC: for five of the isolates, the oxacillin MICs were 1 g/ml, and for 6 isolates the MICs were 0.5 g/ml. By PFGE, the 11 isolates appeared to resemble USA400 (17). The Huletsky multiplex was positive as determined using the mecii574 forward primer with the Xsau325 reverse primer in orfx. Although the mecii574 primer targets SCCmec I, II, and IV cassettes, others have elucidated that these strains most likely carry a type IVa cassette prior to excision of meca (15). The 11 isolates phenotypically tested as MSSA, lacked meca, and were considered false positive by the BD-MRSA and StaphSR assays. Figure 1 shows the PFGE profiles of the MSSA USA400-like isolates compared to MRSA USA400. The S. aureus isolate (i.e., isolate 1185) was identified as MRSA by BD-MRSA, StaphSR, and Hultesky even though the meca from the cassette was missing. The isolate appears to have remnants of a type II cassette by SCCmec multiplex and was positive only for loci G, D, and B, which targeted the J region (left side). (Exact deletion junction would require further sequencing.) As estimated by PFGE, remnants of the SCCmec II cassette remained after the 25-kb deletion. This false-positive isolate resembles USA100, and this observation emphasizes that the false-positive phenomenon is not restricted to strains resembling the USA400 clone. One isolate, 1374, was PVL positive and was identified by all phenotypic tests as MSSA but had a USA300-like PFGE profile. The strain most likely had a SCCmec type IVa cassette, but it appears that the entire cassette was excised. The Huletsky multiplex was negative, and the isolate was negative by the BD-MRSA at JHH so the isolate should not have tested positive by the BD-MRSA or StaphSR, as tested by BD GeneOhm. This was a false positive from nonspecific amplification or perhaps contamination with stray amplicon. Nine isolates resembling several MRSA pulsed-field clones (1422 [PFGE EMRSA15-like]; 1016 and 1353 [EMRSA16- like]; 1372, 1377, and 1491 [other]; 1510 [USA400-like[; 1135 The sensitivity and specificity of the BD-MRSA in our patient population were 89.0 and 91.7%, respectively, when CHROM MRSA and an enrichment broth were used to recover all S. aureus (6). The extremely low-positive predictive value (PPV) of the BD-MRSA, 65.9%, was of concern and prompted this investigation. During the evaluation of the BD-MRSA compared to CHROMagar MRSA (6), we initially assumed that the primary sample contained nonviable MRSA, that heteroresistant MRSA was outcompeted by MSSA, or that nonspecific amplification had occurred. Similar to other findings (2, 6, 17, 19, 21, 25) from varied geographical locations and diverse populations, our data demonstrate that meca dropouts exist with some frequency. We do not believe that the dropout was related to testing or storage conditions since these observations were apparent upon initial testing. According to the study by Veguilla et al. (23), meca appears to be quite stable with prolonged preservation and multiple freeze-thaws over at least a 2-year period of time. The isolates in our study were of low passage and were tested within a relatively short period of time after they were recovered. Recently, Wong et al. (24) investigated false-positive results from a single-locus assay, the BD GeneOhm MRSA assay (BD-MRSA ), targeting the SCCmec/orfX junction and found that isolates of MSSA resembling USA400 and/or MSSA476 may harbor an additional copy of the dcs locus, thereby resulting in a falsely positive signal in the absence of an intact SCCmec element. This may be the case in our collection of isolates, although further sequencing of the chromosomal regions flanking the missing SCC elements would need to be performed. In addition, Wong et al. also described USA100- like MSSA isolates that had a partial excision that excised meca, leaving remnants of a SCCmec II cassette (24), again similar to one of the isolates, isolate 1185, tested in our collection. The results demonstrate that in our population, these problematic MSSA strains appear to resemble certain community-acquired-mrsa clones such as USA400, but the problem is not limited to only USA400 strain types. Our testing supports the suggestion of others (2, 4, 9) that the retained segments of the right extremity-junction sequence of the SCCmec by S. aureus strains missing the meca gene are amplified. Of the 23 of 42 (55%) initial false-positive BD- MRSA specimen lysates that contained MSSA, 12 of 42 (29%) contained phenotypic MSSA but genotypic MRSA. Only one isolate actually contained meca. The incomplete or partial SCCmec gene may alter the diagnostic reliability of

4 VOL. 49, 2011 CHARACTERIZATION OF BD-MRSA FALSE POSITIVES 1243 FIG. 2. Cluster analysis of isolates (n 23). The D locus of the SCCmec was estimated based on the location of the meca band from previous work (24). molecular assays based on this target (4, 9), and we believe that the problem is reflected in our reduced specificity (91.7%) (6) and the isolate test results in the present study. In addition, of the 19 -positive, culture-negative samples, 9 lysates were again positive on repeat testing despite the negative enrichment broth results. Several possible scenarios may apply to this situation. One possibility is that these specimens contained nonviable MRSA or nonviable S. aureus that contain a residual fragment containing the target SCCmec region detected with the assay. Alternatively, a Staphylococcus species not S. aureus that contained a homologous target of the SCCmec region (1, 8, 14) could have been detected by the BD-MRSA assay. Unfortunately, we did not examine the role of CoNS or attempt to quantify nonviable S. aureus DNA within the false-positive initial lysates in which no S. aureus was recovered. Huletsky et al. (9) did not see this phenomenon among 286 CoNS isolates; however, we did not investigate the CoNS to rule out this possibility. Gröbner et al. (7) using the StaphSR assay, which relies on the same primers for detection of MRSA as the BD-MRSA test, found three MSSA isolates that tested false positive for MRSA. The prevalence of this occurrence in their isolates that can be attributed to the meca dropouts is similar to the prevalence of false-positive MRSA reported initially by Huletsky et al. (9). Although Snyder et al. (20) did not see this phenomenon during testing (59 S. aureus isolates), reexamination of our false-positive blood culture isolates (n 2) (22) leads us to conclude that this can occur not only in nasal surveillance cultures but also in blood cultures. Our two falsepositive MRSA isolates (22) from blood were meca dropouts determined to be false positive by the Huletsky. One blood culture isolate resembled PFGE USA400 but was meca negative, whereas the other blood culture isolate was a meca-negative strain resembling PFGE USA100 with a SCCmec II deletion ( 25 kb). The presence of an amplicon using the Huletsky et al., the BD-MRSA, and the StaphSR assay with the absence of amplification of the ccr and meca complexes implies that the SCCmec element is present but that there was a deletion of the meca gene complex. Similar to the BD-MRSA, the BD StaphSR, relying on very similar primers and the same methodology, will also have false positives due to this phenomenon. When implementing a MRSA screening assay as a surveillance tool in hospitals, long-term care facilities and other institutionalized settings, the strengths and limitations of the diagnostic test must be understood to integrate efficiently with infection control practices. As others have noted (4, 19), positive test results with the MRSA assay should be verified by

