Received 8 September 1997/Accepted 5 December 1997

Size: px
Start display at page:

Download "Received 8 September 1997/Accepted 5 December 1997"

Transcription

1 JOURNAL OF VIROLOGY, Mar. 1998, p Vol. 72, No X/98/$ Copyright 1998, American Society for Microbiology The Cell Tropism of Human Immunodeficiency Virus Type 1 Determines the Kinetics of Plasma Viremia in SCID Mice Reconstituted with Human Peripheral Blood Leukocytes GASTÓN R. PICCHIO, 1 RICHARD J. GULIZIA, 1 KATHY WEHRLY, 2 BRUCE CHESEBRO, 2 AND DONALD E. MOSIER 1 * Department of Immunology-IMM7, The Scripps Research Institute, La Jolla, California 92037, 1 and Laboratory of Persistent Viral Diseases, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, Hamilton, Montana Received 8 September 1997/Accepted 5 December 1997 Most individuals infected with human immunodeficiency virus type 1 (HIV-1) initially harbor macrophagetropic, non-syncytium-inducing (M-tropic, NSI) viruses that may evolve into T-cell-tropic, syncytium-inducing viruses (T-tropic, SI) after several years. The reasons for the more efficient transmission of M-tropic, NSI viruses and the slow evolution of T-tropic, SI viruses remain unclear, although they may be linked to expression of appropriate chemokine coreceptors for virus entry. We have examined plasma viral RNA levels and the extent of CD4 T-cell depletion in SCID mice reconstituted with human peripheral blood leukocytes following infection with M-tropic, dual-tropic, or T-tropic HIV-1 isolates. The cell tropism was found to determine the course of viremia, with M-tropic viruses producing sustained high viral RNA levels and sparing some CD4 T cells, dual-tropic viruses producing a transient and lower viral RNA spike and extremely rapid depletion of CD4 T cells, and T-tropic viruses causing similarly lower viral RNA levels and rapid-intermediate rates of CD4 T-cell depletion. A single amino acid change in the V3 region of gp120 was sufficient to cause one isolate to switch from M-tropic to dual-tropic and acquire the ability to rapidly deplete all CD4 T cells. * Corresponding author. Mailing address: Department of Immunology, IMM7, The Scripps Research Institute, N. Torrey Pines Rd., La Jolla, CA Phone: (619) Fax: (619) dmosier@scripps.edu. Publication IMM from The Scripps Research Institute. The envelope gene of human immunodeficiency virus type 1 (HIV-1) determines the cell tropism of the virus (11, 32, 47, 62), the use of chemokine receptors as cofactors for viral entry (4, 17), and the ability of the virus to induce syncytia in infected cells (55, 60). Cell tropism is closely linked to but probably not exclusively determined by the ability of different HIV-1 envelopes to bind CD4 and the CC or the CXC chemokine receptors and initiate viral fusion with the target cell. Macrophage-tropic (M-tropic) viruses infect primary cultures of macrophages and CD4 T cells and use CCR5 as the preferred coreceptor (2, 5, 15, 23, 26, 31). T-cell-tropic (T-tropic) viruses can infect primary cultures of CD4 T cells and established T-cell lines, but not primary macrophages. T-tropic viruses use CXCR4 as a coreceptor for viral entry (27). Dual-tropic viruses have both of these properties and can use either CCR5 or CXCR4 (and infrequently other chemokine receptors [25]) for viral entry (24, 37, 57). M-tropic viruses are most frequently transmitted during primary infection of humans and persist throughout the duration of the infection (63). Many, but not all, infected individuals show an evolution of virus cell tropism from M-tropic to dual-tropic and finally to T-tropic with increasing time after infection (21, 38, 57). Increases in replicative capacity of viruses from patients with long-term infection have also been noted (22), and the switch to the syncytiuminducing (SI) phenotype in T-tropic or dual-tropic isolates is associated with more rapid disease progression (10, 20, 60). Primary infection with dual-tropic or T-tropic HIV, although infrequent, often leads to rapid disease progression (16, 51). The viral and host factors that determine the higher transmission rate of M-tropic HIV-1 and the slow evolution of dual- or T-tropic variants remain to be elucidated (4). These observations suggest that infection with T-tropic, SI virus isolates in animal model systems with SCID mice grafted with human lymphoid cells or tissue should lead to a rapid course of disease (1, 8, 44 46). While some studies in SCID mice grafted with fetal thymus and liver are in agreement with this concept (33, 34), our previous studies with the human peripheral blood leukocyte-scid (hu-pbl-scid) mouse model have shown that infection with M-tropic isolates (e.g., SF162) causes more rapid CD4 T-cell depletion than infection with T-tropic, SI isolates (e.g., SF33), despite similar proviral copy numbers, and that this property mapped to envelope (28, 41, 43). However, the dual-tropic 89.6 isolate (19) caused extremely rapid CD4 T-cell depletion in infected hu-pbl-scid mice that was associated with an early and transient increase in HIV-1 plasma viral RNA (29). The relationship between cell tropism of the virus isolate and the pattern of disease in hu- PBL-SCID mice is thus uncertain. We have extended these studies by determining the kinetics of HIV-1 RNA levels in serial plasma samples of hu-pbl-scid mice infected with primary patient isolates or laboratory stocks that differ in cell tropism and SI properties. The results showed significant differences in the kinetics of HIV-1 replication and CD4 T-cell depletion that are determined by the cell tropism of the virus isolate. MATERIALS AND METHODS Virus. HIV-1 SF2, HIV-1 SF162, HIV-1 JR-FL, HIV-1 JR-CSF, and HIV have been described previously (13, 19, 35, 36). HIV and HIV are recently described molecular clones that differ only by a glutamine (HIV )-to-glutamic acid (HIV ) change at position 25 of the V3 loop (14). HIV is dual-tropic and SI, while HIV is M-tropic and non-syncytium inducing (NSI) (14, 58). The two virus isolates showed similar kinetics of virus replication in activated peripheral blood mononuclear cell (PBMC) cultures (p24 antigen levels on days 4 and 8 of culture were as follows: for HIV-1 241, 130 and 18,367 pg/ml and for HIV-1 242, 90 and 9,390 pg/ml). Primary patient isolates CS93, CD65, and Downloaded from on June 28, 2018 by guest 2002

2 VOL. 72, 1998 KINETICS OF PLASMA VIREMIA IN hu-pbl-scid MICE 2003 Virus isolate TABLE 1. V3 sequences for primary and laboratory HIV-1 isolates used in these experiments Sequence Tropism cons CTRPNNNTRK--SIHIGPGRAFY----TTGE-IIGDIRQAHC CS xx xxxxa--dx---n M, NSI CD xxg v-xxxxa-drx T, SI MT82 ---LG-----xx--R----PGR-NTVF---DVT T, SI SF xx--y hxxxx---rx------k--- T, SI SF xx--t xxxxa--dx M, NSI RRL--xx xxxxARRNx M/T, SI JR-FL xx xxxx----x M, NSI JR-CSF ----S-----xx xxxx----x M, NSI Rxx--S Rxxxx--x-x M, NSI Rxx--S Rxxxx--xQx M/T, SI able to replicate in PBMC from donors homozygous for the CCR5 32-bp deletion (reference 52 and data not shown). By contrast, T-tropic isolates replicated well in MT-2 cells and PBMC from CCR5-negative donors (52). Kinetics of plasma viremia following HIV-1 infection. Each HIV-1 isolate was used to infect multiple hu-pbl-scid mice in one or more of four replicate experiments, depicted in Fig. 1 through 4. Weekly samples of plasma were used for the determination of viral RNA copy number, and results are presented for individual animals over the duration of each experiment. In experiments 1 and 4, the number of human CD4 T cells was also determined and compared to that in uninfected control animals. In the experiment shown in Fig. 1, we infected mice with one of two T-tropic isolates, SF2 or CD65, or one of two M-tropic isolates, SF162 or CS93. Infection with T-tropic isolates leads to transient viral RNA expres- MT82 are M-tropic, T-tropic, and T-tropic, respectively (52), and were used after a single round of in vitro expansion. hu-pbl-scid mice were infected with 10 3 tissue culture infectious doses (TCID) by intraperitoneal injection. TCID was determined by limiting dilution of virus stocks with phytohemagglutinin and interleukin 2 (IL-2)-activated human PBMC. Mice. C.B-17 scid/scid mice were bred in a closed, specific-pathogen-free environment at The Scripps Research Institute. Mice were screened for mouse immunoglobulin at 6 to 8 weeks of age, and animals with 10 g/ml were discarded as leaky (9). Human PBMC were prepared by density separation from normal adult donors who were Epstein-Barr virus seronegative and who were demonstrated by PCR to have normal CCR5 coding regions (52). A single normal human donor was used for each of four experiments, and no donor was used twice. The experiment shown in Fig. 5 employed a donor who was heterozygous for the 32-bp deletion in CCR5 (48). A total of cells were injected intraperitoneally into SCID mice 2 weeks prior to virus exposure, as described previously (28, 41). Each experimental group consisted of 3 to 5 mice, and most virus isolates were compared in at least two experiments. Virus infection. Plasma virus RNA copy number was determined by quantitative PCR assay (Amplicor; Roche Molecular Systems, Somerville, N.J.). Plasma samples from multiple time points of infection were frozen and subsequently assayed at the same time to minimize interassay variation. Virus infection of animals was confirmed by isolation of virus in cocultures of activated human PBMC and cells recovered from hu-pbl-scid mice by peritoneal lavage or preparation of cell suspensions from spleens or local lymph nodes or by amplification of proviral gag sequences by PCR (45). Flow cytometry. Recovery of human cells and CD4 T-cell depletion was monitored by flow cytometry. Briefly, recovered cells were stained with fluorescein- or phycoerythrin-labeled monoclonal antibodies to murine H-2K d and human CD45, CD3, CD4, CD8, CD25, CD69, CD45RA, and CD45RO. Antibodies were obtained either from immunocytometry systems (Becton Dickinson, Mountain View, Calif.) or Pharmingen (San Diego, Calif.). Staining was evaluated for a minimum of 10 4 cells with a FACscan (Becton Dickinson) flow cytometer, and data were analyzed with Cellquest (Becton Dickinson) software. Data are presented as the mean percentage of CD4 T cells as a fraction of total CD3 T cells, standardizing the result for variable recovery of total human T cells in different sites and different animals. The ratio of CD4 to CD3 T cells is reported separately for human cells recovered by peritoneal lavage and from pooled samples of local (mesenteric and periportal) lymph nodes. These lymph nodes have a higher proportion of CD45RA T cells (see Fig. 5) and show kinetics of CD4 T-cell depletion that differ from those of human cells recovered by peritoneal lavage (reference 29 and below). In HIV-1-infected mice with CD4 T-cell depletion, the number of CD8 T cells was always close to or equal to the number of CD3 T cells, indicating a loss of T cells and not CD4 modulation (data not shown). RESULTS Selection of HIV-1 isolates differing in cell tropism. The cell tropism and V3 sequences of the HIV-1 isolates used in these experiments are presented in Table 1. The origin and V3 sequences of the primary patient isolates CS93 and CD65 have recently been reported elsewhere (52). The T-tropic MT82 isolate was recovered from a patient with hemophilia who was asymptomatic at the time of isolation ( 10 years after infection) but has subsequently progressed to AIDS. Each of these virus isolates replicated well in primary cultures of PBMC or purified CD4 T cells, and none of the M-tropic isolates were FIG. 1. Plasma HIV RNA copy number in hu-pbl-scid mice infected with the T-tropic HIV-1 isolate SF2 (A), the M-tropic isolate SF162 (B), the primary T-tropic patient isolate CD65 (C), or the primary M-tropic isolate CS93 (D). Each line represents serial measurements on an individual hu-pbl-scid mouse from 1 to 6 weeks after infection. (E) Percentage of remaining CD4 T cells in the peritoneal cavity (compared to total human CD3 T cells) at 7 to 8 weeks after infection. This number was determined for individual mice (symbol above each column matches symbol for each animal in panels A through D) and compared to the mean ( standard error [SE]) for four uninfected hu-pbl-scid mice (open column with error bar). All hu-pbl-scid mice were derived from a single human donor who was Epstein-Barr virus seronegative and homozygous wild type at the CCR5 locus. The detection limit of RNA copy number was 800 in this experiment, so samples with undetectable viral RNA were assigned a value of 800. Serial samples from individual mice were saved and compared in the same Roche HIV Monitor Amplicor assay plate, and the available volume of mouse plasma determined the cut-off value for HIV RNA detection.

