RECENT PUBLICATION LIST

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1 RECENT PUBLICATION LIST 9 September O. Edholm and J. F. NAGLE, Areas of Molecules in Membranes Consisting of Mixtures. Biophysical Journal 89, (2005) N. Kucerka, Y. Liu, N. Chu, H.I. Petrache, S. Tristram-Nagle and J. F. NAGLE, Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles. Biophysical Journal 88, (2005) N. Chu, N. Kucerka, Y. Liu, S. Tristram-Nagle and J. F. NAGLE, Anomalous Swelling of Lipid Bilayer Stacks Is Caused By Softening of the Bending Modulus. Phys Rev E. 71, (2005) J. F. NAGLE, Could Diffuse Scattering of X-rays and/or Neutrons Provide Structural Information about Rafts? Biophysical Discussions (2004) S. Tristram-Nagle, R.N.A.H. Lewis, J.W. Blickenstaff, M. DiPrima, B.F. Marques, R.N. McElhaney, J.F. NAGLE and J.W. Schneider, Thermofynamic and Structural Characterization of Amino Acid-Linked Dialkyl Lipids. Chem. Phys. Lipids, 134, (2005). 143 Y. Liu and J.F. NAGLE, Diffuse Scattering Provides Material Parameters and Electron Density Profiles of Biomembranes. Phys. Rev. E 69, (2004). 142 S. Tristram-Nagle and J. F. NAGLE Lipid Bilayers: Thermodynamics, Structure, Fluctuations and Interactions. Invited paper for Chem. Phys. Lipids 127, 3-14 (2004). 141 H. I. Petrache, S. Tristram-Nagle, K. Gawrisch, D. Harries, V. A. Parsegian and J. F. NAGLE, Structure and Fluctuations of Charged Phosphatidylserine Bilayers in the Absence of Salt. Biophys. J. 86, (2004). 140 N. Kucerka, J. F. NAGLE, S. E. Feller and P. Balgavy, Models to Analyze Small Angle Neutron Neutron Scattering from Unilamellar Vesicles. Phys. Rev. E 69, (2004). 139 NAGLE, J. F., Entropy of Distinguishable Particles. J. Stat. Phys. 117, (2004). 138 S. Tristram-Nagle, Y. Liu, J. Legleiter and J. F. NAGLE, Structure of Gel Phase DMPC Determined by X-ray Diffraction, Biophys. J. 83, (2002). 137 P. C. Mason, J. F. NAGLE, R. M. Epand and J. Katsaras, Anomalous Swelling in Phospholipid Bilayers Is Not Coupled to the Formation of a Ripple Phase, Phys. Rev. E Rapid Communications 63, [1-4] (2001). 136 Yulia Lyatskaya, Yufeng Liu, Stephanie Tristram-Nagle, John Katsaras and John F. NAGLE, Method for Obtaining Structure and Interactions from Oriented Lipid Bilayers, Phys Rev E. 63, [1-9] (2001). 135 Lewis, R. N. A. H., S. Tristram-Nagle, J. F. NAGLE and R. N. McElhaney, The Thermotropic Phase Behavior of Cationic Lipid Membranes: Calorimetric, Infrared, Spectroscopic and X-ray Diffraction Studies of Lipid Bilayer Membranes

2 2 Composed of 1.2-Di-O-Myristoyl-3-N,N,N-Trimethylaminopropane (DM-TAP). Biochim. Biophys. Acta 1510, (2001). 134 NAGLE, J. F. and S. Tristram-Nagle, Structure of Lipid Bilayers, Biochim. Biophys. Acta Reviews in Biomembranes, 1469, (2000). 133 NAGLE, J. F. and S. Tristram-Nagle, Lipid Bilayer Structure, Current Opinions in Structural Biology 10, (2000). 132 Katsaras, J., S. Tristram-Nagle, Y. Liu, R. L. Headrick, E. Fontes, P. C. Mason and J. F. NAGLE, Clarification of the Ripple Phase of Lecithin Bilayers using Fully Hydrated, Aligned Samples. Phys. Rev. E. 61, (2000). 