Supplementary Material and Methods

Similar documents
HEK293FT cells were transiently transfected with reporters, N3-ICD construct and

TFEB-mediated increase in peripheral lysosomes regulates. Store Operated Calcium Entry

Electron micrograph of phosphotungstanic acid-stained exosomes derived from murine

Nature Immunology: doi: /ni.3631

EPI TIR-FM min

SUPPLEMENTARY INFORMATION

- 1 - Cell types Monocytes THP-1 cells Macrophages. LPS Treatment time (Hour) IL-6 level (pg/ml)

(a) Significant biological processes (upper panel) and disease biomarkers (lower panel)

genome edited transient transfection, CMV promoter

Human SH-SY5Y neuroblastoma cells (A.T.C.C., Manassas, VA) were cultured in DMEM, F-12

Stewart et al. CD36 ligands promote sterile inflammation through assembly of a TLR 4 and 6 heterodimer

SUPPLEMENTARY INFORMATION

LPS LPS P6 - + Supplementary Fig. 1.

Supplementary Fig. 1. GPRC5A post-transcriptionally down-regulates EGFR expression. (a) Plot of the changes in steady state mrna levels versus

SUPPLEMENTARY FIGURES AND TABLES

SUPPLEMENTARY INFORMATION

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

Single Particle Tracking of Human Immunodeficiency Virus Type 1 Productive Entry into Human Primary Macrophages

Title: Vectorization of biomacromolecules into cells using extracellular vesicles with enhanced internalization induced by macropinocytosis

Supplementary Material

SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods

RAW264.7 cells stably expressing control shrna (Con) or GSK3b-specific shrna (sh-

SUPPLEMENTARY INFORMATION

Supplemental Figure 1 ELISA scheme to measure plasma total, mature and furin-cleaved

Supplementary Information

SUPPLEMENTAL FIGURE LEGENDS

HCC1937 is the HCC1937-pcDNA3 cell line, which was derived from a breast cancer with a mutation

Figure S1. Western blot analysis of clathrin RNA interference in human DCs Human immature DCs were transfected with 100 nm Clathrin SMARTpool or

T H E J O U R N A L O F C E L L B I O L O G Y

Bioluminescence Resonance Energy Transfer (BRET)-based studies of receptor dynamics in living cells with Berthold s Mithras

Supplementary Information

Supplementary Figure S I: Effects of D4F on body weight and serum lipids in apoe -/- mice.

SUPPLEMENTARY INFORMATION

Measurement of diastolic and systolic calcium concentration assessed by Fura-2 dye

T H E J O U R N A L O F C E L L B I O L O G Y

S1a S1b S1c. S1d. S1f S1g S1h SUPPLEMENTARY FIGURE 1. - si sc Il17rd Il17ra bp. rig/s IL-17RD (ng) -100 IL-17RD

Intracellular MHC class II molecules promote TLR-triggered innate. immune responses by maintaining Btk activation

Supplementary Figure 1.

Supplemental Information. Autophagy in Oncogenic K-Ras. Promotes Basal Extrusion. of Epithelial Cells by Degrading S1P. Current Biology, Volume 24

Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk

Supplementary Information for. Shi and King, Chromosome Nondisjunction Yields Tetraploid Rather than Aneuploid Cells in Human Cell Lines.

F-actin VWF Vinculin. F-actin. Vinculin VWF

Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6.

293T cells were transfected with indicated expression vectors and the whole-cell extracts were subjected

SUPPLEMENTARY INFORMATION

SUPPLEMENTAL MATERIAL. Supplementary Methods

Supplemental information

Xenoestrogen-induced Regulation of EZH2 and Histone Methylation via Non-Genomic Estrogen

Supplementary Methods

Supplementary data Supplementary Figure 1 Supplementary Figure 2

Supplementary Figure 1 CD4 + T cells from PKC-θ null mice are defective in NF-κB activation during T cell receptor signaling. CD4 + T cells were

Nature Immunology: doi: /ni.3866

A Hepatocyte Growth Factor Receptor (Met) Insulin Receptor hybrid governs hepatic glucose metabolism SUPPLEMENTARY FIGURES, LEGENDS AND METHODS

MELANOMA CANCER TEST

Doctoral Degree Program in Marine Biotechnology, College of Marine Sciences, Doctoral Degree Program in Marine Biotechnology, Academia Sinica, Taipei,

Fig. S1. High K+ increases intracellular calcium level.