3 2004 PICCHIO ET AL. J. VIROL. FIG. 2. Plasma HIV RNA copy number in hu-pbl-scid mice reconstituted with cells from another human donor (also EBV negative, CCR5 wild-type homozygous) and infected with the dual-tropic 89.6 HIV-1 isolate (A), the primary T-tropic isolate CD65 (B), or the primary M-tropic isolate CS93 (C). Panels A through C show the viral RNA levels in individual hu-pbl-scid mice, and panel D shows the mean SE of each group of mice over the 5-week duration of the experiment. The limit of detection in this experiment was 200 copies/ml, and samples with no detectable viral RNA were assigned this value. sion between 1 and 4 weeks after infection, and few or no residual CD4 T cells were detectable by 7 to 8 weeks after HIV-1 infection. By contrast, most mice infected with M-tropic viruses showed increasing levels of viral RNA for up to 6 weeks after infection, and residual CD4 T cells were detected in all mice with high viral RNA levels, whereas declining viral loads were associated with reduced numbers of CD4 T cells. The two hu-pbl-scid mice with the highest viral RNA copy numbers after infection with HIV-1 SF162 died before the termination of the experiment. A second, similar experiment with the M/T-tropic 89.6 isolate as well as the T-tropic CD65 and the M-tropic CS93 HIV-1 isolates is shown in Fig. 2 (A through C, individual mice; D, group means). Infection with 89.6 resulted in a burst of viral RNA detected at 1 week after infection, followed by a decline to undetectable levels by 2 weeks, when depletion of CD4 T cells is complete (29). Infection with the T-tropic CD65 isolate resulted in a peak of plasma viral RNA at 1 or 2 weeks after infection, with a subsequent decline to the limit of detection by 3 to 5 weeks after infection. As observed previously (Fig. 1), infection with the M-tropic CS93 isolate caused a progressive increase in viral RNA levels to a mean value of 10 6 copies/ml. In the experiment shown in Fig. 3, the studies with 89.6 and SF2 were repeated and the T-tropic MT82 isolate and the M-tropic JR-FL isolate were added. Both the dual-tropic 89.6 and the T-tropic MT82 isolates produced peaks of plasma viral RNA at 1 week after infection, with rapid declines to baseline levels thereafter. Infection with T-tropic SF2 led to a later peak in plasma viral RNA levels, followed by a decline to baseline levels by 4 weeks after infection, when most CD4 T cells have been depleted (41). Infection with the M-tropic JR-FL isolate led to a more sustained high level of virus replication that was still high in all mice after 4 weeks of infection. In the last of the four experiments (Fig. 4), the M-tropic 242 isolate, the M/T-tropic 241 isolate, and the M-tropic JR-CSF isolate were compared. As noted above, 242 and 241 differ in only a single amino acid (14, 58). Human CD4 T-cell survival was measured at 2 and 4 weeks after infection in this experiment. Infection of hu-pbl-scid mice with the dual-tropic 241 isolate caused a burst of virus production at 1 week after infection and depleted all human CD4 T cells by 2 weeks after infection, a pattern similar to that seen with 89.6 infection. By contrast, infection with the M-tropic 242 isolate caused a sustained increase in viral RNA levels and caused minimal depletion of CD4 T cells at either 2 and 4 weeks after infection in human cells recovered by peritoneal lavage (Fig. 4D) or from local lymph nodes (Fig. 4E). The single amino acid change that alters coreceptor usage and cell tropism also alters the kinetics of virus replication and CD4 T-cell depletion. Infection with the M-tropic JR-CSF isolate caused lower but sustained and increasing levels of viral RNA and substantial depletion of CD4 T cells by 4 weeks after infection. We performed a similar experiment with HIV and HIV in hu-pbl-scid mice derived from a CCR5 32/ heterozygous donor, since previous experiments had shown delayed kinetics of M-tropic virus replication in such mice (52). The results (Fig. 5A) show a difference in the kinetics of plasma virus RNA levels similar to that observed in the experiment shown in Fig. 4, with HIV producing a more transient viremia than HIV Infection with 241 caused a profound decline in CD4 T cells in both peritoneal cells and lymph nodes by 2 weeks after infection, whereas mice infected with 242 showed no decline in CD4 T cells at this time (Fig. 5B). The reduction in CCR5 expression in this 32/ heterozygous donor does not impact the distinct kinetics of replication and CD4 T-cell depletion caused by the amino acid change between 242 and 241. Potential sites of HIV-1 replication. These results imply that infection with M-tropic virus may cause sustained viremia because of slower depletion of CD4 T cells, but our earlier data FIG. 3. Plasma HIV RNA copy number in hu-pbl-scid mice reconstituted with cells from a third human donor (also EBV negative, CCR5 wild-type homozygous) and infected with the dual-tropic 89.6 isolate (A), the T-tropic SF2 isolate (B), the T-tropic primary patient isolate MT82 (C), or the M-tropic JR-FL isolate (D). The limit of detection in this experiment was 400 copies/ml, and samples with no detectable viral RNA were assigned this value.

4 VOL. 72, 1998 KINETICS OF PLASMA VIREMIA IN hu-pbl-scid MICE 2005 FIG. 4. Plasma HIV RNA copy number and percentage of CD4 T cells in hu-pbl-scid mice generated from a single human donor. Five hu-pbl-scid mice were infected either with HIV-1 241, a dual-tropic, SI virus (A), or HIV-1 242, an M-tropic, NSI virus that differs only by a glutamine-to-glutamic acid change in position 25 of the V3 loop (14) (B). An additional group of five mice was infected with the M-tropic JR-CSF isolate (C). Three mice in each group were used for determination of CD4 T-cell levels at 2 weeks after infection, and the remaining two mice were examined after 4 weeks of infection. (D) Percentages SE of CD4 T cells (of total human CD3 T cells) recovered by peritoneal lavage of the animals compared to mean values for four uninfected control mice. Only one hu-pbl-scid mouse infected with HIV was available at week 4, because the mouse with 10 7 HIV RNA copies/ml at week 3 after infection died. CD4 T cells were also enumerated in regional lymph nodes (panel E) pooled from three mice (2 weeks after infection) or two mice (4 weeks after infection). Since these samples were pooled, no SE is shown. suggested that M-tropic viruses caused more rapid CD4 T- cell depletion than T-tropic viruses (28, 41). We repeated these earlier experiments with the M-tropic isolate SF162 and the T-tropic isolate SF2, but we evaluated survival of human CD4 T cells in both peritoneal lavage cells (as before) and human cells recovered from lymph nodes draining the peritoneal cavity. The percentage of surviving human CD4 T cells at 2 weeks after infection is shown in Fig. 6A. Although infection with SF162 caused a greater depletion of CD4 T cells in the population of human cells recovered from the peritoneal cavity, in agreement with our earlier results, infection with SF2 caused a significantly (P 0.05) greater depletion of human CD4 T cells in the local lymph nodes. It is thus possible that the human cells in these lymph nodes are the source of continued virus replication following infection with M-tropic but not T-tropic or dual-tropic isolates. We analyzed the composition of human cells recovered from the two sites, peritoneal cavity and local lymph nodes, of uninfected hu-pbl-scid mice by two-color flow cytometry (Fig. 6B and C). While CD3 T cells represented 90% of recovered human cells (CD45 ) FIG. 5. Plasma HIV RNA copy number and recovery of CD4 T cells in hu-pbl-scid mice generated from a single donor who is heterozygous for the CCR5 32 mutation. Five hu-pbl-scid mice were infected with either HIV or HIV (as in the experiment shown in Fig. 4). The geometric mean RNA copy number ( relative SE) for each group of mice is shown for 1 to 3 weeks after infection (A). Three mice from each group were used to determine the extent of CD4 T-cell depletion at 2 weeks after infection (B). Samples of peritoneal lavage cells (PC) were assayed from individual mice, and the mean SE is shown. Samples from lymph nodes (LN) were pooled prior to analysis, so no SE is displayed.