131 NAGLE, John F. and Stephanie Tristram-Nagle, Structure and Interactions of Lipid Bilayers: Role of Fluctuation, for Lipid Bilayers: Structure and Interactions, (Editors, J. Katsaras and T. Gutberlet) in Springer-Verlag s Biological Physics series (Berlin, 2000), pp NAGLE, John F., Yufeng Liu, Stephanie Tristram-Nagle, Richard M. Epand and Ruth E. Stark, Re-analysis of Magic Angle Spinning NMR Determination of Interlamellar Waters, Biophys. J. 77, (1999). 129 Tristram-Nagle, S, Y. Isaacson, Y. Lyatskaya, Y. Liu, K. Brummond, J. Katsaras and J. F. NAGLE, Polymorphism in MPPC, Chem. Phys. Lipids 100, (1999). 128 NAGLE, J. F. and J. Katsaras, Absence of a Vestigial Vapor Pressure Paradox, Phys. Rev. E. 59, (1999). 127 Petrache, H. I., K. Tu and J. F. NAGLE, Analysis of Simulated NMR Order Parameters for Lipid Bilayer Structure Determination. Biophys. J. 76, (1999). 126 NAGLE, J. F., H. I. Petrache, N. Gouliaev, S. Tristram-Nagle, Y. Liu, R. M. Suter and K. Gawrisch, Multiple Mechanisms for Critical Behavior in the Biologically Relevant Phase of Lecithin Bilayers. Phys. Rev. E. 58, (1998). 125 Petrache, H. I., S. Tristram-Nagle and J. F. NAGLE, Fluid Phase Structure of EPC and DMPC Bilayers. Chem. Phys. Lipids 95, (1998). 124 Gouliaev, N. and J. F. Nagle, Simulations of Interacting Membranes in the Soft Confinement Regime, Phys. Rev. Lett. 81, (1998). 123 Tristram-Nagle, S., H. I. Petrache and J. F. NAGLE, Structure and Interactions of Fully Hydrated Dioleoylphosphatidylcholine Bilayers. Biophys. J. 75, (1998). 122 Gouliaev, N. and J. F. NAGLE, Simulations of a Membrane Between Two Walls, Phys. Rev. E 58, (1998). 121 NAGLE, J. F., S. Tristram-Nagle, H. Takahashi and I. Hatta, Comment on Growth of Molecular Superlattice in Fully Hydrated DPPC during Subgel Phase Formation, European Physical Journal B 1, (1998). 120 Petrache, H. I., N. Gouliaev, S. Tristram-Nagle, R. Zhang, R. M. Suter, J. F. NAGLE, Interbilayer Interactions: High Resolution X-ray Study, Phys. Rev. E. 57, (1998).

3 3 119 Tristram-Nagle, S., H. Petrache, R. M. Suter and J. F. NAGLE, Effect of Substrate Roughness on D Spacing Supports Theoretical Resolution of Vapor Pressure Paradox. Biophys. J. 74, (1998). 118 NAGLE, J. F., Critical Role of Fluctuations in Lipid Bilayers. In Phase Transitions in Complex Fluids, (World Scientific, 1998) Eds. P. Toledano and A. M. Figueriredo Neto. Pages Tristram-Nagle, S., T. Moore, H. Petrache and J. F. NAGLE, DMSO Produces a New Subgel Phase in DPPC: DSC and X-Ray Diffraction Study. Biochim. Biophys. Acta 1369, (1998). 116 Petrache, H. I., S. E. Feller and J. F. NAGLE, Determination of Component Volumes of Lipid Bilayers from Simulations. Biophys. J. 72, (1997). 115 NAGLE, J. F., in The Collected Works of Lars Onsager, ed. P.C. Hemmer et al pages (World Scientific, Singapore, 1996). Commentaries on pp and Sun, W.-J., S. Tristram-Nagle, R. M. Suter and J. F. NAGLE, Structure of Gel Phase Saturated Lecithin Bilayers: Temperature and Chain Length Dependence. Biophys. J. 71, (1996). 113 Sun, W.-J., S. Tristram-Nagle, R.M. Suter and J. F. NAGLE, Structure of the Ripple Phase in Lecithin Bilayers. Proc. Natl. Acad. Sci. USA 93, (1996). 112 NAGLE, J. F., R. Zhang, S. Tristram-Nagle, W. Sun, H. Petrache and R. M. Suter, X-ray Structure Determination of L α Phase DPPC Bilayers. Biophys. J. 70, (1996). 