5 1244 STAMPER ET AL. J. CLIN. MICROBIOL. concomitant culture for infection control practices or epidemiological studies. The sensitivity and specificity of the BD- MRSA in endemic settings has been adequate but, in our high prevalence population, the large number of false positives due to a remnant portion of the SCCmec necessitates that a positive result by the BD-MRSA should be confirmed by culture. ACKNOWLEDGMENTS Luc Parise performed independent confirmation of the MSSA isolates with PBP2 and Staphaurex at BD-GeneOhm, Quebec City, Quebec, Canada. This study was performed with the assistance of Mian Cai, Tracy Ross, and Sharon Speser at the Johns Hopkins Hospital. This research was supported by a National Research Service Award funded by the National Institute of Nursing Research, by National Institutes of Health (NIH) grant 1 F31 NR , and by an NIHfunded T-32 Institutional Training grant in Health Disparities. The laboratory work was supported in part by a grant from BD Diagnostics (Sparks, MD) and BD GeneOhm (San Diego, CA). REFERENCES 1. Barbier, F., et al Methicillin-resistant coagulase-negative staphylococci in the community: high homology of SCCmec IVa between Staphylococcus epidermidis and major clones of methicillin-resistant Staphylococcus aureus. J. Infect. Dis. 202: Desjardins, M., C. Guibord, B. Lalonde, B. Toye, and K. Ramotar Evaluation of the IDI-MRSA assay for detection of methicillin-resistant Staphylococcus aureus from nasal and rectal specimens pooled in a selective broth. J. Clin. Microbiol. 44: Donnio, P. Y., et al Molecular and epidemiological evidence for spread of multiresistant methicillin-susceptible Staphylococcus aureus strains in hospitals. Antimicrob. Agents Chemother. 51: Donnio, P. Y., et al Partial excision of the chromosomal cassette containing the methicillin resistance determinant results in methicillin-susceptible Staphylococcus aureus. J. Clin. Microbiol. 43: Farley, J. E., et al Prevalence, risk factors, and molecular epidemiology of methicillin-resistant Staphylococcus aureus among newly arrested men in Baltimore, Maryland. Am. J. Infect. Control 36: Farley, J. E., et al Comparison of the BD GeneOhm methicillinresistant Staphylococcus aureus (MRSA) assay to culture by use of BBL CHROMagar MRSA for detection of MRSA in nasal surveillance cultures from an at-risk community population. J. Clin. Microbiol. 46: Gröbner, S., M. Dion, M. Plante, and V. A. Kempf Evaluation of the BD GeneOhm StaphSR assay for detection of methicillin-resistant and methicillin-susceptible Staphylococcus aureus isolates from spiked positive blood culture bottles. J. Clin. Microbiol. 47: Hanssen, A. M., G. Kjeldsen, and J. U. Sollid Local variants of staphylococcal cassette chromosome mec in sporadic methicillin-resistant Staphylococcus aureus and methicillin-resistant coagulase-negative Staphylococci: evidence of horizontal gene transfer? Antimicrob. Agents Chemother. 48: Huletsky, A., et al New real-time assay for rapid detection of methicillin-resistant Staphylococcus aureus directly from specimens containing a mixture of staphylococci. J. Clin. Microbiol. 42: IWG-SCC Classification of staphylococcal cassette chromosome mec (SCCmec): guidelines for reporting novel SCCmec elements. Antimicrob. Agents Chemother. 53: Kondo, Y., et al Combination of multiplex s for staphylococcal cassette chromosome mec type assignment: rapid identification system for mec, ccr, and major differences in junkyard regions. Antimicrob. Agents Chemother. 51: Lina, G., et al Involvement of Panton-Valentine leukocidin-producing Staphylococcus aureus in primary skin infections and pneumonia. Clin. Infect. Dis. 29: Louie, L., et al Rapid detection of methicillin-resistant staphylococci from blood culture bottles by using a multiplex assay. J. Clin. Microbiol. 40: Malhotra-Kumar, S., et al Evaluation of molecular assays for rapid detection of methicillin-resistant Staphylococcus aureus. J. Clin. Microbiol. [Epub ahead of print.] 15. McDougal, L. K., et al Pulsed-field gel electrophoresis typing of oxacillin-resistant Staphylococcus aureus isolates from the United States: establishing a national database. J. Clin. Microbiol. 41: Mulvey, M. R., et al Development of a Canadian standardized protocol for subtyping methicillin-resistant Staphylococcus aureus using pulsedfield gel electrophoresis. J. Clin. Microbiol. 39: Oberdorfer, K., S. Pohl, M. Frey, K. Heeg, and C. Wendt Evaluation of a single-locus real-time polymerase chain reaction as a screening test for specific detection of methicillin-resistant Staphylococcus aureus in ICU patients. Eur. J. Clin. Microbiol. Infect. Dis. 25: Oliveira, D. C., and H. de Lencastre Multiplex strategy for rapid identification of structural types and variants of the mec element in methicillin-resistant Staphylococcus aureus. Antimicrob. Agents Chemother. 46: Rossney, A. S., et al Evaluation of the IDI-MRSA assay on the SmartCycler real-time platform for rapid detection of MRSA from screening specimens. Eur. J. Clin. Microbiol. Infect. Dis. 26: Snyder, J. W., G. K. Munier, S. A. Heckman, P. Camp, and T. L. Overman Failure of the BD GeneOhm StaphSR assay for direct detection of methicillin-resistant and methicillin-susceptible Staphylococcus aureus isolates in positive blood cultures collected in the United States. J. Clin. Microbiol. 47: Snyder, J. W., G. K. Munier, and C. L. Johnson Comparison of the BD GeneOhm methicillin-resistant Staphylococcus aureus (MRSA) assay to culture by use of BBL CHROMagar MRSA for detection of MRSA in nasal surveillance cultures from intensive care unit patients. J. Clin. Microbiol. 48: Stamper, P. D., M. Cai, T. Howard, S. Speser, and K. C. Carroll Clinical validation of the molecular BD GeneOhm StaphSR assay for direct detection of Staphylococcus aureus and methicillin-resistant Staphylococcus aureus in positive blood cultures. J. Clin. Microbiol. 45: Veguilla, W., et al Two-year study evaluating the potential loss of methicillin resistance in a methicillin-resistant Staphylococcus aureus culture collection. J. Clin. Microbiol. 46: Wong, H., L. Louie, R. Y. Lo, and A. E. Simor Characterization of Staphylococcus aureus isolates with a partial or complete absence of staphylococcal cassette chromosome elements. J. Clin. Microbiol. 48: Zhang, S. X., S. J. Drews, J. Tomassi, and K. C. Katz Comparison of two versions of the IDI-MRSA assay using charcoal swabs for prospective nasal and non-nasal surveillance samples. J. Clin. Microbiol. 45:

Characterization of community and hospital Staphylococcus aureus isolates in Southampton, UK

Characterization of community and hospital Staphylococcus aureus isolates in Southampton, UK Journal of Medical Microbiology (2010), 59, 1084 1088 DOI 10.1099/jmm.0.018986-0 Characterization of community and hospital Staphylococcus aureus isolates in Southampton, UK S. M. Green, 1 P. Marsh, 1