5 2006 PICCHIO ET AL. J. VIROL. FIG. 6. (A) Recovery of human CD4 T cells from peritoneal lavage cells (filled bars) or local lymph nodes (hatched bars) of hu-pbl-scid mice infected 2 weeks earlier with either HIV-1 SF2 or HIV-1 SF162. The numbers represent the mean SE of individual determinations on 4 to 5 mice per group and are expressed as a percentage of recovered total human T cells (CD3 ). CD3 T cells represented 90% of recovered human cells. Human cells represented 79 to 88% of all cells recovered from the peritoneal lavage of uninfected hu-pbl-scid mice and from 37 to 89% of cells recovered from local lymph nodes. The numbers of recovered human cells declined in parallel with the loss of CD4 T cells after HIV-1 infection in both sites. (B) Phenotype of human cells recovered from the peritoneal cavity of control, uninfected hu-pbl-scid mice. Two-color immunofluorescence staining of cells was performed to identify memory/activated CD4 T cells, which express CD45RO, CD25 (IL-2R alpha chain), and/or CD69. (C) Phenotype of human cells recovered from the local lymph nodes draining the peritoneal cavity of hu-pbl-scid mice and stained as in panel B. in both sites, the lymph nodes had a higher percentage of CD4 T cells and one-third of CD4 T cells had the naive CD45RA phenotype. By contrast, over 90% of human CD4 T cells recovered from the peritoneal cavity had the activated/memory CD45RO phenotype (6), and a higher percentage also expressed the CD25 IL-2 receptor, indicating recent activation. These results suggest that human CD4 T cells are more activated and/or selected for memory cells in the peritoneal cavities of hu-pbl-scid mice than in repopulated lymph nodes. DISCUSSION These results show that HIV-1 isolates which differ in cell tropism and coreceptor usage give two distinct patterns of virus replication and CD4 T-cell depletion in the hu-pbl-scid model. Infection with the M-tropic isolates SF162, JR-CSF, JR-FL, 242, and CS93 resulted in high and increasing levels of plasma virus RNA over the first 4 to 6 weeks of infection, and peak levels of viral RNA often exceeded 10 6 copies/ml (Table 2). Residual human CD4 T cells were usually present in hu-pbl-scid mice infected with M-tropic HIV-1, particularly in the lymph nodes of reconstituted mice (Fig. 6) and in those mice with the highest viremia (Fig. 1). Declining levels of viral RNA correlated with a complete or near complete loss of CD4 T cells (e.g., Fig. 1D and E). Within the group of M-tropic isolates, infection with SF162 and 242 caused more rapid increases in viral RNA levels and infection with JR-CSF resulted in slower increases (e.g., Fig. 4B versus C), but these differences did not obscure the general pattern of plasma viremia associated with M-tropic viruses. The peak levels of viral RNA differed between HIV isolates (Table 2) but were generally higher than those attained following infection with M/Tor T-tropic isolates and peaked later. Infection of hu-pbl-scid mice with M/T- or T-tropic HIV-1 isolates led to a distinctive and shared pattern of viral replication and CD4 T-cell depletion. Infection with the dualtropic isolates 89.6 and 241 led to a peak level of viral RNA at 1 week after infection, and no viral RNA was detectable at 2 or more weeks after infection in most animals (Fig. 2 through 5). Infection with M/T-tropic isolates caused the loss of nearly all CD4 T cells in both the peritoneal cavity and lymph nodes of infected mice within 2 weeks (Fig. 4 and 5), and the failure to continue virus replication is probably explained by the elimination of all CD4 target cells for infection. The peak levels of viral RNA ranged from 10 4 to 10 5 copies/ml following infection with M/T-tropic isolates (Table 2). Infection of hu-pbl-scid mice with the T-tropic isolates SF2 and CD65 caused a pattern of plasma viremia intermediate between those of M-tropic and M/T-tropic viruses (Fig. 1 through 3), but infection with the T-tropic primary isolate MT82 caused an earlier and more transient peak of viremia, similar to the pattern seen with M/T-tropic isolates (Fig. 3). Peak levels of viral RNA were observed between 1 and 3 weeks after infection, and levels tended to decline to undetectable by 4 weeks after infection. Peak viral loads varied from 10 3 to nearly 10 6 copies/ml, with the mean peak values being close to 10 5 copies/ml (Table 2), a level intermediate between the higher values seen with M- tropic virus infection and the lower values seen with M/Ttropic virus infection, although there was considerable overlap in peak viral RNA levels between individual mice infected with either M/T- or T-tropic isolates. The levels of plasma viral RNA attained 1 week after infec- Virus isolate TABLE 2. Peak viral RNA levels following infection with HIV-1 isolates differing in cell tropism Cell tropism Mean peak viral RNA copy number Mean week peak level attained CS93 M-tropic 924, JR-FL M-tropic 255, SF162 M-tropic 2,214, CD65 T-tropic 91, SF2 T-tropic 102, M/T-tropic 48, M/T-tropic 18, a n, number of hu-pbl-scid mice analyzed. n a