Supplementary material. Supplementary Figure legends

Supplementary Figure 1

A genetically targeted optical sensor to monitor calcium signals in astrocyte processes

Supplemental Material:

SUPPLEMENTARY INFORMATION

Supplementary Figure S1. Venn diagram analysis of mrna microarray data and mirna target analysis. (a) Western blot analysis of T lymphoblasts (CLS)

Supplementary Materials for

SUPPLEMENT. Materials and methods

William C. Comb, Jessica E. Hutti, Patricia Cogswell, Lewis C. Cantley, and Albert S. Baldwin

The rabbit femoral artery was prepared and each arterial ring was permeabilized

a surface permeabilized

Influenza virus exploits tunneling nanotubes for cell-to-cell spread

3. Results. 3.1 Elevated osmolality is required for the DBcAMP-elicited expression of robust AQP2 protein levels in IMCD cells

Bhatnagar et al, 2010 Cell Death and Disease Manuscript # CDDIS T

Supplementary Materials for

SUPPLEMENTARY INFORMATION

Chapter 3. Expression of α5-megfp in Mouse Cortical Neurons. on the β subunit. Signal sequences in the M3-M4 loop of β nachrs bind protein factors to

SUPPLEMENTARY INFORMATION

Identification of GLP1R agonists using a novel high throughput screening assay Wan Namkung, Ph.D.

Supplemental information contains 7 movies and 4 supplemental Figures

Supplementary Figures

Appendix. Table of Contents

Supplemental Figure 1. (A) Western blot for the expression of RIPK1 in HK-2 cells treated with or without LPS (1 µg/ml) for indicated times.

Aspergillus fumigatus activates PAR-2 and skews toward a Th2 bias in airway epithelial cells.

T H E J O U R N A L O F C E L L B I O L O G Y

Supplementary Information

SUPPLEMENTARY INFORMATION

Supplementary Information. Cryptochrome Mediates Circadian Regulation of camp. Signalling and Hepatic Gluconeogenesis

Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v)

Effect of Rhodamine-taxol conjugate on Caveolin dynamics

Type of file: PDF Title of file for HTML: Supplementary Information Description: Supplementary Figures

Supplementary Figure 1. Supernatants electrophoresis from CD14+ and dendritic cells. Supernatants were resolved by SDS-PAGE and stained with

GFP-LC3 +/+ CLU -/- kda CLU GFP. Actin. GFP-LC3 +/+ CLU -/- kda CLU GFP. Actin

Supplementary Figure S1 Supplementary Figure S2

Nature Immunology: doi: /ni Supplementary Figure 1. IC261 inhibits a virus-induced type I interferon response.

Nature Biotechnology: doi: /nbt.3828

Supplementary information

Supplementary Figure 1. PD-L1 is glycosylated in cancer cells. (a) Western blot analysis of PD-L1 in breast cancer cells. (b) Western blot analysis

A. Generation and characterization of Ras-expressing autophagycompetent

LDL Uptake Cell-Based Assay Kit

Sestrin2 and BNIP3 (Bcl-2/adenovirus E1B 19kDa-interacting. protein3) regulate autophagy and mitophagy in renal tubular cells in. acute kidney injury

Human TRPC6 Ion Channel Cell Line

Supplementary Information

Supplementary Figure 1 Role of Raf-1 in TLR2-Dectin-1-mediated cytokine expression

Transcription:

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 1 Supplementary Material and Methods Cloning of ApoE-GFP Full-length human apoe3 cdna (pcdna3.1/zeo + -apoe) was kindly provided by Mary LaDu (Evanston Northwestern Healthcare Research Institute, USA). An apoegfp construct was generated in house (T.Sabaretnam) by removing the stop codon on the apoe cdna and tagging the C-terminus of the complete human apoe gene to the N- terminus of pegfp-n1 (BD Clontech), in frame. The apoe coding region was amplified by PCR to incorporate a 5`-EcoR1 site and 3`-BamH1 site using specific primers 5 - ACGAATTCATGAAGGTTCTGTGGGCTGC-3 and 5 - GTGGATCCGCGTGATTGTCGCTGGGCAC-3, respectively (Proligo, NSW, Australia), and a purified apoe product was ligated into EcoR1 and BamH1 sites of the poly linker region of the pegfp-n1 vector using T4-ligase (Invitrogen), obtaining a apoe-gfp with a C-terminal GFP tag. Generation of stable CHO-apoE and CHO-apoE-EGFP transfectants CHO-K1 (ATCC, Manassas) were transfected with pcdna3.1/zeo + -apoe or pegfpapoe using lipofectamine (Invitrogen) according to the manufactures instructions. CHO- K1 cells stably expressing apoe or apoe-egfp were selected using zeocin (Invitrogen) or geneticin (Invitrogen), respectively. Live Cell Imaging. Transiently transfected cells were cultured on 25-mm coverslips incubated in CO2- independent media on a stage-mounted heating block warmed to 37 C on an Olympus IX71 inverted microscope equipped with an Olympus 100 X oil objective lens. Images were captured with an IMAGO Super VGA 12 bit 1280 X 1024 pixel CCD camera 1