111 Zhang, R., S. Tristram-Nagle, W. Sun, R. L. Headrick, T. C. Irving, R. M. Suter and J. F. NAGLE, Small Angle X-ray Scattering From Lipid Bilayers Is Well Described By Modified Caille Theory, But Not By Paracrystalline Theory, Biophys. J. 70, (1996). 110 W. Sun, S. Tristram-Nagle, R. M. Suter and J. F. NAGLE, Anomalous Phase Behavior of Long Chain Saturated Lecithin Bilayers, Biochim. Biophys. Acta 1279, (1996). 109 Suter, R. M., R. Zhang, W. Sun, S. Tristram-Nagle and J. F. NAGLE, High Resolution Studies of Lipid Bilayers, CHESS Newsletter (1995). 108 NAGLE, J. F., Comment on Orientational Dependence of 2 H-NMR Spin Lattice Relaxation in Phospholipid Systems, J. Chem. Phys. 103, (1995). 107 R. Zhang, W. Sun, S. Tristram-Nagle, R. Headrick, R. M. Suter and J. F. NAGLE, Critical Fluctuations in Membranes. Phys. Rev. Letts. 74, (1995). 106 NAGLE, J. F., L. Zimanyi and J. K. Lanyi, Testing BR Photocycle Kinetics. Biophys. J. 68, (1995). 105 R. Zhang, R. M. Suter and J. F. NAGLE, Theory of the Structure Factor of Lipid Bilayers. Phys. Rev. E 50, (1994). 104 NAGLE, J. F., Onsager, Ice, Biomembranes, Dimer Models and the F-model. J. Stat. Phys. 78, 549 (1995). 103 Sun, W.-J., R. M. Suter, M. A. Knewtson, C. R. Worthington, S. Tristram-Nagle,

4 4 R. Zhang and J. F. Nagle, Order and Disorder in Fully Hydrated Unoriented Bilayers of Gel Phase DPPC. Phys. Rev. E 49, 4665 (1994). 102 Tristram-Nagle, S., R. M. Suter, W.-J. Sun, and J. F. NAGLE, Kinetics of Subgel Formation in DPPC: X-Ray Diffraction Proves Nucleation-Growth Hypothesis. Biochim. Biophys. Acta, 1191, 14 (1994). 101 NAGLE, J. F., Area/Lipid of Bilayers from NMR, Biophys. J. 64, 1476 (1993). 100 NAGLE, J. F., Evidence for Partial Rotational Order in Gel Phase DPPC, Biophys. J. 64, (1993). 99 Tristram-Nagle, S., R. Zhang, R. M. Suter, C. R. Worthington, W.-J. Sun and J. F. NAGLE, Measurement of Chain Tilt Angle in Fully Hydrated Bilayers of Gel Phase Lecithins, Biophys. J. 64, (1993). 98 NAGLE, J. F., Long-Tail Kinetics in Biophysics?, Biophys. J. 63, 366 (1992). 97 NAGLE, J. F., Proton Transport in Condensed Matter, in proceedings of NATO Workshop, "Proton Transfer in Hydrogen-Bonded Systems", ed. T. Bountis (Plenum Press, New York, 1992), pp Yokoi, C. S. O. and J. F. NAGLE, Exact Solution of 4-8/4/1 Dimer Model with OK Multicritical Point, J. Phys. A25, 543 (1992). 95 NAGLE, J. F., Photocycle Kinetics: Analysis of Raman Data from Bacteriorhodopsin. Photochemistry and Photobiology 54, 897 (1991). 94 NAGLE, J. F., Solving Complex Photocycle Kinetics: Theory and Direct Method, Biophys. J. 59, 476 (1991). 93 NAGLE, J. F. and C. S. O. Yokoi, Exact Solutions for a Variety of Dimer Models. Invited paper for the Proceedings of StatPhys 17. Physica A163, 140 (1990). 92 NAGLE, J. F., C. S. O. Yokoi and S. M. Bhattachrajee, Dimer Models on Anisotropic Lattices. In "Phase Transitions and Critical Phenomena", pp , Vol 13. Ed. C. Domb and J. L. Lebowitz. (Academic Press, London, 1989). 91 Wiener, M. C., R. M. Suter and J. F. NAGLE, Structure of the Fully Hydrated Gel Phase of DPPC. Biophys. J. 55, 315 (1989). 90 NAGLE, J. F. and M. C. Wiener, Relations for Lipid Bilayers: Connection of Electron Density Profiles To Other Structural Quantities. Biophys. J. 55, 309 (1989). 