6 VOL. 72, 1998 KINETICS OF PLASMA VIREMIA IN hu-pbl-scid MICE 2007 tion presumably reflect the efficiency of virus transmission (in this case, the result of intraperitoneal injection of 10 3 TCID of cell-free infectious virus) and of the initial rounds of virus replication. We have not observed the onset of CD4 T-cell depletion prior to day 9 postinfection in any of a large series of experiments with these HIV-1 isolates. Although some hu- PBL-SCID mice infected with M-tropic isolates showed very high viral RNA levels by 1 week after infection, there was no consistent significant difference in the transmission of virus isolates that segregated with cell tropism (e.g., Fig. 2D). This result suggests that M-tropic viruses have only a small advantage in transmission in this animal model. However, all hu- PBL-SCID mice challenged with M- or M/T-tropic viruses are consistently infected, whereas occasional mice challenged with T-tropic isolates fail to become infected, in agreement with the results of one recent study (39). Another study (59) indicates that SCID-hu mice transplanted with human fetal thymus and liver are more easily infected with M-tropic variants of HXSB-2 than with the parental T-tropic isolate. These studies and our observations support a possible transmission advantage for M-tropic HIV-1 isolates that was not particularly evident in the present series of experiments. The most striking correlation seen in this series of experiments was that between the levels and duration of plasma viremia and the rate of CD4 T-cell depletion. Viremia was low and transient in hu-pbl-scid mice infected with M/Ttropic isolates when the pace of CD4 T-cell depletion is most rapid. Viremia was somewhat higher and more persistent following infection with two of three T-tropic isolates, resulting in intermediate rates of CD4 T-cell depletion, although the rate seemed to vary between human T cells in the peritoneal cavity (Fig. 6A, slower, and references 28 and 41) and those found in local lymph nodes (Fig. 6A, faster). Finally, viremia was sustained at high levels following infection with M-tropic isolates, resulting in slower rates of CD4 T-cell depletion, particularly in the lymph nodes repopulated with both naive and memory CD4 T cells (Fig. 6). This interpretation is in general agreement with the many observations that primary M-tropic HIV-1 isolates are less cytopathic and often show lower replication rates than M/T- or T-tropic isolates from late-stage patients (12, 20, 34, 56, 60, 61) and differs from our interpretation of earlier studies that suggested M-tropic HIV-1 isolates were more pathogenic than T-tropic isolates in the hu-pbl-scid model (41, 42). These data also suggest that the switch from M-tropic to M/T-tropic HIV-1 may be more important for increasing the rate of CD4 T-cell loss than the switch to a T-tropic variant (20, 21, 64). The increased rate of CD4 T-cell depletion caused by the single amino acid change between HIV and HIV was particularly striking (Fig. 4 and 5). These two viruses show little difference in replication rate (see Materials and Methods), so the change in cell tropism and coreceptor usage appears to be the major explanation for the enhanced pathogenicity. One of the T-tropic, SI isolates we have studied previously was SF33 (41); infection with SF33 appears to cause a more persistent infection, with lower levels of plasma viremia, than infection with other T-tropic isolates studied (data not shown). More extensive analysis of infection with this isolate is under way, but the delayed CD4 T-cell depletion caused by SF33 infection seems to be isolate specific. Recent work (7) has shown that CXCR4 is expressed primarily on naive CD4 T cells and that CCR5 is expressed mainly on memory T cells. This observation may explain the different kinetics of CD4 T-cell depletion following infection with M- or T-tropic HIV-1 in the two major sites of human cell reconstitution in hu-pbl-scid mice (Fig. 6). The fraction of naive CD45RA CD4 T cells in the lymph nodes of the mice would be resistant to M-tropic virus infection because of low expression of the CCR5 coreceptor, yet susceptible to T-tropic virus infection because of higher expression of the CXCR4 coreceptor. Almost all of the human CD4 T cells recovered from the peritoneal cavity are of the memory or activated phenotype (Fig. 6) and thus may express less CXCR4 and more CCR5. Infection with M-tropic HIV-1 isolates may progress faster in this compartment and result in the earlier loss of CD4 T cells (Fig. 6 and references 28 and 41). The sustained high viral RNA levels seen following infection with M-tropic isolates would be predicted to result from a more persistent infection in the lymph nodes of hu-pbl-scid mice which might be due to an ongoing conversion of naive T cells to an activated phenotype. Some of these cells may migrate to the peritoneal cavity, providing a source of new CD4 T cells to replace those previously depleted by infection. Alternatively, CD4 T cells infected with M-tropic HIV-1 may produce progeny virions for substantially longer than T cells infected with M/T- or T-tropic virus. The additional target cells available to M- and M/T-tropic virus, in this case monocytederived macrophages, could also contribute to the sustained virus production following infection with the M-tropic isolates. However, M/T-tropic viruses appear to be unable to establish persistent infection in macrophages or lead to macrophage destruction in this animal model, since no plasma viremia can be detected at 2 or more weeks after infection. Alternatively, infection of a very small number of macrophages may not result in detectable plasma viral RNA. It is striking that a single amino acid substitution that alters coreceptor usage (58) and syncytium-inducing properties (14) has such a profound effect on viral replication and CD4 T-cell depletion in this animal model for HIV-1 infection. The predominance of M-tropic isolates throughout most of the course of natural infection with HIV-1 suggests that there must be selective factors promoting the maintenance of the M-tropic phenotype, since the high mutation rate of the virus (18) and the small number of amino acid changes necessary to change cell tropism would otherwise allow rapid evolution of M/T- and T-tropic variants. Our results provide one potential explanation for the predominance of M-tropic HIV-1 if viral RNA levels observed during the relatively short course of infection in the hu-pbl-scid mice can be extrapolated to infectious virions recovered from chronically infected humans. If an individual were infected with a mixture of M-tropic and M/Ttropic viruses, our results suggest that most of the plasma viremia would be contributed by the M-tropic virus. This effect would result from the longer duration of virus production by individual CD4 T cells infected with M-tropic viruses compared to CD4 T cells infected with the more rapidly cytopathic dual-tropic virus. The switch to dual tropism, or acquisition of the ability to use CXCR4 as a coreceptor, would not compensate for this effect, since few naive CD4 T cells would be present as new targets for infection (3, 53). It is thus possible that many M/T-tropic variants arise transiently, are unable to displace the predominant M-tropic virus population, and disappear due to destruction of their target population, without detection in the plasma virus pool. The acquisition of the SI phenotype may also serve to isolate M/T-tropic virus in localized foci of infected cells (40, 54) and limit systemic spread of the virus. It should also be noted that differential half-lives of cells infected with HIV-1 differing in cell tropism would affect current calculations of viral and cell turnover (30, 49, 50).

7 2008 PICCHIO ET AL. J. VIROL. ACKNOWLEDGMENTS We thank Andrew Beernink, Matthew Kohls, and Rebecca Sabbe for skilled technical assistance. This work was supported by NIH grant AI to D.E.M. REFERENCES 1. Aldrovandi, G., G. Feuer, L. Gao, B. Jamieson, M. Kristeva, I. Chen, and J. Zack The SCID-hu mouse as a model for HIV-1 infection. Nature 363: Alkhatib, G., C. Combadiere, C. Broder, Y. Feng, P. Kennedy, P. Murphy, and E. Berger CC CKR5: a RANTES, MIP-1, MIP-1 receptor as a fusion cofactor for macrophage-tropic HIV-1. Science 272: Autran, B., G. Carcelain, T. Li, C. Blanc, D. Mathez, R. Tubiana, C. Katlama, P. Debre, and J. Leibowitch Positive effects of combined antiretroviral therapy on CD4 T cell homeostasis and function in advanced HIV disease. Science 277: Berger, E HIV entry and tropism: the chemokine receptor connection. AIDS 11(A):S3 S Berson, J. F., D. Long, B. J. Doranz, J. Rucker, F. R. Jirik, and R. W. Doms A seven-transmembrane domain receptor involved in fusion and entry of T-cell-tropic human immunodeficiency virus type 1 strains. J. Virol. 70: Beverley, P Immunological memory in T cells. Curr. Opin. Immunol. 3: Bleul, C., L. Wu, J. Hoxie, T. Springer, and C. MacKay The HIV coreceptors CXCR4 and CCR5 are differentially expressed and regulated on human T lymphocytes. Proc. Natl. Acad. Sci. USA 94: Bonyadi, M., L. Rabin, S. Salimi, D. Brown, J. Kosek, J. McCune, and H. Kaneshima HIV induces thymus depletion in vivo. Nature 363: Bosma, G. C., M. Fried, R. R. Custer, A. Carroll, D. M. Gibson, and M. J. Bosma Evidence of functional lymphocytes in some (leaky) SCID mice. J. Exp. Med. 167: Bozzette, S., J. McCutchan, S. Spector, B. Wright, and D. Richman A cross-sectional comparison of persons with syncytium- and non-syncytiuminducing human immunodeficiency virus. J. Infect. Dis. 168: Cheng-Mayer, C., M. Quiroga, J. W. Tung, D. Dina, and J. A. Levy Viral determinants of human immunodeficiency virus type 1 T-cell or macrophage tropism, cytopathogenicity, and CD4 antigen modulation. J. Virol. 64: Cheng-Mayer, C., D. Seto, M. Tateno, and J. A. Levy Biologic features of HIV-1 that correlate with virulence in the host. Science 240: Cheng-Mayer, C., C. Weiss, D. Seto, and J. A. Levy Isolates of human immunodeficiency virus type 1 from the brain may constitute a special subgroup of the AIDS virus. Proc. Natl. Acad. Sci. USA 86: Chesebro, B., K. Wehrly, J. Nishio, and S. Perryman Mapping of independent V3 envelope determinants of human immunodeficiency virus type 1 macrophage tropism and syncytial formation in lymphocytes. J. Virol. 70: Choe, H., M. Farzan, Y. Sun, N. Sullivan, B. Rollins, P. Ponath, L. Wu, C. Mackay, G. LaRosa, W. Newman, N. Gerard, C. Gerard, and J. Sodroski The -chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates. Cell 85: Clark, S. J., M. S. Saag, W. D. Decker, S. Campbell-Hill, J. L. Roberson, P. J. Veldkamp, J. C. Kappes, B. H. Hahn, and G. M. Shaw High titers of cytopathic virus in plasma of patients with symptomatic primary HIV-1 infection. N. Engl. J. Med. 324: Cocchi, F., A. DeVico, A. Garzino-Demo, A. Cara, R. Gallo, and P. Lusso The V3 domain of the HIV-1 gp120 envelope glycoprotein is critical for chemokine-mediated blockade of infection. Nat. Med. 2: Coffin, J HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267: Collman, R., J. W. Balliet, S. A. Gregory, H. Friedman, D. L. Kolson, N. Nathanson, and A. Srinivasan An infectious molecular clone of an unusual macrophage-tropic and highly cytopathic strain of human immunodeficiency virus type 1. J. Virol. 66: Connor, R. I., H. Mohri, Y. Cao, and D. D. Ho Increased viral burden and cytopathicity correlate temporally with CD4 T-lymphocyte decline and clinical progression in human immunodeficiency virus type 1-infected individuals. J. Virol. 67: Connor, R., K. Sheridan, D. Ceradini, S. Choe, and N. Landau Change in coreceptor use correlates with disease progression in HIV-1- infected individuals. J. Exp. Med. 185: Connor, R. I., and D. D. Ho Human immunodeficiency virus type 1 variants with increased replicative capacity develop during the asymptomatic stage before disease progression. J. Virol. 68: Deng, H., R. Liu, W. Ellmeier, S. Choe, D. Unutmaz, M. Burkhart, P. Di Marzio, S. Marmon, R. Sutton, C. Hill, C. Davis, S. Peiper, T. Schall, D. Littman, and N. Landau Identification of a major co-receptor for primary isolates of HIV-1. Nature 381: Deng, H., D. Unutmaz, V. Kewealramani, and D. Littman Expression cloning of new receptors used by simian and human immunodeficiency viruses. Nature 388: Doranz, B., J. Rucker, Y. Yi, R. Smyth, M. Samson, S. Peiper, M. Parmentier, R. Collman, and R. Doms A dual-tropic primary HIV-1 isolate that uses fusin and the -chemokine receptors CKR-5, CKR-3 and CKR-2b as fusion cofactors. Cell 85: Dragic, T., V. Litwin, G. Allaway, S. Martin, Y. Huang, K. Nagashima, C. Cayanan, P. Maddon, R. Koup, J. Moore, and W. Paxton HIV-1 entry into CD4 cells is mediated by the chemokine receptor CC-CKR-5. Nature 381: Feng, Y., C. Broder, P. Kennedy, and E. Berger HIV-1 entry co-factor: functional cdna cloning of a seven-transmembrane, G-protein coupled receptor. Science 272: Gulizia, R., J. Levy, and D. Mosier The envelope gp120 gene of human immunodeficiency virus type 1 determines the rate of CD4-positive T cell depletion in SCID mice engrafted with human peripheral blood leukocytes. J. Virol. 70: Gulizia, R. J., R. G. Collman, J. A. Levy, D. Trono, and D. E. Mosier Deletion of nef slows but does not prevent CD4-positive T-cell depletion in human immunodeficiency virus type 1-infected human-pbl-scid mice. J. Virol. 71: Ho, D., A. Neumann, A. Perelson, W. Chen, J. Leonard, and M. Markowitz Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373: Huang, Y., W. Paxton, S. Wolinsky, A. Neumann, L. Zhang, T. He, S. Kang, D. Ceradini, Z. Jin, K. Yazdandakhsh, K. Kunstman, D. Erickson, E. Dragon, N. Landau, J. Phair, D. Ho, and R. Koup The role of a mutant CCR5 allele in HIV-1 transmission and disease progression. Nat. Med. 2: Hwang, S. S., T. J. Boyle, H. K. Lyerly, and B. Cullen Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1. Science 253: Jamieson, B. D., G. M. Aldrovandi, and J. A. Zack The SCID-hu mouse: an in-vivo model for HIV-1 pathogenesis and stem cell gene therapy for AIDS. Semin. Immunol. 8: Kaneshima, H., L. Su, M. L. Bonyhadi, R. I. Connor, D. D. Ho, and J. M. McCune Rapid-high, syncytium-inducing isolates of human immunodeficiency virus type 1 induce cytopathicity in the human thymus of the SCID-hu mouse. J. Virol. 68: Koyanagi, Y., S. Miles, R. T. Mitsuyasu, J. E. Merrill, H. V. Vinters, and I. S. Y. Chen Dual infection of the central nervous system by AIDS viruses with distinct cellular tropisms. Science 236: Levy, J., A. Hoffman, S. Kramer, J. Landis, J. Shimabukuro, and L. Oshiro Isolation of lymphocytotropic retroviruses from San Francisco patients with AIDS. Science 225: Liao, F., G. Alkhatib, K. Peden, G. Sharma, E. Berger, and J. Farber STRL33, a novel cytokine receptor-like protein, functions as a fusion cofactor for both macrophage-tropic and T cell line-tropic HIV-1. J. Exp. Med. 185: Lu, Z.-H., J. Berson, Y.-H. Chen, J. Turner, T.-Y. Zhang, M. Sharron, M. Jenks, Z.-X. Wang, J. Kim, J. Rucker, J. Hoxie, S. Peiper, and R. Doms Evolution of HIV-1 co-receptor usage through interactions with distinct CCR5 and CXCR4 domains. Proc. Natl. Acad. Sci. USA 94: Markham, R., D. Schwartz, A. Templeton, J. Margolick, H. Farzadegan, D. Vlahov, and X.-F. Yu Selective transmission of HIV-1 variants to SCID mice reconstituted with human peripheral blood mononuclear cells. J. Virol. 70: Martins, L. P., N. Chenciner, B. Åsjö, A. Meyerhans, and S. Wain-Hobson Independent fluctuation of human immunodeficiency virus type 1 rev and gp41 quasispecies in vivo. J. Virol. 65: Mosier, D., R. Gulizia, P. MacIsaac, B. Torbett, and J. Levy Rapid loss of CD4 T cells in human-pbl-scid mice by noncytopathic HIV isolates. Science 260: Mosier, D., and H. Sieburg Macrophage-tropic HIV: critical for AIDS pathogenesis? Immunol. Today 15: Mosier, D. E Human immunodeficiency virus infection of human cells transplanted to severe combined immunodeficient mice. Adv. Immunol. 63: Mosier, D. E., R. J. Gulizia, S. M. Baird, and D. B. Wilson Transfer of a functional human immune system to mice with severe combined immunodeficiency. Nature 335: Mosier, D. E., R. J. Gulizia, S. M. Baird, D. B. Wilson, D. H. Spector, and S. A. Spector Human immunodeficiency virus infection of human- PBL-SCID mice. Science 251: Namikawa, R., H. Kaneshima, M. Lieberman, I. L. Weissman, and J. M. McCune Infection of the SCID-hu mouse by HIV-1. Science 242: O Brien, W. A., Y. Koyanagi, A. Namazie, J.-Q. Zhao, A. Diagne, K. Idler, J. A. Zack, and I. S. Y. Chen HIV-1 tropism for mononuclear phagocytes can be determined by regions of gp120 outside the CD4-binding domain. Nature 348: Paxton, W. A., S. R. Martin, D. Tse, T. R. O Brien, J. Skurnick, N. L.