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 2 (T.I.L.L. Photonics, Germany). Movie frame capture rate was 0.5 seconds, with total capture periods ranging from 5 to 30 minutes after addition of H89. Movies were cropped, constructed and analysed using Image J v1.35 and Volocity v3.6. Movies were exported as Quicktime movies with a playback speed of 20 frames per second. PKA Activity Assay PKA activity was measured using SignaTECT camp-dependent protein kinase assay system (Promega) according to manufacturer s instructions with minor modifications. PKA specific phosphorylation was assessed performing a duplicate reaction in the presence of a PKA inhibitory peptide (Promega). PKA-specific activity was calculated by subtracting kinase activity in the presence of the inhibitor from total kinase activity 1. Calcium Measurement by Fluorescence Microscopy Calcium measurements were performed with the Olympus Cell R system using an Olympus IX81 microscope equipped for fluorescence and MT20 light source. Cholesterol-loaded macrophages grown on slide dishes (MatTek) were placed in Hank s balanced salts solution (HBSS) without phenol red (Invitrogen) and loaded with 5µM fura-2-am for 30 minutes at 37 C. Cells were equilibrated in HBSS and fluorescence at 510 nm was recorded after excitation at 340 nm and 380 nm. The change in [Ca 2+ ] i was expressed as the fluorescence ratio at 340/380nm and normalized to the baseline ratio recorded during the first minute 2. 2

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 3 Supplementary Legends Supplementary Figure 1: Secretion of ApoE-GFP is comparable to that of wild type apoe. CHO-K1 cells stably expressing apoe or apoe-gfp secrete similar amounts of apoe in 4 hours (A). Stable transfectants were incubated with 20µmol/L H89 for 2 hours (B) or 25µg/ml apoa-i for 6 hours (C). -GFP and apoe are shown by Western blot and quantified by ELISA for apoe and by Western blot analyis for apoe-gfp as described under Materials and Methods. st; human apoe standard *p < 0.05 relative to control. Supplementary Movie 1 and 2: H89 abolishes trafficking of apoe containing vesicles Live cell imaging of RAW264.7 cells expressing apoe-gfp in the absence (Movie 1) and presence (Movie 2) of 40µmol/L H89. Frames were captured at 0.5 second intervals with total capture periods ranging from 5 to 30 minutes after addition of H89. Supplementary Figure 2: PKA activation does not increase apoe secretion Human macrophages were incubated with 50µmol/L Forskolin in the presence of 75µmol/L IBMX or with 25µg/mL apoa-i. After 10 minutes secreted apoe (A) and PKA activity (B) were determined. *, p < 0.05 relative to control. Supplementary Figure 3: ApoA-I does not trigger release of intracellular Ca 2+. (A) Cells were loaded with fura-2-am and [Ca 2+ ] i levels were recorded as described under Materials and Methods. ApoA-I was added at 1 minute to a final concentration of 3

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 4 25µg/ml, control cells received a similar volume of saline (Ctrl). At 6 minutes ATP was added to a final concentration of 100µmol/L. Values are mean ± SEM of 9 and 10 cells for Ctrl and apoa-i, respectively. Data shown is a representative of n=3 independent experiments performed in duplicate. (B) Effect of agents stimulating [Ca 2+ ] i on apoe secretion. Human macrophages were incubated with 100µmol/L ATP, 1µmol/L thapsigargin or1µmol/l A23187 for 30 minutes. was determined by ELISA as described under Materials and Methods. from control cells was set at 100%. *, p < 0.05 relative to control. 4