89 Yang, C. P., M. C. Wiener and J. F. NAGLE, New Phases of DPPC/Water Mixtures. Biochim. Biophys. Acta 945, 101 (1988). 88 Yang, C. P. and J. F. NAGLE, Phase Transformations in Lipids Follow Classical Kinetics with Small Fractional Dimensionalities. Physical Review A 37, 3993 (1988). 87 NAGLE, J. F. and M. C. Wiener, Structure of Fully Hydrated Bilayer Dispersions. Biochim. Biophys. Acta 942, 1 (1988). 86 Wiener, M. C., S. Tristram-Nagle, D. A. Wilkinson, L. E. Campbell and J. F. NAGLE, Specific Volumes of Lipids in Fully Hydrated Bilayer Dispersions. Biochim. Biophys. Acta 938, 135 (1988).

5 5 85 Tristram-Nagle, S., M. C. Wiener, C.-P. Yang and J. F. NAGLE, Kinetics of the Subtransition in Dipalmitoylphosphatidylcholine Dispersions. Biochemistry 26, 4288 (1987). 84 NAGLE, J. F., Theory of Passive Proton Conductance in Lipid Bilayers. Invited mini-review for J. Bioenergetics and Biomembranes 19, 413 (1987). 83 NAGLE, J. F. and C. S. O. Yokoi, Exact Solution to a New Anisotropic Dimer Model with Domain Wall Behavior. Phys. Rev. B35, 5307 (1987). 82 Xie, A. H., J. F. NAGLE and R. H. Lozier, Flash Spectroscopy of Purple Membrane. Biophys. J. 51, 627 (1987). 81 Yang, C. P., M. C. Wiener, R. N. A. H. Lewis, R. N. McElhaney and J. F. NAGLE, Dilatometric Studies of Isobranched Lecithins. Biochim. Biophys. Acta 863, 33 (1986). 80 Yokoi, C. S. O., J. F. NAGLE and S. R. Salinas, Dimer Pair Correlations on the Brick Lattice. J. Stat. Phys. 44, 729 (1986). 79 NAGLE, J. F., Theory of Lipid Monolayer and Bilayer Chain Melting Phase Transitions. Faraday Discussion Chem. Soc. 81, 151 (1986). 78 NAGLE, J. F., Propaedeutics of Ionic Transport Across Biomembranes in "Ion Transport Through Membranes" (Academic Press, Tokyo) Eds. K. Yagi and B. Pullman, pp NAGLE, J. F. and R. A. Dilley, Models of Localized Energy Coupling. J. Bioenergetics and Biomembranes 18, 55 (1986). 76 Tristram-Nagle, S., C.-P. Yang and J. F. NAGLE, Thermodynamic Studies of Purple Membrane. Biochim. Biophys. Acta 854, 58 (1986). 75 NAGLE, J. F. and M. Goldstein, Decomposition of Entropy and Enthalpy for the Melting Transition of Polyethylene. Macromolecules 18, 2643 (1985). 74 Bhattacharjee, S. M. and J. F. NAGLE, Finite Size Effect for the Critical Point of an Anisotropic Dimer Model of Domain Walls. Phys. Rev. A 31, 3199 (1985). 73 NAGLE, J. F., Proof of Gridlock in a Polymer Model. J. Stat. Phys. 38, 531 (1985). 72 NAGLE J. F., Confinement in Vertex Models, J. Phys. A 18, L181 (1985). 71 NAGLE, J. F. and S. Tristram-Nagle, Elements of Proton Pump Models, in Information and Energy Transduction in Biological Membranes, eds. C. L. Bolis, E. J. M. Helmreich (A. R. Liss, Inc., New York, 1984), pp NAGLE, J. F., P. Gujrati and M. Goldstein. Towards Better Theories of Polymer Melting. Invited "Feature Article" for J. Phys. Chem. 88, 4599 (1984). 69 Parodi, L. A., R. H. Lozier, S. Bhattacharjee and J. F. NAGLE, Testing Kinetic Models for the Bacteriorhodopsin Photocycle - II. Inclusion of an O to M Backreaction, Photochem. Photobiol. 40, 501 (1984). 68 Wilkinson, D. A. and J. F. NAGLE, Metastability and the Subtransition in Phosphatidylethanolamine Bilayers, Biochem. 23, 1538 (1984).