8 VOL. 72, 1998 KINETICS OF PLASMA VIREMIA IN hu-pbl-scid MICE 2009 VanDevanter, N. Padian, J. F. Braun, D. P. Kotler, S. M. Wolinsky, and R. A. Koup Relative resistance to HIV-1 infection of CD4 lymphocytes from persons who remain uninfected despite multiple high-risk sexual exposure. Nat. Med. 2: Perelson, A., P. Essunger, Y. Cao, M. Vesanen, A. Hurley, K. Saksela, M. Markowitz, and D. Ho Decay characteristics of HIV-1-infected compartments during combination therapy. Nature 387: Perelson, A., A. Neumann, M. Markowitz, J. Leonard, and D. Ho HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science 271: Piatak, M., Jr., L. C. Yang, K. C. Luk, J. D. Lifson, M. S. Saag, S. J. Clark, J. C. Kappes, B. H. Hahn, and G. M. Shaw Viral dynamics in primary HIV-1 infection. Lancet 341:1099. (Letter.) 52. Picchio, G. R., R. J. Gulizia, and D. E. Mosier Chemokine receptor CCR5 genotype influences the kinetics of human immunodeficiency virus type 1 infection in human PBL-SCID mice. J. Virol. 71: Roederer, M., P. Raju, D. Mitra, L. Herzenberg, and L. Herzenberg HIV does not replicate in naive CD4 T cells stimulated with CD3/CD28. J. Clin. Invest. 99: Sato, H., J. Orenstein, D. Dimitrov, and M. Martin Cell-to-cell spread of HIV-1 occurs within minutes and may not involve participation of virus particles. Virology 186: Schuitemaker, H., N. A. Kootstra, R. E. de Goede, F. de Wolf, F. Miedema, and M. Tersmette Monocytotropic human immunodeficiency virus type 1 (HIV-1) variants detectable in all stages of HIV-1 infection lack T-cell line tropism and syncytium-inducing ability in primary T-cell culture. J. Virol. 65: Schuitemaker, H., N. A. Kootstra, M. Groenink, R. E. De Goede, F. Miedema, and M. Tersmette Differential tropism of clinical HIV-1 isolates for primary monocytes and promonocytic cell lines. AIDS Res. Hum. Retroviruses 8: Simmons, G., D. Wilkinson, J. D. Reeves, M. T. Dittmar, S. Beddows, J. Weber, G. Carnegie, U. Desselberger, P. W. Gray, R. A. Weiss, and P. R. Clapham Primary, syncytium-inducing human immunodeficiency virus type 1 isolates are dual-tropic and most can use either Lestr or CCR5 as coreceptors for virus entry. J. Virol. 70: Speck, R., K. Wehrly, E. Platt, R. Atchison, I. Charo, D. Kabat, B. Chesebro, and M. Goldsmith Selective employment of chemokine receptors as HIV-1 coreceptors determined by individual amino acids within the envelope V3 loop. J. Virol. 71: Su, L., H. Kaneshima, M. Bonyhadi, R. Lee, J. Auten, A. Wolf, B. Du, L. Rabin, B. Hahn, E. Terwilliger, and J. McCune Identification of HIV-1 determinants for replication in vivo. Virology 227: Tersmette, M., R. E. de Goede, B. J. Al, I. N. Winkel, R. A. Gruters, H. T. Cuypers, H. G. Huisman, and F. Miedema Differential syncytium-inducing capacity of human immunodeficiency virus isolates: frequent detection of syncytium-inducing isolates in patients with acquired immunodeficiency syndrome (AIDS) and AIDS-related complex. J. Virol. 62: Tersmette, M., J. M. Lange, R. E. de Goede, F. de Wolf, J. K. Eeftink- Schattenkerk, P. T. Schellekens, R. A. Coutinho, J. G. Huisman, J. Goudsmit, and F. Miedema Association between biological properties of human immunodeficiency virus variants and risk for AIDS and AIDS mortality. Lancet ii: Westervelt, P., D. Trowbridge, L. Epstein, B. Blumberg, Y. Li, B. Hahn, G. Shaw, R. Price, and L. Ratner Macrophage tropism determinants of human immunodeficiency virus type 1 in vivo. J. Virol. 66: Wolinsky, S., B. Korber, A. Neumann, M. Daniels, K. Kunstman, A. Whetsell, M. Furtado, Y. Cao, D. Ho, J. Safrit, and R. Koup Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection. Science 272: Zhang, L., Y. Huang, T. He, Y. Cao, and D. Ho HIV-1 subtype and second-receptor usage. Nature 383:768. Downloaded from on June 28, 2018 by guest