More information

Multi-clonal origin of macrolide-resistant Mycoplasma pneumoniae isolates. determined by multiple-locus variable-number tandem-repeat analysis

Multi-clonal origin of macrolide-resistant Mycoplasma pneumoniae isolates. determined by multiple-locus variable-number tandem-repeat analysis JCM Accepts, published online ahead of print on 30 May 2012 J. Clin. Microbiol. doi:10.1128/jcm.00678-12 Copyright 2012, American Society for Microbiology. All Rights Reserved. 1 2 Multi-clonal origin

More information

Evaluation of the Xpert MRSA Assay on the GeneXpert Real-Time PCR. Platform for Rapid Detection of MRSA from Screening Specimens ACCEPTED

Evaluation of the Xpert MRSA Assay on the GeneXpert Real-Time PCR. Platform for Rapid Detection of MRSA from Screening Specimens ACCEPTED JCM Accepts, published online ahead of print on 6 August 2008 J. Clin. Microbiol. doi:10.1128/jcm.02487-07 Copyright 2008, American Society for Microbiology and/or the Listed Authors/Institutions. All

More information

Comparison of the BD MAX MRSA Assay and the BD GeneOhm MRSA. Achromopeptidase Assay for the Detection of Methicillin-Resistant Staphylococcus aureus

Comparison of the BD MAX MRSA Assay and the BD GeneOhm MRSA. Achromopeptidase Assay for the Detection of Methicillin-Resistant Staphylococcus aureus JCM Accepts, published online ahead of print on 18 July 2012 J. Clin. Microbiol. doi:10.1128/jcm.01496-12 Copyright 2012, American Society for Microbiology. All Rights Reserved. 1 2 3 Comparison of the

More information

Received 28 December 2007/Returned for modification 9 April 2008/Accepted 27 July 2008

Received 28 December 2007/Returned for modification 9 April 2008/Accepted 27 July 2008 JOURNAL OF CLINICAL MICROBIOLOGY, Oct. 2008, p. 3285 3290 Vol. 46, No. 10 0095-1137/08/$08.00 0 doi:10.1128/jcm.02487-07 Copyright 2008, American Society for Microbiology. All Rights Reserved. Evaluation

More information

A Guideline for the Molecular Typing of Canadian Epidemic Methicillin-Resistant Staphylococcus aureus Using spa Typing.

A Guideline for the Molecular Typing of Canadian Epidemic Methicillin-Resistant Staphylococcus aureus Using spa Typing. A Guideline for the Molecular Typing of Canadian Epidemic Methicillin-Resistant Staphylococcus aureus Using spa Typing. George R. Golding National Microbiology Laboratory Winnipeg, Manitoba AMMI-CACMID

More information

Genetic diversity of community-associated methicillin-resistant Staphylococcus aureus in southern Stockholm,

Genetic diversity of community-associated methicillin-resistant Staphylococcus aureus in southern Stockholm, ORIGINAL ARTICLE 10.1111/j.1469-0691.2007.01941.x Genetic diversity of community-associated methicillin-resistant Staphylococcus aureus in southern Stockholm, 2000 2005 H. Fang, G. Hedin, G. Li and C.

More information

Laboratory Evaluation of the BD MAX TM MRSA Assay

Laboratory Evaluation of the BD MAX TM MRSA Assay JCM Accepts, published online ahead of print on 14 May 2014 J. Clin. Microbiol. doi:10.1128/jcm.00237-14 Copyright 2014, American Society for Microbiology. All Rights Reserved. 1 Laboratory Evaluation

More information

Veerle Compernolle, Gerda Verschraegen, and Geert Claeys* Department of Microbiology, Ghent University Hospital, Ghent, Belgium

Veerle Compernolle, Gerda Verschraegen, and Geert Claeys* Department of Microbiology, Ghent University Hospital, Ghent, Belgium JOURNAL OF CLINICAL MICROBIOLOGY, Jan. 2007, p. 154 158 Vol. 45, No. 1 0095-1137/07/$08.00 0 doi:10.1128/jcm.01115-06 Copyright 2007, American Society for Microbiology. All Rights Reserved. Combined Use

More information

During High-Volume Clinical Use ACCEPTED. Healthcare, Evanston, IL, Northwestern University s Feinberg School of Medicine, Chicago,

During High-Volume Clinical Use ACCEPTED. Healthcare, Evanston, IL, Northwestern University s Feinberg School of Medicine, Chicago, JCM Accepts, published online ahead of print on 11 July 2007 J. Clin. Microbiol. doi:10.1128/jcm.00670-07 Copyright 2007, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

(multidrug-resistant Pseudomonas aeruginosa; MDRP)

(multidrug-resistant Pseudomonas aeruginosa; MDRP) 220 2009 (multidrug-resistant Pseudomonas aeruginosa; MDRP) 21 4 1 21 10 4 amikacin (AMK), imipenem/cilastatin (IPM), ciprofloxacin (CPFX) multidrug-resistant Pseudomonas aeruginosa (MDRP) CHROMagar TM

More information

Michael Hombach, 1 * Gaby E. Pfyffer, 1 Malgorzata Roos, 2 and Katja Lucke 1

Michael Hombach, 1 * Gaby E. Pfyffer, 1 Malgorzata Roos, 2 and Katja Lucke 1 JOURNAL OF CLINICAL MICROBIOLOGY, Nov. 2010, p. 3882 3887 Vol. 48, No. 11 0095-1137/10/$12.00 doi:10.1128/jcm.00670-10 Copyright 2010, American Society for Microbiology. All Rights Reserved. Detection

More information

Whole genome sequencing & new strain typing methods in IPC. Lyn Gilbert ACIPC conference Hobart, November 2015

Whole genome sequencing & new strain typing methods in IPC. Lyn Gilbert ACIPC conference Hobart, November 2015 Whole genome sequencing & new strain typing methods in IPC Lyn Gilbert ACIPC conference Hobart, November 2015 Why do strain typing? Evolution, population genetics, geographic distribution 2 Why strain

More information

The Challenge of Managing Staphylococcus aureus Bacteremia

The Challenge of Managing Staphylococcus aureus Bacteremia The Challenge of Managing Staphylococcus aureus Bacteremia M A R G A R E T G R A Y B S P F C S H P C L I N I C A L P R A C T I C E M A N A G E R N O R T H / I D P H A R M A C I S T A L B E R T A H E A

More information

Staphylococcus aureus Colonization and Infection in New York State Prisons

Staphylococcus aureus Colonization and Infection in New York State Prisons MAJOR ARTICLE Staphylococcus aureus Colonization and Infection in New York State Prisons Franklin D. Lowy, 1,2 Allison E. Aiello, 5 Meera Bhat, 1 Vicki D. Johnson-Lawrence, 5 Mei-Ho Lee, 1 Earl Burrell,

More information

Reduction in Workload and Reporting Time of MRSA Screening with MRSASelect. Medium versus Mannitol-Salt Medium Supplemented with Oxacillin ACCEPTED

Reduction in Workload and Reporting Time of MRSA Screening with MRSASelect. Medium versus Mannitol-Salt Medium Supplemented with Oxacillin ACCEPTED JCM Accepts, published online ahead of print on 30 January 2008 J. Clin. Microbiol. doi:10.1128/jcm.01253-07 Copyright 2008, American Society for Microbiology and/or the Listed Authors/Institutions. All

More information

Received 2 October 2002/Returned for modification 29 November 2002/Accepted 7 January 2003

Received 2 October 2002/Returned for modification 29 November 2002/Accepted 7 January 2003 JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 2003, p. 1687 1693 Vol. 41, No. 4 0095-1137/03/$08.00 0 DOI: 10.1128/JCM.41.4.1687 1693.2003 Copyright 2003, American Society for Microbiology. All Rights Reserved.