6 6 67 Scheiner, S. and J. F. NAGLE, Ab Initio Molecular Orbital Estimates of Charge Partitioning Between Bjerrum and Ionic Defects in Ice, J. Phys. Chem. 87, 4267 (1983). 66 NAGLE, J. F., Relevance of Ice Studies to Bioenergetics, J. Phys. Chem. 87, 4086 (1983). 65 NAGLE, J. F., Upon the Incorporation of the High Frequency Dielectric Constant Into the Kirkwood Dielectric Equation Applied to Ice, J. Phys. Chem. 87, 4015 (1983). 64 NAGLE, J. F., S. M. Bhattacharjee, R. H. Lozier and L. A. Parodi, Effect of Photoselection Upon Saturation and the Dichroic Ratio in Flash Experiments of Effectively Immobilized Systems, Photochem. Photobiol. 38, (1983). 63 Bhattacharjee, S. M., J. F. NAGLE, D.A. Huse and M. E. Fisher, Critical Behavior of a Three-Dimensional Dimer Model, J. Stat. Phys. 32, 361 (1983)

7 7 Following is a partial list of earlier papers: 62 NAGLE, J. F. and S. Tristram-Nagle, Hydrogen Bonded Chain Mechanisms for Proton Conduction and Proton Pumping, Invited review for J. Membrane Biol. 74, 1 (1983). 61 McMullan, R. K., R. Thomas and J. F. NAGLE, Structures of the Paraelectric and Ferroelectric Phases of NaD 3 (SeO 3 ) 2 by Neutron Diffraction, J. Chem. Phys. 77, 537 (1982). 60 NAGLE, J. F. and D. A. Wilkinson, Dilatometric Studies of the Subtransition in DPPC, Biochem. 21, 3817 (1982). 58 Wilkinson, D. A. and J. F. NAGLE, Specific Heats of Lipid Dispersions in Single Phase Regions, Biochim. Biophys. Acta 688, 107 (1982). 57 NAGLE, J. F., R. H. Lozier and L. A. Parodi, Procedure for Testing Kinetic Models of the Photocycle of Bacteriorhodopsin, Biophys. J. 38, 161 (1982). 56 Wilkinson, D. A. and J. F. NAGLE, Thermodynamics of Lipid Bilayers, in Liposomes: From Physical Structure to Therapeutic Application, ed. C. G. Knight. Chapter 9, pp (1981). 55 NAGLE, J. F., Upon the Optimal Graphical Representation of Flash Data from Photochemical Systems Obeying First Order Kinetics, Photochem. Photobiol. 33, 937 (1981). 54 NAGLE, J. F. and M. Mille, Models of Proton Pumps, J. Chem. Phys. 74, 1367 (1981). 51 NAGLE, J. F., Theory of the Main Lipid Bilayer Phase Transition, Ann. Rev. Phys. Chem. 31, 157 (1980). 50 NAGLE, J. F., M. Mille and H. J. Morowitz, Theory of Hydrogen Bonded Chains in Bioenergetics, J. Chem. Phys. 72, 3959 (1980). 49 Borkowski, L., J. Stecki and J. F. NAGLE, Nematic Ordering in Monomer- Dimer System with Attractive Interactions on a Square Lattice, Mol. Phys. 40, 333 (1980). 47 NAGLE, J. F., Theory of the Dielectric Constant of Ice, Chem. Phys. 43, 317 (1979). 45 NAGLE, J. F. and H. L. Scott, Lateral Compressibility of Lipid Mono- and Bilayers: Theory of Membrane Permeability, Biochim. Biophys. Acta 513, 236 (1978). 44 NAGLE, J. F. and D. A. Wilkinson, Lecithin Bilayers: Density Measurements and Molecular Interactions, Biophys. J. 23, 159 (1978). 43 NAGLE, J. F. and H. L. Scott, Biomembrane Phase Transitions, Physics Today, Vol. 31, No. 2, p38, Feb Reprinted in Biological Physics, ed. E. V. Mielczarek et al., in Key Papers in Physics Series (American Institute of Physics, New York) 1993, pp NAGLE, J. F. and H. J. Morowitz, Molecular Mechanisms for Proton Transport in Membranes, Proc. Natl. Acad. Sci. (USA) 75, 298 (1978).