9 AUTHOR S CORRECTION The Cell Tropism of Human Immunodeficiency Virus Type 1 Determines the Kinetics of Plasma Viremia in SCID Mice Reconstituted with Human Peripheral Blood Leukocytes GASTÓN R. PICCHIO, RICHARD J. GULIZIA, KATHY WEHRLY, BRUCE CHESEBRO, AND DONALD E. MOSIER Department of Immunology, The Scripps Research Institute, La Jolla, California 92037, and Laboratory of Persistent Viral Diseases, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, Hamilton, Montana Volume 72, issue 3, p , We reported that a single amino acid change in the V3 region of the human immunodeficiency virus envelope protein is sufficient to alter the kinetics of plasma viremia in hu-pbl-scid mice. We have subsequently resequenced the V3 region of the 242 R5 virus stock used in these experiments and have found an additional sequence change in V3 (R to H at position 21). The virus used in these experiments thus differed from the R5X4 241 isolate (B. Chesebro, K. Wehrly, J. Nishio, and S. Perryman, J. Virol. 70: , 1996; R. F. Speck, K. Wehrly, E. J. Platt, R. E. Atchison, I. F. Charo, D. Kabat, B. Chesebro, and M. A. Goldsmith, J. Virol. 71: , 1997) in not one but two amino acids. We have compared the 242 H variant with the original 242 isolate (rederived from a sequenced plasmid) and have found that both use only CCR5 for virus entry and they exhibit similar kinetics of infection in hu-pbl-scid mice. However, the 242 H variant grows more rapidly in in vitro cultures of activated peripheral blood mononuclear cells than the rederived 242 isolate. Recent experiments also suggest that 242 H and 242 show minor differences in susceptibility to CCR5 antagonists. We conclude that 242 and the 242 H variant do differ in some biological properties, but these differences do not have any substantial impact on our previously published results. 7707

JENNIFER R. CRESON, ANDY A. LIN, QUN LI, DAVID F. BROAD, MARGO R. ROBERTS, AND STEPHEN J. ANDERSON* Cell Genesys, Inc., Foster City, California 94404

JENNIFER R. CRESON, ANDY A. LIN, QUN LI, DAVID F. BROAD, MARGO R. ROBERTS, AND STEPHEN J. ANDERSON* Cell Genesys, Inc., Foster City, California 94404 JOURNAL OF VIROLOGY, Nov. 1999, p. 9337 9347 Vol. 73, No. 11 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. The Mode and Duration of Anti-CD28 Costimulation

More information

Both Memory and CD45RA /CD62L Naive CD4 T Cells Are Infected in Human Immunodeficiency Virus Type 1-Infected Individuals

Both Memory and CD45RA /CD62L Naive CD4 T Cells Are Infected in Human Immunodeficiency Virus Type 1-Infected Individuals JOURNAL OF VIROLOGY, Aug. 1999, p. 6430 6435 Vol. 73, No. 8 0022-538X/99/$04.00 0 Both Memory and CD45RA /CD62L Naive CD4 T Cells Are Infected in Human Immunodeficiency Virus Type 1-Infected Individuals

More information

recently shown to support entry of both M- and T-tropic isolates free survival in HIV-1 infected adults [18, 20, 25 27].

recently shown to support entry of both M- and T-tropic isolates free survival in HIV-1 infected adults [18, 20, 25 27]. 1019 Impact of Heterozygosity for the Chemokine Receptor CCR5 32-bp Deleted Allele on Plasma Virus Load and CD4 T Lymphocytes in Perinatally Human Immunodeficiency Virus Infected Children at 8 Years of

More information

Patterns of Chemokine Receptor Fusion Cofactor Utilization by Human Immunodeficiency Virus Type 1 Variants from the Lungs and Blood

Patterns of Chemokine Receptor Fusion Cofactor Utilization by Human Immunodeficiency Virus Type 1 Variants from the Lungs and Blood JOURNAL OF VIROLOGY, Aug. 1999, p. 6680 6690 Vol. 73, No. 8 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. Patterns of Chemokine Receptor Fusion Cofactor

More information

The Orphan Seven-Transmembrane Receptor Apj Supports the Entry of Primary T-Cell-Line-Tropic and Dualtropic Human Immunodeficiency Virus Type 1

The Orphan Seven-Transmembrane Receptor Apj Supports the Entry of Primary T-Cell-Line-Tropic and Dualtropic Human Immunodeficiency Virus Type 1 JOURNAL OF VIROLOGY, July 1998, p. 6113 6118 Vol. 72, No. 7 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. The Orphan Seven-Transmembrane Receptor Apj Supports

More information

NOTES. Human Immunodeficiency Virus Type 1 Coreceptor Preferences Determine Target T-Cell Depletion and Cellular Tropism in Human Lymphoid Tissue

NOTES. Human Immunodeficiency Virus Type 1 Coreceptor Preferences Determine Target T-Cell Depletion and Cellular Tropism in Human Lymphoid Tissue JOURNAL OF VIROLOGY, June 2000, p. 5347 5351 Vol. 74, No. 11 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. NOTES Human Immunodeficiency Virus Type 1 Coreceptor

More information

CHEMOKINE RECEPTORS AND HUMAN IMMUNODEFICIENCY VIRUS INFECTION

CHEMOKINE RECEPTORS AND HUMAN IMMUNODEFICIENCY VIRUS INFECTION [Frontiers in Bioscience 3, d44-58, January 1, 1998] CHEMOKINE RECEPTORS AND HUMAN IMMUNODEFICIENCY VIRUS INFECTION Paul D. Bieniasz and Bryan R. Cullen Department of Genetics and Howard Hughes Medical

More information

Patterns of Changes in Human Immunodeficiency Virus Type 1 V3 Sequence Populations Late in Infection

Patterns of Changes in Human Immunodeficiency Virus Type 1 V3 Sequence Populations Late in Infection JOURNAL OF VIROLOGY, Sept. 2000, p. 8494 8501 Vol. 74, No. 18 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Patterns of Changes in Human Immunodeficiency

More information

Fayth K. Yoshimura, Ph.D. September 7, of 7 HIV - BASIC PROPERTIES

Fayth K. Yoshimura, Ph.D. September 7, of 7 HIV - BASIC PROPERTIES 1 of 7 I. Viral Origin. A. Retrovirus - animal lentiviruses. HIV - BASIC PROPERTIES 1. HIV is a member of the Retrovirus family and more specifically it is a member of the Lentivirus genus of this family.

More information

Received October 3, 1997; accepted February 10, 1998

Received October 3, 1997; accepted February 10, 1998 VIROLOGY 244, 66 73 (1998) ARTICLE NO. VY989082 Reduced HIV-1 Infectability of CD4 Lymphocytes from Exposed-Uninfected Individuals: Association with Low Expression of CCR5 and High Production of -Chemokines

More information

Received 6 November 1997/Accepted 23 February 1998

Received 6 November 1997/Accepted 23 February 1998 JOURNAL OF VIROLOGY, June 1998, p. 5099 5107 Vol. 72, No. 6 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology Evolution of Syncytium-Inducing and Non-Syncytium-Inducing Biological

More information

The level of HIV infection of macrophages is determined by interaction of viral and host cell genotypes

The level of HIV infection of macrophages is determined by interaction of viral and host cell genotypes The level of HIV infection of macrophages is determined by interaction of viral and host cell genotypes A. L. Cunningham, S. Li, J. Juarez, G. Lynch, M. Alali, and H. Naif Centre for Virus Research, The

More information

The leukotriene B 4 receptor functions as a novel type of coreceptor mediating entry of primary HIV-1 isolates into CD4-positive cells

The leukotriene B 4 receptor functions as a novel type of coreceptor mediating entry of primary HIV-1 isolates into CD4-positive cells Proc. Natl. Acad. Sci. USA Vol. 95, pp. 9530 9534, August 1998 Medical Sciences The leukotriene B 4 receptor functions as a novel type of coreceptor mediating entry of primary HIV-1 isolates into CD4-positive

More information

Received 18 July 2003/Returned for modification 5 September 2003/Accepted 17 October 2003

Received 18 July 2003/Returned for modification 5 September 2003/Accepted 17 October 2003 CLINICAL AND DIAGNOSTIC LABORATORY IMMUNOLOGY, Jan. 2004, p. 229 234 Vol. 11, No. 1 1071-412X/04/$08.00 0 DOI: 10.1128/CDLI.11.1.229 234.2004 Copyright 2004, American Society for Microbiology. All Rights

More information

MATERIALS AND METHODS. (MIP-1 and MIP-1 ), and RANTES (regulated on activation, levels of -chemokines, which play a significant role in

MATERIALS AND METHODS. (MIP-1 and MIP-1 ), and RANTES (regulated on activation, levels of -chemokines, which play a significant role in Proc. Natl. Acad. Sci. USA Vol. 93, pp. 14076 14081, November 1996 Medical Sciences HIV replication in CD4 T cells of HIV-infected individuals is regulated by a balance between the viral suppressive effects

More information

CDC site UNAIDS Aids Knowledge Base http://www.cdc.gov/hiv/dhap.htm http://hivinsite.ucsf.edu/insite.jsp?page=kb National Institute of Allergy and Infectious Diseases http://www.niaid.nih.gov/default.htm

More information

Biological Phenotype of Human Immunodeficiency Virus Type 1

Biological Phenotype of Human Immunodeficiency Virus Type 1 JOURNAL OF VIROLOGY, Mar. 1992, p. 1354-1360 0022-538X/92/031354-07$02.00/0 Copyright 1992, American Society for Microbiology Vol. 66, No. 3 Biological Phenotype of Human Immunodeficiency Virus Type 1

More information

ACTG Laboratory Technologist Committee Revised Version 2.0 ACTG Lab Man HIV Syncytium-Inducing (MT-2) assay 29 April 2004

ACTG Laboratory Technologist Committee Revised Version 2.0 ACTG Lab Man HIV Syncytium-Inducing (MT-2) assay 29 April 2004 HIV SYNCYTIUM-INDUCING (MT-2) ASSAY 1. BACKGROUND and CLINICAL SIGNIFICANCE Host and viral factors may play a role in determining the way in which an individual responds to anti-retroviral therapy. Presence

More information

Received 6 February 1997/Accepted 19 May 1997

Received 6 February 1997/Accepted 19 May 1997 JOURNAL OF VIROLOGY, Sept. 1997, p. 6296 6304 Vol. 71, No. 9 0022-538X/97/$04.00 0 Copyright 1997, American Society for Microbiology Envelope Glycoproteins from Human Immunodeficiency Virus Types 1 and

More information

JOURNAL OF VIROLOGY, Feb. 2000, p Vol. 74, No. 4. Copyright 2000, American Society for Microbiology. All Rights Reserved.