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 5 Supplementary Table 1: Effect of H89, Colchicine and BAPTA-AM on total and specific protein secretion - Ctrl H89 Colchicine BAPTA-AM Total protein secreted 1 cpm/µg cell protein 8799.2 ± 1586.2 3776.3 ± 225.7 * 6891.5 ± 1456.6 * 3096.7 ± 250.9 * % of control 100.0 ± 18.0 42.9 ± 2.6 * 78.3 ± 16.5 * 35.2 ± 2.9 * ApoE 2 cpm/µg cell protein 387.2 ± 24.3 160.0 ± 4.6 * 289.9 ± 12.6 * 131.3 ± 4.8 * % of control 100.0 ± 6.3 41.3 ± 1.2 * 74.9 ± 3.2 * 33.9 ± 3.8 * Lysozyme 3 AU/µg cell protein 82.9 ± 9.2 31.3 ± 1.5 * 52.7 ± 5.1 * 38.3 ± 6.0 * % of control 100.0 ± 11.1 37.7 ± 1.8 * 63.6 ± 6.1 * 46.1 ± 7.3 * Human macrophages were incubated in methionine/cysteine free DMEM with 250µCi/mL [ 35 S]methionine/cysteine for 3 h. Cells were then washed and chased in medium without or with 40µmol/L colchicine, 40µmol/L H89 or 100µmol/L BAPTA-AM for 1 h. 1 Total [ 35 S]-labeled protein was determined by TCA precipitation, with T=0 being 391528.4 ± 42510.9 cpm/µg cell protein. 2 [ 35 S]-ApoE was determined by immunoprecipitation using apoe antibodies 3 lysozyme was measured using Western Blotting analysis *p < 0.05 relative to control 5

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 6 Supplementary Table 2: Inhibition of apoe secretion by H89 and colchicine is reversible Inhibitor (min pre-incubation / min chase) (% of control) 30/0 (% of control) 30/30 (% of control) 30/120 H89 + / - 57.1 ± 6.9 49.7 ± 6.2 70.8 ± 8.9 + /+ 57.1 ± 6.9 19.3 ± 1.5 9.9 ± 0.7 Colchicine + / - 57.6 ± 4.7 59.4 ± 5.4 73.8 ± 2.9 + /+ 57.6 ± 4.7 61.7 ± 2.6 48.3 ± 1.4 BAPTA-AM + / - 46.6 ± 4.1 45.1 ± 4.1 49.3 ± 6.6 + /+ 46.6 ± 4.1 12.3 ± 0.4 4.5 ± 1.4 Human macrophages were incubated with control medium, 40µmol/L H89, 40µmol/L colchicine or 100µmol/L Bapta-AM for 30 minutes, washed and chased in control medium or the same concentration of inhibitor for the time indicated. *p < 0.05 relative to control 6

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 7 Supplementary Movies Movie 1 Movie 2 See additional movie file 1 see additional movie file 2 7

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 8 Supplementary Figure 1 A 64 kda 38 kda B 25 12 6 3 ng st apoe-gfp C apoe 120 (%) 80 400 (%) 300 * * 40 * * 200 100 0 Ctrl H89 Ctrl H89 0 Ctrl apoa-i Ctrl apoa-i apoe-gfp apoe apoe-gfp apoe 8

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 9 Supplementary Figure 2 A B 1.2 PKA activity (pmol/min/ 0.9 µg cell protein * 2000 (ng/mg cell 1500 protein) * 0.6 1000 0.3 500 0.0 Ctrl Fors apoa-i 0 Ctrl Fors apoa-i 9

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 10 Supplementary Figure 3 A [Ca 2+ ]i 2 Ratio 340/380 apoa-i/ saline ATP B 120 (%) 80 1 40 0 0 2 4 6 8 10 Time (min) 0 Ctrl ATP ThapsA2317 10

Online Supplement Kockx et al, Secretion of Apolipoprotein E from Macrophages 11 Supplementary References 1. Graves LM, Bornfeldt KE, Raines EW, Potts BC, Macdonald SG, Ross R, Krebs EG. Protein kinase A antagonizes platelet-derived growth factor-induced signaling by mitogen-activated protein kinase in human arterial smooth muscle cells. Proc Natl Acad Sci U S A. 1993;90:10300-10304. 2. Bishara NB, Murphy TV, Hill MA. Capacitative Ca(2+) entry in vascular endothelial cells is mediated via pathways sensitive to 2 aminoethoxydiphenyl borate and xestospongin C. Br J Pharmacol. 2002;135:119-128. 11