More information

EUROTRAVNET SCIENCE WATCH NOVEMBER-DECEMBER 2009

EUROTRAVNET SCIENCE WATCH NOVEMBER-DECEMBER 2009 www.eurotravnet.eu E u r o p e a n T r a v e l a n d T r o p i c a l M e d i c i n e N e t w o r k o f t h e I n t e r n a t i o n a l S o c i e t y o f T r a v e l M e d i c i n e E u r o p e a n C e

More information

Clinical Failure of Vancomycin Treatment of Staphylococcus aureus Infection in a Tertiary Care Hospital in Southern Brazil

Clinical Failure of Vancomycin Treatment of Staphylococcus aureus Infection in a Tertiary Care Hospital in Southern Brazil 224 BJID 2003; 7 (June) Clinical Failure of Vancomycin Treatment of Staphylococcus aureus Infection in a Tertiary Care Hospital in Southern Brazil Larissa Lutz, Adão Machado, Nadia Kuplich and Afonso Luís

More information

Rapid identification and resistance assessment: The future is mass spectrometry

Rapid identification and resistance assessment: The future is mass spectrometry Rapid identification and resistance assessment: The future is mass spectrometry Dr Sanmarié Schlebusch Director of Microbiology Mater Pathology Brisbane Outline Introduction Plug and play Pre-prep and

More information

Increasing Genetic Relatedness of Ciprofloxacin-Resistant Streptococcus pneumoniae Isolated in Canada from 1997 to 2005

Increasing Genetic Relatedness of Ciprofloxacin-Resistant Streptococcus pneumoniae Isolated in Canada from 1997 to 2005 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Mar. 2008, p. 1190 1194 Vol. 52, No. 3 0066-4804/08/$08.00 0 doi:10.1128/aac.01260-07 Copyright 2008, American Society for Microbiology. All Rights Reserved. Increasing

More information

mecrl-meci, and fema-femb in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus

mecrl-meci, and fema-femb in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus ANTIMICROBiAL AGENTS AND CHEMOTHERAPY, Dec. 1992, p. 2617-2621 66-484/92/122617-5$2./ Copyright X 1992, American Society for Microbiology Vol. 36, No. 12 Survey of the Methicillin Resistance-Associated

More information

Resistance to linezolid in enterococci and staphylococci referred to the national reference laboratory

Resistance to linezolid in enterococci and staphylococci referred to the national reference laboratory Resistance to linezolid in enterococci and staphylococci referred to the national reference laboratory Dr Danièle Meunier, AMRHAI BSAC - Antimicrobial Susceptibility Testing User Days Oxazolidinone Linezolid

More information

Western Australian Methicillin-Resistant Staphylococcus aureus (MRSA) and Vancomycin Resistant Enterococcus (VRE) Epidemiology and Typing Report

Western Australian Methicillin-Resistant Staphylococcus aureus (MRSA) and Vancomycin Resistant Enterococcus (VRE) Epidemiology and Typing Report Australian Collaborating Centre for Enterococcus and Staphylococcus Species (ACCESS) Typing and Research Microbiology and Infectious Diseases Department PathWest Laboratory Medicine-WA, Royal Perth Hospital

More information

Available online at journal homepage:

Available online at  journal homepage: Journal of Microbiology, Immunology and Infection (2012) 45, 208e213 Available online at www.sciencedirect.com journal homepage: www.e-jmii.com ORIGINAL ARTICLE Risk factors and molecular analysis of Panton-Valentine

More information

Guidance on screening and confirmation of carbapenem resistant Enterobacteriacae (CRE) December 12, 2011

Guidance on screening and confirmation of carbapenem resistant Enterobacteriacae (CRE) December 12, 2011 Guidance on screening and confirmation of carbapenem resistant Enterobacteriacae (CRE) December 12, 2011 Objectives: To discuss the guidelines for detection of CRE in the laboratory setting. To review

More information

Received 4 September 2008/Returned for modification 24 October 2008/Accepted 25 December 2008

Received 4 September 2008/Returned for modification 24 October 2008/Accepted 25 December 2008 JOURNAL OF CLINICAL MICROBIOLOGY, Mar. 2009, p. 758 764 Vol. 47, No. 3 0095-1137/09/$08.00 0 doi:10.1128/jcm.01714-08 Copyright 2009, American Society for Microbiology. All Rights Reserved. Multicenter

More information

Exploring the evolution of MRSA with Whole Genome Sequencing

Exploring the evolution of MRSA with Whole Genome Sequencing Exploring the evolution of MRSA with Whole Genome Sequencing PhD student: Zheng WANG Supervisor: Professor Margaret IP Department of Microbiology, CUHK Joint Graduate Seminar Department of Microbiology,

More information

Gram Positive Coccus Staphylococci Dr. Hala Al Daghistani

Gram Positive Coccus Staphylococci Dr. Hala Al Daghistani Medical bacteriology Gram Positive Coccus Staphylococci Dr. Hala Al Daghistani The Staphylococci are gram-positive spherical cells, nonmotile, usually arranged in grapelike irregular clusters. Some are

More information

Validation of Vitek version 7.01 software for testing staphylococci against vancomycin

Validation of Vitek version 7.01 software for testing staphylococci against vancomycin Diagnostic Microbiology and Infectious Disease 43 (2002) 135 140 www.elsevier.com/locate/diagmicrobio Validation of Vitek version 7.01 software for testing staphylococci against vancomycin P.M. Raney a,

More information

Infectious Disease Diagnostics in the Geisinger Health System

Infectious Disease Diagnostics in the Geisinger Health System 10X Essentials Infectious Disease Diagnostics in the Geisinger Health System NEW: Rapid GeneXpert PCR NEW Test Codes: MRSAP, MRSA Screen PCR CDIFP, C. difficile/ Epi PCR EVP, Enterovirus PCR Specimens

More information

* these authors contributed equally to the preparation of this report

* these authors contributed equally to the preparation of this report AAC Accepts, published online ahead of print on June 00 Antimicrob. Agents Chemother. doi:0./aac.000-0 Copyright 00, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

The first Staphylococcus aureus isolates with reduced susceptibility to vancomycin in Poland