JOURNAL OF VIROLOGY, Feb. 2000, p Vol. 74, No. 4. Copyright 2000, American Society for Microbiology. All Rights Reserved. JOURNAL OF VIROLOGY, Feb. 2000, p. 1787 1793 Vol. 74, No. 4 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Involvement of both the V2 and V3 Regions of the

More information

MID 36. Cell. HIV Life Cycle. HIV Diagnosis and Pathogenesis. HIV-1 Virion HIV Entry. Life Cycle of HIV HIV Entry. Scott M. Hammer, M.D.

MID 36. Cell. HIV Life Cycle. HIV Diagnosis and Pathogenesis. HIV-1 Virion HIV Entry. Life Cycle of HIV HIV Entry. Scott M. Hammer, M.D. Life Cycle Diagnosis and Pathogenesis Scott M. Hammer, M.D. -1 Virion Entry Life Cycle of Entry -1 virion -1 Virus virion envelope Cell membrane receptor RELEASE OF PROGENY VIRUS REVERSE Co- TRANSCRIPTION

More information

Within-host HIV-1 evolution in relation to viral coreceptor use and host environment Edo Matas, D.

Within-host HIV-1 evolution in relation to viral coreceptor use and host environment Edo Matas, D. UvA-DARE (Digital Academic Repository) Within-host HIV-1 evolution in relation to viral coreceptor use and host environment Edo Matas, D. Link to publication Citation for published version (APA): Edo Matas,

More information

Low immune activation despite high levels of pathogenic HIV-1 results in long-term asymptomatic disease

Low immune activation despite high levels of pathogenic HIV-1 results in long-term asymptomatic disease Low immune activation despite high levels of pathogenic HIV-1 results in long-term asymptomatic disease Shailesh K. Choudhary 1 *, Nienke Vrisekoop 2 *, Christine A. Jansen 2, Sigrid A. Otto 2, Hanneke

More information

Does A Significant Change in CD4 Cell Count Affect The Number of Amino Acid Mutations In A Subject s Corresponding DNA Sequence

Does A Significant Change in CD4 Cell Count Affect The Number of Amino Acid Mutations In A Subject s Corresponding DNA Sequence Does A Significant Change in CD4 Cell Count Affect The Number of Amino Acid Mutations In A Subject s Corresponding DNA Sequence Courtney Merriam and Shivum Desai Biology 368: Bioinformatics Loyola Marymount

More information

Slow Human Immunodeficiency Virus (HIV) Infectivity Correlated with Low HIV Coreceptor Levels

Slow Human Immunodeficiency Virus (HIV) Infectivity Correlated with Low HIV Coreceptor Levels CLINICAL AND DIAGNOSTIC LABORATORY IMMUNOLOGY, Sept. 2001, p. 932 936 Vol. 8, No. 5 1071-412X/01/$04.00 0 DOI: 10.1128/CDLI.8.5.932 936.2001 Copyright 2001, American Society for Microbiology. All Rights

More information

Received 28 July 1997/Accepted 3 November 1997

Received 28 July 1997/Accepted 3 November 1997 JOURNAL OF VIROLOGY, Feb. 1998, p. 1627 1631 Vol. 72, No. 2 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology Herpesvirus Saimiri-Transformed Human CD4 T-Cell Lines: an Efficient

More information

Nature Medicine: doi: /nm.2109

Nature Medicine: doi: /nm.2109 HIV 1 Infects Multipotent Progenitor Cells Causing Cell Death and Establishing Latent Cellular Reservoirs Christoph C. Carter, Adewunmi Onafuwa Nuga, Lucy A. M c Namara, James Riddell IV, Dale Bixby, Michael

More information

Chapter 8. Slower CD4 T cell decline in Ethiopian versus Dutch HIV 1 infected individuals is due to lower T cell proliferation rates

Chapter 8. Slower CD4 T cell decline in Ethiopian versus Dutch HIV 1 infected individuals is due to lower T cell proliferation rates Slower CD4 T cell decline in Ethiopian versus Dutch HIV 1 infected individuals is due to lower T cell proliferation rates Nienke Vrisekoop *1, Belete Tegbaru *1,2, Margreet Westerlaken 1, Dawit Wolday

More information

Rabbit Cells Expressing Human CD4 and Human CCR5 Are Highly Permissive for Human Immunodeficiency Virus Type 1 Infection

Rabbit Cells Expressing Human CD4 and Human CCR5 Are Highly Permissive for Human Immunodeficiency Virus Type 1 Infection JOURNAL OF VIROLOGY, July 1998, p. 5728 5734 Vol. 72, No. 7 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Rabbit Cells Expressing Human CD4 and Human CCR5

More information

Continued Utilization of CCR5 Coreceptor by a Newly Derived T-Cell Line-Adapted Isolate of Human Immunodeficiency Virus Type 1

Continued Utilization of CCR5 Coreceptor by a Newly Derived T-Cell Line-Adapted Isolate of Human Immunodeficiency Virus Type 1 JOURNAL OF VIROLOGY, Sept. 1998, p. 7603 7608 Vol. 72, No. 9 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Continued Utilization of CCR5 Coreceptor by a

More information

Pathogenesis of HIV infection

Pathogenesis of HIV infection Infectious Disease Reports 2013; volume 5:s1e6 Pathogenesis of HIV infection Hassan M. Naif Molecular Virology Program, Medical Biotechnology, Al-Nahrain University, Baghdad, Iraq Abstract Over the past

More information

Novel Viral Markers Predict HIV Disease Progression

Novel Viral Markers Predict HIV Disease Progression Novel Viral Markers Predict HIV Disease Progression Reprinted from The prn Notebook september 2004 Dr. James F. Braun, Editor-in-Chief Tim Horn, Executive Editor. Published in New York City by the Physicians

More information

Primary CD8 cells from HIV-infected individuals can suppress productive infection of macrophages independent of -chemokines

Primary CD8 cells from HIV-infected individuals can suppress productive infection of macrophages independent of -chemokines Proc. Natl. Acad. Sci. USA Vol. 95, pp. 1725 1729, February 1998 Immunology Primary CD8 cells from HIV-infected individuals can suppress productive infection of macrophages independent of -chemokines EDWARD

More information

The Second Extracellular Loop of CXCR4 Determines Its Function as a Receptor for Feline Immunodeficiency Virus

The Second Extracellular Loop of CXCR4 Determines Its Function as a Receptor for Feline Immunodeficiency Virus JOURNAL OF VIROLOGY, Aug. 1998, p. 6475 6481 Vol. 72, No. 8 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. The Second Extracellular Loop of CXCR4 Determines

More information

HIV/AIDS & Immune Evasion Strategies. The Year First Encounter: Dr. Michael Gottleib. Micro 320: Infectious Disease & Defense

HIV/AIDS & Immune Evasion Strategies. The Year First Encounter: Dr. Michael Gottleib. Micro 320: Infectious Disease & Defense Micro 320: Infectious Disease & Defense HIV/AIDS & Immune Evasion Strategies Wilmore Webley Dept. of Microbiology The Year 1981 Reported by MS Gottlieb, MD, HM Schanker, MD, PT Fan, MD, A Saxon, MD, JD

More information

HIV Anti-HIV Neutralizing Antibodies

HIV Anti-HIV Neutralizing Antibodies ,**/ The Japanese Society for AIDS Research The Journal of AIDS Research : HIV HIV Anti-HIV Neutralizing Antibodies * Junji SHIBATA and Shuzo MATSUSHITA * Division of Clinical Retrovirology and Infectious

More information

Supporting Information

Supporting Information Supporting Information Horwitz et al. 73/pnas.35295 A Copies ml - C 3NC7 7 697 698 7 7 73 76-2 2 Days Gp2 residue G458D G459D T278A 7/36 N28 K D 28 459 A28T ID# 697 ID# 698 ID# 7 ID# 7 ID# 73 ID# 76 ID#

More information

Polymorphism in RANTES chemokine promoter affects HIV-1 disease progression

Polymorphism in RANTES chemokine promoter affects HIV-1 disease progression Proc. Natl. Acad. Sci. USA Vol. 96, pp. 4581 4585, April 1999 Medical Sciences Polymorphism in RANTES chemokine promoter affects HIV-1 disease progression HUANLIANG LIU*, DAVID CHAO*, EMI E. NAKAYAMA,

More information

Human Immunodeficiency Virus

Human Immunodeficiency Virus Human Immunodeficiency Virus Virion Genome Genes and proteins Viruses and hosts Diseases Distinctive characteristics Viruses and hosts Lentivirus from Latin lentis (slow), for slow progression of disease