8 8 37 NAGLE, J. F. and J. C. Bonner, Phase Transitions: Beyond the Simple Ising Model, Ann. Rev. Phys. Chem. 27, 291 (1976). 36 NAGLE, J. F., Theory of Lipid Monolayer and Bilayer Phase Transitions: Effect of Headgroup Interactions, J. Membrane Biol. 27, 233 (1976). 33 NAGLE, J. F., Chain Model Theory of Lipid Monolayer Transitions, J. Chem. Phys. 63, 1255 (1975). 32 NAGLE, J. F., Critical Points for Dimer Models with 3/2 Order Transitions, Phys. Rev. Lett. 34, 1150 (1975). 27 Salinas, S. R. and J. F. NAGLE, Theory of the Order-Disorder Transition in the Layered Hydrogen Bonded Crystal SnCl 2 2H 2 O, Phys. Rev. B9, 4920 (1974). 26 NAGLE, J. F., Statistical Mechanics of the Melting Transition in Lattice Models of Polymers, Proc. Roy. Soc. Lond. A337, 569 (1974). 25 Chen, M. S., L. Onsager, J. C. Bonner and J. F. NAGLE, Hopping of Ions in Ice, J. Chem. Phys. 60, 405 (1974). 23 NAGLE, J. F., Lipid Bilayer Phase Transition: Dilatometry and Theory, Proc. Natl. Acad. Sci. (USA) 70, 3443 (1973). 21 NAGLE, J. F., Series Expansions, Weak Graph Method and Ferroelectric Models, in Phase Transitions and Critical Phenomena, Vol. 3, eds. C. Domb and M. S. Green, (Academic Press, London, 1973). 20 NAGLE, J. F., Theory of Biomembrane Phase Transitions, J. Chem. Phys. 58, 252 (1973). 18 NAGLE, J. F., J. C. Bonner and M. F. Thorpe, Cycle Free Approximations to Amorphous Semi-Conductors, Phys. Rev. B4, 2233 (1972). 16 NAGLE, J. F., A New Subgraph Expansion for Obtaining Coloring Polynomials for Graphs, J. Combinatorial Theory 10, 42 (1971). 14 NAGLE, J. F. and J. C. Bonner, Ising Chain with Competing Interactions in a Staggered Field, J. Chem. Phys. 54, 729 (1971). 12 NAGLE, J. F. and J. C. Bonner, Numerical Studies of the Ising Chain with Long Range Ferromagnetic Interactions, J. Phys. C3, 352 (1970). 11 NAGLE, J. F., Exact Configurational Entropy of Copper Formate Tetrahydrate Model, Phys. Rev. 186, 594 (1969). 10 NAGLE, J. F., Proof of the First Order Phase Transition in the Slater KDP Model, Commun. Math. Phys. 13, 62 (1969). 7 NAGLE, J. F. and H. N. V. Temperley, Combinatorial Theorem for Graphs on a Lattice, J. Math. Phys. 9, 1020 (1968). 3 NAGLE, J. F., On Ordering and Identifying Undirected Linear Graphs, J. Math. Phys. 7, 1588 (1966). 1,2 NAGLE, J. F., Lattice Statistics of Hydrogen Bonded Crystals I and II., J. Math. Phys. 7, 1484 and 1492 (1966).