The first Staphylococcus aureus isolates with reduced susceptibility to vancomycin in Poland Journal of Antimicrobial Chemotherapy (2002) 50, 1065 1069 DOI: 10.1093/jac/dkf252 The first Staphylococcus aureus isolates with reduced susceptibility to vancomycin in Poland Jolanta Krzysztoá-Russjan

More information

Evaluation of methicillin-resistant Staphylococcus aureus (MRSA) colonization in pigs and people that work with pigs in Ontario Veterinary College

Evaluation of methicillin-resistant Staphylococcus aureus (MRSA) colonization in pigs and people that work with pigs in Ontario Veterinary College Evaluation of methicillin-resistant Staphylococcus aureus (MRSA) colonization in pigs and people that work with pigs in Ontario Veterinary College Final Report September 2007 This research has been possible

More information

Materials and Methods

Materials and Methods 652 Laboratory Characterization of Methicillin-Resistant Staphylococcus aureus in Canadian Hospitals: Results of 5 Years of National Surveillance, 1995 1999 Andrew E. Simor, 1 Marianna Ofner-Agostini,

More information

INTRODUCTION. Department of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy; 2

INTRODUCTION. Department of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy; 2 New Microbiologica, 39, 4, 269-273, 2016, ISN 1121-7138 FULL PAPER Resistance to linezolid in Staphylococcus spp. clinical isolates associated with ribosomal binding site modifications: novel mutation

More information

Incidence, case fatality and genotypes causing Clostridium difficile infections, Finland, 2008*

Incidence, case fatality and genotypes causing Clostridium difficile infections, Finland, 2008* ORIGINAL ARTICLE EPIDEMIOLOGY Incidence, case fatality and genotypes causing Clostridium difficile infections, Finland, 2008* S. M. Kotila 1, A. Virolainen 1, M. Snellman 1, S. Ibrahem 1, J. Jalava 2 and

More information

Characterization and proposed nomenclature of epidemic strains of MRSA in Canada

Characterization and proposed nomenclature of epidemic strains of MRSA in Canada ORIGINAL ARTICLE Characterization and proposed nomenclature of epidemic strains of MRSA in Canada AE Simor MD FRCPC 1,3, D Boyd MSc 4, L Louie ART 1, A McGeer MD FRCPC 2,3, M Mulvey PhD 4, BM Willey ART

More information

by the DiversiLab System and Pulsed-Field Gel Electrophoresis Epidemiology, Emory University, Atlanta, Georgia 30329; 3 Bacterial Barcodes, Inc.

by the DiversiLab System and Pulsed-Field Gel Electrophoresis Epidemiology, Emory University, Atlanta, Georgia 30329; 3 Bacterial Barcodes, Inc. JCM Accepts, published online ahead of print on June 00 J. Clin. Microbiol. doi:./jcm.00-0 Copyright 00, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights Reserved. 1

More information

Ueli von Ah, Dieter Wirz, and A. U. Daniels*

Ueli von Ah, Dieter Wirz, and A. U. Daniels* JOURNAL OF CLINICAL MICROBIOLOGY, June 2008, p. 2083 2087 Vol. 46, No. 6 0095-1137/08/$08.00 0 doi:10.1128/jcm.00611-08 Copyright 2008, American Society for Microbiology. All Rights Reserved. Rapid Differentiation

More information

Received 24 August 2010/Returned for modification 7 November 2010/Accepted 7 February 2011

Received 24 August 2010/Returned for modification 7 November 2010/Accepted 7 February 2011 JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 2011, p. 1583 1587 Vol. 49, No. 4 0095-1137/11/$12.00 doi:10.1128/jcm.01719-10 Copyright 2011, American Society for Microbiology. All Rights Reserved. Clinical and

More information

Received 30 March 2005; returned 16 June 2005; revised 8 September 2005; accepted 12 September 2005

Received 30 March 2005; returned 16 June 2005; revised 8 September 2005; accepted 12 September 2005 Journal of Antimicrobial Chemotherapy (2005) 56, 1047 1052 doi:10.1093/jac/dki362 Advance Access publication 20 October 2005 Evaluation of PPI-0903M (T91825), a novel cephalosporin: bactericidal activity,

More information

Affinity of Doripenem and Comparators to Penicillin-Binding Proteins in Escherichia coli and ACCEPTED

Affinity of Doripenem and Comparators to Penicillin-Binding Proteins in Escherichia coli and ACCEPTED AAC Accepts, published online ahead of print on February 00 Antimicrob. Agents Chemother. doi:./aac.01-0 Copyright 00, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

(PFGE) Clostridium di$cile

(PFGE) Clostridium di$cile 2009 205 (PFGE) Clostridium di$cile 1) 3) 2) 2) 2) 2, 4) 5) 1) 2) 3) 4) 5) 21 5 22 21 8 31 2004 1 2008 12 5 Clostridium di$cile (C. di$cile) 340 248 A /B 141 (56.9) A /B 26 (10.5) A /B 81 (32.7) 136 (PFGE)

More information

A Norazah, S M Liew, A G M Kamel, Y T Koh, V K E Lim. O r i g i n a l A r t i c l e

A Norazah, S M Liew, A G M Kamel, Y T Koh, V K E Lim. O r i g i n a l A r t i c l e Singapore Med J 2001 Vol 42(1) : 015-019 O r i g i n a l A r t i c l e DNA Fingerprinting of Methicillin-Resistant Staphylococcus Aureus by Pulsed-Field Gel Electrophoresis (PFGE): Comparison of Strains

More information

Comparison of Different Phenotypic Approaches to Screen and Detect mecc-harboring Methicillin-Resistant Staphylococcus aureus

Comparison of Different Phenotypic Approaches to Screen and Detect mecc-harboring Methicillin-Resistant Staphylococcus aureus Edinburgh Research Explorer Comparison of Different Phenotypic Approaches to Screen and Detect mecc-harboring Methicillin-Resistant Staphylococcus aureus Citation for published version: Kriegeskorte, A,

More information

Analysis of phenotypic variants of the serogroup C ET-15 clone of Neisseria meningitidis by pulsed-field gel electrophoresis.

Analysis of phenotypic variants of the serogroup C ET-15 clone of Neisseria meningitidis by pulsed-field gel electrophoresis. JCM Accepts, published online ahead of print on 9 May 2007 J. Clin. Microbiol. doi:10.1128/jcm.00908-07 Copyright 2007, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

Nosocomial transmission of community-associated methicillin-resistant Staphylococcus aureus in Danish Hospitals

Nosocomial transmission of community-associated methicillin-resistant Staphylococcus aureus in Danish Hospitals J Antimicrob Chemother 2012; 67: 1775 1780 doi:10.1093/jac/dks125 Advance Access publication 20 April 2012 Nosocomial transmission of community-associated methicillin-resistant Staphylococcus aureus in

More information

Staphylococci. What s to be Covered. Clinical Scenario #1

Staphylococci. What s to be Covered. Clinical Scenario #1 Staphylococci Micrococcus, which, when limited in its extent and activity, causes acute suppurative inflammation (phlegmon), produces, when more extensive and intense in its action on the human system,

More information

New genomic typing method MLST

New genomic typing method MLST New genomic typing method MLST Bon KIMURA fingerprinting PFGE DNA multilocus sequence typingmlst alleles PFGE MLST 1990 PCR 1 PCR DNA PFGE 1 PFGE RAPDrandomly amplified polymorphic DNA 3 AFLPAmplified

More information

ology of borderline oxacillin-resistant Staphylococcus aureus in pediatric cystic fibrosis..

ology of borderline oxacillin-resistant Staphylococcus aureus in pediatric cystic fibrosis.. Epidemiology of borderline oxacillin-resistant Staphylococcus aureus in pediatric cystic fibrosis. Timothy Ronan Leahy, Yvonne Yau, Eshetu Atenafu, Mary Corey, Felix Ratjen, Valerie Waters To cite this

More information

Antimicrobial resistance and virulence genes in bacteria

Antimicrobial resistance and virulence genes in bacteria Antimicrobial resistance and virulence genes in bacteria Johanne Ahrenfeldt PhD Student BSU course - November 2016 1 How to analyse WGS data part 2 an introduction to CGEs methods KmerFinder SpeciesFinder

More information

Received 31 January 2007/Returned for modification 29 March 2007/Accepted 12 June 2007

Received 31 January 2007/Returned for modification 29 March 2007/Accepted 12 June 2007 JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2007, p. 2554 2563 Vol. 45, No. 8 0095-1137/07/$08.00 0 doi:10.1128/jcm.00245-07 Copyright 2007, American Society for Microbiology. All Rights Reserved. The Emergence

More information

Extreme Genetic Diversity of Methicillin-Resistant Staphylococcus epidermidis Strains Disseminated among Healthy Japanese Children

Extreme Genetic Diversity of Methicillin-Resistant Staphylococcus epidermidis Strains Disseminated among Healthy Japanese Children JOURNAL OF CLINICAL MICROBIOLOGY, Nov. 2008, p. 3778 3783 Vol. 46, No. 11 0095-1137/08/$08.00 0 doi:10.1128/jcm.02262-07 Copyright 2008, American Society for Microbiology. All Rights Reserved. Extreme

More information

ALERT. Clinical microbiology considerations related to the emergence of. New Delhi metallo beta lactamases (NDM 1) and Klebsiella

ALERT. Clinical microbiology considerations related to the emergence of. New Delhi metallo beta lactamases (NDM 1) and Klebsiella ALERT Clinical microbiology considerations related to the emergence of New Delhi metallo beta lactamases (NDM 1) and Klebsiella pneumoniae carbapenemases (KPC) amongst hospitalized patients in South Africa

More information

Structural Variation and Medical Genomics

Structural Variation and Medical Genomics Structural Variation and Medical Genomics Andrew King Department of Biomedical Informatics July 8, 2014 You already know about small scale genetic mutations Single nucleotide polymorphism (SNPs) Deletions,

More information

Title: Rapid PCR Tests for MRSA in Hospitalized Patients: Diagnostic Accuracy, Clinical and Cost-Effectiveness

Title: Rapid PCR Tests for MRSA in Hospitalized Patients: Diagnostic Accuracy, Clinical and Cost-Effectiveness Title: Rapid PCR Tests for MRSA in Hospitalized Patients: Diagnostic Accuracy, Clinical and Cost-Effectiveness Date: 23 Oct 2007 Context and Policy Issues: Staphylococcus aureus (SA), a gram positive bacterium,

More information

ACCEPTED. Comparison of disk diffusion and agar dilution methods for erythromycin and

ACCEPTED. Comparison of disk diffusion and agar dilution methods for erythromycin and AAC Accepts, published online ahead of print on January 00 Antimicrob. Agents Chemother. doi:./aac.000-0 Copyright 00, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

Educational Workshops 2016

Educational Workshops 2016 Educational Workshops 2016 Keynote CPE Screening We are grateful to Dr Andrew Dodgson, Consultant Microbiologist, Public Health England and Central Manchester Hospitals NHS Foundation Trust Terminology

More information

Product # Kit Components

Product # Kit Components 3430 Schmon Parkway Thorold, ON, Canada L2V 4Y6 Phone: (905) 227-8848 Fax: (905) 227-1061 Email: techsupport@norgenbiotek.com Pneumocystis jirovecii PCR Kit Product # 42820 Product Insert Background Information

More information

What s to be Covered. Microbiology of staphylococci Epidemiology of S. aureus infections Pathogenesis of S. aureus infections

What s to be Covered. Microbiology of staphylococci Epidemiology of S. aureus infections Pathogenesis of S. aureus infections Staphylococci Micrococcus, which, when limited in its extent and activity, causes acute suppurative inflammation (phlegmon), produces, when more extensive and intense in its action on the human system,

More information

Received 21 April 1997/Returned for modification 30 June 1997/Accepted 28 August 1997

Received 21 April 1997/Returned for modification 30 June 1997/Accepted 28 August 1997 JOURNAL OF CLINICAL MICROBIOLOGY, Dec. 1997, p. 3258 3263 Vol. 35, No. 12 0095-1137/97/$04.00 0 Copyright 1997, American Society for Microbiology Comparison of Agar Dilution, Broth Microdilution, E-Test,

More information

Rifampin Resistance. Charlottesville, Virginia i0w organisms in Trypticase soy broth (BBL Microbiology

Rifampin Resistance. Charlottesville, Virginia i0w organisms in Trypticase soy broth (BBL Microbiology ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Apr. 1980, p. 658-662 0066-4804/80/04-0658/05$02.00/0 Vol. 17, No. 14 Treatment of Experimental Staphylococcal Infections: Effect of Rifampin Alone and in Combination

More information

Received 31 July 1992/Accepted 12 November 1992

Received 31 July 1992/Accepted 12 November 1992 ANTMCROBAL AGENTS AND CHEMOTHERAPY, Feb 1993, p 32-36 66-8/93/232-5$2/ Copyright 1993, American Society for Microbiology Vol 37, No 2 Abnormal Peptidoglycan Produced in a Methicillin-Resistant Strain of

More information

Likelihood that an unsubtypeable Influenza A result. in the Luminex xtag Respiratory Virus Panel. is indicative of novel A/H1N1 (swine-like) influenza

Likelihood that an unsubtypeable Influenza A result. in the Luminex xtag Respiratory Virus Panel. is indicative of novel A/H1N1 (swine-like) influenza JCM Accepts, published online ahead of print on 3 June 2009 J. Clin. Microbiol. doi:10.1128/jcm.01027-09 Copyright 2009, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

1) 1) 1) 2) 2) (ICU) Key words: (ICU), ( ) 1 30 TEL: FAX: Vol. 17 No

1) 1) 1) 2) 2) (ICU) Key words: (ICU), ( ) 1 30 TEL: FAX: Vol. 17 No 2007 277 1) 1) 1) 2) 2) 3) 4) 5) 6) 1) 2) 3) 4) 5) 6) 18 10 17 19 8 20 16 7 1 (ICU) 20 2x 1.6 2.2 2SD 14 1 4 1 10 7 3 2 9 7.6; 95 2.37 24.62 6 4 5 1 DNA SpeI 9 2 A 7 B 2 A 3 B 1 ICU ICU 7 20 10 5 Key words:

More information

number Done by Corrected by Doctor Hamed Al-Zoubi

number Done by Corrected by Doctor Hamed Al-Zoubi number 9 Done by Mohammed Al askar & Muhammed Alajmi Corrected by مها أبو عجمية Doctor Hamed Al-Zoubi 1 Gram positive cocci There are 3 types of gram positive cocci :- 1- Staphylococcus ( what we are going

More information

Evolution of Nasal Carriage of Methicillin-Resistant Coagulase-Negative Staphylococci in a Remote Population

Evolution of Nasal Carriage of Methicillin-Resistant Coagulase-Negative Staphylococci in a Remote Population SUPPLEMENTAL MATERIAL REFERENCES CONTENT ALERTS Evolution of Nasal Carriage of Methicillin-Resistant Coagulase-Negative Staphylococci in a Remote Population David Lebeaux, François Barbier, Cécile Angebault,

More information

Diphtheria infections caused by the different toxigenic biotypes of Corynebacterium diphtheriae

Diphtheria infections caused by the different toxigenic biotypes of Corynebacterium diphtheriae JCM Accepts, published online ahead of print on 5 December 00 J. Clin. Microbiol. doi:0.8/jcm.054-0 Copyright 00, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights Reserved.

More information

Results of Disk Diffusion Testing with Cefoxitin Correlate with Presence of meca in Staphylococcus spp.

Results of Disk Diffusion Testing with Cefoxitin Correlate with Presence of meca in Staphylococcus spp. JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2005, p. 3818 3823 Vol. 43, No. 8 0095-1137/05/$08.00 0 doi:10.1128/jcm.43.8.3818 3823.2005 Copyright 2005, American Society for Microbiology. All Rights Reserved.

More information

Discussion points CLSI M100 S19 Update. #1 format of tables has changed. #2 non susceptible category

Discussion points CLSI M100 S19 Update. #1 format of tables has changed. #2 non susceptible category Discussion points 2009 CLSI M100 S19 Update Nebraska Public Health Laboratory Changes most important to routine antimicrobial susceptibility testing. Documents available Janet Hindler discussion slide

More information

Sensitivity of Surveillance Testing for Multidrug-Resistant Gram-Negative Bacteria in the

Sensitivity of Surveillance Testing for Multidrug-Resistant Gram-Negative Bacteria in the JCM Accepts, published online ahead of print on 20 August 2014 J. Clin. Microbiol. doi:10.1128/jcm.02369-14 Copyright 2014, American Society for Microbiology. All Rights Reserved. 1 2 Sensitivity of Surveillance

More information

Kit Components Product # EP42720 (24 preps) MDx 2X PCR Master Mix 350 µl Cryptococcus neoformans Primer Mix 70 µl Cryptococcus neoformans Positive

Kit Components Product # EP42720 (24 preps) MDx 2X PCR Master Mix 350 µl Cryptococcus neoformans Primer Mix 70 µl Cryptococcus neoformans Positive 3430 Schmon Parkway Thorold, ON, Canada L2V 4Y6 Phone: 866-667-4362 (905) 227-8848 Fax: (905) 227-1061 Email: techsupport@norgenbiotek.com Cryptococcus neoformans End-Point PCR Kit Product# EP42720 Product

More information

Received 21 October 2005/Returned for modification 23 December 2005/Accepted 21 May 2006

Received 21 October 2005/Returned for modification 23 December 2005/Accepted 21 May 2006 JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2006, p. 2904 2908 Vol. 44, No. 8 0095-1137/06/$08.00 0 doi:10.1128/jcm.02211-05 Copyright 2006, American Society for Microbiology. All Rights Reserved. Concurrent

More information

May 11, Ceftriaxone for MSSA. Daptomycin Dosing Weight. Candidiasis Treatment

May 11, Ceftriaxone for MSSA. Daptomycin Dosing Weight. Candidiasis Treatment Diagnostics and Debates: An Update on Rapid Diagnostic Testing and Current Controversies in Infectious Diseases Nicholas Torney, PharmD, BCPS Derek Vander Horst, PharmD Munson Medical Center WMSHP Annual

More information

Performance of Various Testing Methodologies for Detection of Heteroresistant Vancomycin-Intermediate Staphylococcus aureus in Bloodstream Isolates

Performance of Various Testing Methodologies for Detection of Heteroresistant Vancomycin-Intermediate Staphylococcus aureus in Bloodstream Isolates JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 2011, p. 1489 1494 Vol. 49, No. 4 0095-1137/11/$12.00 doi:10.1128/jcm.02302-10 Copyright 2011, American Society for Microbiology. All Rights Reserved. Performance

More information

Typing of ônh ôstaphylococcus epidermidis ôns ô Colonizing in Human Nares by Pulsed-Field Gel Electrophoresis

Typing of ônh ôstaphylococcus epidermidis ôns ô Colonizing in Human Nares by Pulsed-Field Gel Electrophoresis Microbiol. Immunol., 39(5), 315-319, 1995 Typing of ônh ôstaphylococcus epidermidis ôns ô Colonizing in Human Nares by Pulsed-Field Gel Electrophoresis Lan Hu*, Akiko Umeda, and Kazunobu Amako Department

More information

Malaysian Journal of Microbiology

Malaysian Journal of Microbiology Malaysian Journal of Microbiology, Vol xx(x) 20xx, pp. xxx-xxx Malaysian Journal of Microbiology Published by Malaysian Society for Microbiology (In since 2011) Benzalkonium chloride effectiveness as a

More information

International Clones of Methicillin-Resistant Staphylococcus aureus in Two Hospitals in Miami, Florida

International Clones of Methicillin-Resistant Staphylococcus aureus in Two Hospitals in Miami, Florida JOURNAL OF CLINICAL MICROBIOLOGY, Feb. 2004, p. 542 547 Vol. 42, No. 2 0095-1137/04/$08.00 0 DOI: 10.1128/JCM.42.2.542 547.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. International

More information

Received 7 February 2003/Returned for modification 7 April 2003/Accepted 17 April 2003

Received 7 February 2003/Returned for modification 7 April 2003/Accepted 17 April 2003 JOURNAL OF CLINICAL MICROBIOLOGY, Sept. 2003, p. 4194 4216 Vol. 41, No. 9 0095-1137/03/$08.00 0 DOI: 10.1128/JCM.41.9.4194 4216.2003 Clonal Distribution of Invasive Pneumococcal Isolates from Children

More information

OUTLINE Laboratory Detection and Reporting of Streptococcus agalactiae

OUTLINE Laboratory Detection and Reporting of Streptococcus agalactiae OUTLINE Laboratory Detection and Reporting of Streptococcus agalactiae I. Importance of prenatal screening strategies II. Past approaches Erik Munson Clinical Microbiology Wheaton Franciscan Laboratory

More information

Ganciclovir-resistant CMV retinitis in a patient with wild-type plasma CMV. North Carolina School of Medicine, Chapel Hill, NC

Ganciclovir-resistant CMV retinitis in a patient with wild-type plasma CMV. North Carolina School of Medicine, Chapel Hill, NC JCM Accepts, published online ahead of print on 15 February 2012 J. Clin. Microbiol. doi:10.1128/jcm.00029-12 Copyright 2012, American Society for Microbiology. All Rights Reserved. 1 Ganciclovir-resistant

More information

Frozen Master Mix Modification of Commercial Reverse-transcriptase PCR. for Detection of Influenza and Respiratory Syncytial Viruses

Frozen Master Mix Modification of Commercial Reverse-transcriptase PCR. for Detection of Influenza and Respiratory Syncytial Viruses JCM Accepted Manuscript Posted Online 28 January 2015 J. Clin. Microbiol. doi:10.1128/jcm.03457-14 Copyright 2015, American Society for Microbiology. All Rights Reserved. 1 2 Frozen Master Mix Modification

More information

Retrospective and Prospective Verification of the Cepheid Xpert Flu Assay

Retrospective and Prospective Verification of the Cepheid Xpert Flu Assay JCM Accepts, published online ahead of print on 20 July 2011 J. Clin. Microbiol. doi:10.1128/jcm.01162-11 Copyright 2011, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

Staph aureus: New nasties and how to tackle them!

Staph aureus: New nasties and how to tackle them! Staph aureus: New nasties and how to tackle them! Brenda Dale Health Protection Unit, Dartington Adam Brown Doncaster and Bassetlaw Hospitals NHS Foundation Trust Hosted by Maria Bennallick maria@webbertraining.com

More information

Laboratory Detection and Reporting of Streptococcus agalactiae

Laboratory Detection and Reporting of Streptococcus agalactiae Laboratory Detection and Reporting of Streptococcus agalactiae Erik Munson Clinical Microbiology Wheaton Franciscan Laboratory Milwaukee, Wisconsin The presenter states no conflict of interest and has

More information

Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel meca homologue mecc

Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel meca homologue mecc Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel meca homologue mecc Ewan M. Harrison, Gavin K. Paterson, Matthew T.G. Holden, Jesper Larsen, Marc Stegger, Anders

More information

Original Article Clinical Microbiology INTRODUCTION

Original Article Clinical Microbiology INTRODUCTION Original Article Clinical Microbiology Ann Lab Med 2019;39:158-166 https://doi.org/10.3343/alm.2019.39.2.158 ISSN 2234-3806 eissn 2234-3814 Impact of Community-Onset Methicillin-Resistant Staphylococcus

More information

Supplementary note: Comparison of deletion variants identified in this study and four earlier studies

Supplementary note: Comparison of deletion variants identified in this study and four earlier studies Supplementary note: Comparison of deletion variants identified in this study and four earlier studies Here we compare the results of this study to potentially overlapping results from four earlier studies

More information

Received 10 October 2008/Returned for modification 15 March 2009/Accepted 1 June 2009

Received 10 October 2008/Returned for modification 15 March 2009/Accepted 1 June 2009 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Aug. 2009, p. 3447 3452 Vol. 53, No. 8 0066-4804/09/$08.00 0 doi:10.1128/aac.01365-08 Copyright 2009, American Society for Microbiology. All Rights Reserved. Prospective

More information

Dissemination of New Methicillin-Resistant Staphylococcus aureus Clones in the Community

Dissemination of New Methicillin-Resistant Staphylococcus aureus Clones in the Community JOURNAL OF CLINICAL MICROBIOLOGY, Nov. 2002, p. 4289 4294 Vol. 40, No. 11 0095-1137/02/$04.00 0 DOI: 10.1128/JCM.40.11.4289 4294.2002 Copyright 2002, American Society for Microbiology. All Rights Reserved.

More information

Molecular Epidemiology of Tuberculosis. Kathy DeRiemer, PhD, MPH School of Medicine University of California, Davis

Molecular Epidemiology of Tuberculosis. Kathy DeRiemer, PhD, MPH School of Medicine University of California, Davis Molecular Epidemiology of Tuberculosis Kathy DeRiemer, PhD, MPH School of Medicine University of California, Davis Overview TB transmission and pathogenesis Genotyping methods Genotyping for clinical management

More information

CHAPTER 4 RESULTS. showed that all three replicates had similar growth trends (Figure 4.1) (p<0.05; p=0.0000)

CHAPTER 4 RESULTS. showed that all three replicates had similar growth trends (Figure 4.1) (p<0.05; p=0.0000) CHAPTER 4 RESULTS 4.1 Growth Characterization of C. vulgaris 4.1.1 Optical Density Growth study of Chlorella vulgaris based on optical density at 620 nm (OD 620 ) showed that all three replicates had similar

More information

Performance of the BD GeneOhm MRSA Achromopeptidase (ACP) Extraction for Real-time PCR Detection of Methicillin-resistant

Performance of the BD GeneOhm MRSA Achromopeptidase (ACP) Extraction for Real-time PCR Detection of Methicillin-resistant JCM Accepts, published online ahead of print on 20 April 2011 J. Clin. Microbiol. doi:10.1128/jcm.02431-10 Copyright 2011, American Society for Microbiology and/or the Listed Authors/Institutions. All

More information

Faires et al. BMC Infectious Diseases 2012, 12:290

Faires et al. BMC Infectious Diseases 2012, 12:290 Faires et al. BMC Infectious Diseases 2012, 12:290 RESEARCH ARTICLE Open Access A prospective study to examine the epidemiology of methicillin-resistant Staphylococcus aureus and Clostridium difficile

More information

Vancomycin MIC for Methicillin-Resistant Coagulase-Negative Staphylococcus. sp.: Evaluation of the Broth Microdilution and Etest Methods

Vancomycin MIC for Methicillin-Resistant Coagulase-Negative Staphylococcus. sp.: Evaluation of the Broth Microdilution and Etest Methods JCM Accepts, published online ahead of print on 22 September 2010 J. Clin. Microbiol. doi:10.1128/jcm.01182-10 Copyright 2010, American Society for Microbiology and/or the Listed Authors/Institutions.

More information

Received 24 September 2009/Returned for modification 8 November 2009/Accepted 19 December 2009

Received 24 September 2009/Returned for modification 8 November 2009/Accepted 19 December 2009 JOURNAL OF CLINICAL MICROBIOLOGY, Mar. 2010, p. 720 727 Vol. 48, No. 3 0095-1137/10/$12.00 doi:10.1128/jcm.01890-09 Copyright 2010, American Society for Microbiology. All Rights Reserved. Emergence of

More information

MRC-Holland MLPA. Description version 08; 30 March 2015

MRC-Holland MLPA. Description version 08; 30 March 2015 SALSA MLPA probemix P351-C1 / P352-D1 PKD1-PKD2 P351-C1 lot C1-0914: as compared to the previous version B2 lot B2-0511 one target probe has been removed and three reference probes have been replaced.

More information