More information

Centers for Disease Control August 9, 2004

Centers for Disease Control August 9, 2004 HIV CDC site UNAIDS Aids Knowledge Base http://www.cdc.gov/hiv/dhap.htm http://hivinsite.ucsf.edu/insite.jsp?page=kb National Institute of Allergy and Infectious Diseases http://www.niaid.nih.gov/default.htm

More information

A PROJECT ON HIV INTRODUCED BY. Abdul Wahab Ali Gabeen Mahmoud Kamal Singer

A PROJECT ON HIV INTRODUCED BY. Abdul Wahab Ali Gabeen Mahmoud Kamal Singer A PROJECT ON HIV INTRODUCED BY Abdul Wahab Ali Gabeen Mahmoud Kamal Singer Introduction: Three groups of nations have been identified in which the epidemiology of HIV(Human Immunodeficiency Virus) varies:

More information

A Reliable Phenotype Predictor for Human Immunodeficiency Virus Type 1 Subtype C Based on Envelope V3 Sequences

A Reliable Phenotype Predictor for Human Immunodeficiency Virus Type 1 Subtype C Based on Envelope V3 Sequences JOURNAL OF VIROLOGY, May 2006, p. 4698 4704 Vol. 80, No. 10 0022-538X/06/$08.00 0 doi:10.1128/jvi.80.10.4698 4704.2006 Copyright 2006, American Society for Microbiology. All Rights Reserved. A Reliable

More information

Received 27 October 1997/Accepted 2 February 1998

Received 27 October 1997/Accepted 2 February 1998 JOURNAL OF VIROLOGY, May 1998, p. 4032 4037 Vol. 72, No. 5 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology T-Cell-Line-Tropic Human Immunodeficiency Virus Type 1 That Is Made Resistant

More information

JOURNAL OF VIROLOGY, July 1999, p Vol. 73, No. 7. Copyright 1999, American Society for Microbiology. All Rights Reserved.

JOURNAL OF VIROLOGY, July 1999, p Vol. 73, No. 7. Copyright 1999, American Society for Microbiology. All Rights Reserved. JOURNAL OF VIROLOGY, July 1999, p. 5577 5585 Vol. 73, No. 7 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. Shift of Clinical Human Immunodeficiency Virus

More information

MedChem 401~ Retroviridae. Retroviridae

MedChem 401~ Retroviridae. Retroviridae MedChem 401~ Retroviridae Retroviruses plus-sense RNA genome (!8-10 kb) protein capsid lipid envelop envelope glycoproteins reverse transcriptase enzyme integrase enzyme protease enzyme Retroviridae The

More information

CD4-Independent Infection of Two CD4 /CCR5 /CXCR4 Pre-T-Cell Lines by Human and Simian Immunodeficiency Viruses

CD4-Independent Infection of Two CD4 /CCR5 /CXCR4 Pre-T-Cell Lines by Human and Simian Immunodeficiency Viruses JOURNAL OF VIROLOGY, July 2000, p. 6689 6694 Vol. 74, No. 14 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. CD4-Independent Infection of Two CD4 /CCR5 /CXCR4

More information

Isolation, Propagation, and Titration of Human Immunodeficiency Virus Type 1 From Peripheral Blood of Infected Individuals

Isolation, Propagation, and Titration of Human Immunodeficiency Virus Type 1 From Peripheral Blood of Infected Individuals Isolation of HIV-1 From PBMC of Infected Individuals 17 2 Isolation, Propagation, and Titration of Human Immunodeficiency Virus Type 1 From Peripheral Blood of Infected Individuals Hanneke Schuitemaker

More information

Micropathology Ltd. University of Warwick Science Park, Venture Centre, Sir William Lyons Road, Coventry CV4 7EZ

Micropathology Ltd. University of Warwick Science Park, Venture Centre, Sir William Lyons Road, Coventry CV4 7EZ www.micropathology.com info@micropathology.com Micropathology Ltd Tel 24hrs: +44 (0) 24-76 323222 Fax / Ans: +44 (0) 24-76 - 323333 University of Warwick Science Park, Venture Centre, Sir William Lyons

More information

HIV 101: Fundamentals of HIV Infection

HIV 101: Fundamentals of HIV Infection HIV 101: Fundamentals of HIV Infection David H. Spach, MD Professor of Medicine University of Washington Seattle, Washington Learning Objectives After attending this presentation, learners will be able

More information

Primary Human Immunodeficiency Virus Type 1 Viremia and Central Nervous System Invasion in a Novel hu-pbl-immunodeficient Mouse Strain

Primary Human Immunodeficiency Virus Type 1 Viremia and Central Nervous System Invasion in a Novel hu-pbl-immunodeficient Mouse Strain JOURNAL OF VIROLOGY, Mar. 1997, p. 2417 2424 Vol. 71, No. 3 0022-538X/97/$04.00 0 Copyright 1997, American Society for Microbiology Primary Human Immunodeficiency Virus Type 1 Viremia and Central Nervous

More information

5. Over the last ten years, the proportion of HIV-infected persons who are women has: a. Increased b. Decreased c. Remained about the same 1

5. Over the last ten years, the proportion of HIV-infected persons who are women has: a. Increased b. Decreased c. Remained about the same 1 Epidemiology 227 April 24, 2009 MID-TERM EXAMINATION Select the best answer for the multiple choice questions. There are 60 questions and 9 pages on the examination. Each question will count one point.

More information

ACQUIRED IMMUNODEFICIENCY SYNDROME. How does HIV-1 infect a susceptible human cell? Current thinking. Ali A. Al-Jabri

ACQUIRED IMMUNODEFICIENCY SYNDROME. How does HIV-1 infect a susceptible human cell? Current thinking. Ali A. Al-Jabri SQU JOURNAL FOR SCIENTIFIC RESEARCH: MEDICAL SCIENCES 2003 VOL 5, NO. 1 2, 31 44 SULTAN QABOOS UNIVERSITY R E V I E W How does HIV-1 infect a susceptible human cell? Current thinking Ali A. Al-Jabri (

More information

Immunodeficiency. (2 of 2)

Immunodeficiency. (2 of 2) Immunodeficiency (2 of 2) Acquired (secondary) immunodeficiencies More common Many causes such as therapy, cancer, sarcoidosis, malnutrition, infection & renal disease The most common of which is therapy-related

More information

Differential coreceptor expression allows for independent evolution of non syncytium-inducing and syncytium-inducing HIV-1

Differential coreceptor expression allows for independent evolution of non syncytium-inducing and syncytium-inducing HIV-1 Differential coreceptor expression allows for independent evolution of non syncytium-inducing and syncytium-inducing HIV-1 Ronald P. van Rij, Hetty Blaak, Janny A. Visser, Margreet Brouwer, Ronald Rientsma,

More information

Suppression of HIV replication in the resting CD4 T cell reservoir by autologous CD8

Suppression of HIV replication in the resting CD4 T cell reservoir by autologous CD8 Suppression of HIV replication in the resting CD4 T cell reservoir by autologous CD8 T cells: Implications for the development of therapeutic strategies Tae-Wook Chun*, J. Shawn Justement, Susan Moir,

More information

Nonsynonymous Amino Acid Mutations in gp120 Binding Sites are Related to Progression of HIV-1

Nonsynonymous Amino Acid Mutations in gp120 Binding Sites are Related to Progression of HIV-1 Nonsynonymous Amino Acid Mutations in gp120 Binding Sites are Related to Progression of HIV-1 Matthew Allegretti and Anindita Varshneya BIOL 368: Bioinformatics Laboratory Loyola Marymount University November

More information

The effect of different immune responses on the evolution of virulent CXCR4-tropic HIV

The effect of different immune responses on the evolution of virulent CXCR4-tropic HIV The effect of different immune responses on the evolution of virulent CXCR4-tropic HIV Dominic Wodarz{ and Martin A. Nowak * { Department of Zoology, University of Oxford, South Parks Road, Oxford OX1

More information

Low ds/dn Does Not Correlate With High Variation of Amino Acid Sequences Along the gp120 Protein Structure

Low ds/dn Does Not Correlate With High Variation of Amino Acid Sequences Along the gp120 Protein Structure Low ds/dn Does Not Correlate With High Variation of Amino Acid Sequences Along the gp120 Protein Structure Zach Goldstein & Jordan Detamore BIOL 368: Bioinformatics Laboratory Department of Biology Loyola

More information

Expression of CXCR4 on feline peripheral blood mononuclear. cells: effect of feline immunodeficiency virus (FIV) infection

Expression of CXCR4 on feline peripheral blood mononuclear. cells: effect of feline immunodeficiency virus (FIV) infection Expression of CXCR4 on feline peripheral blood mononuclear cells: effect of feline immunodeficiency virus (FIV) infection BRIAN J. WILLETT*, CELIA A. CANNON & MARGARET J. HOSIE Retrovirus Research Laboratory,

More information

HIV INFECTION: An Overview

HIV INFECTION: An Overview HIV INFECTION: An Overview UNIVERSITY OF PAPUA NEW GUINEA SCHOOL OF MEDICINE AND HEALTH SCIENCES DIVISION OF BASIC MEDICAL SCIENCES DISCIPLINE OF BIOCHEMISTRY & MOLECULAR BIOLOGY PBL MBBS II SEMINAR VJ

More information

IL-13 acts on macrophages to block the completion of reverse transcription, inhibit virus production, and reduce virus infectivity

IL-13 acts on macrophages to block the completion of reverse transcription, inhibit virus production, and reduce virus infectivity IL-13 acts on macrophages to block the completion of reverse transcription, inhibit virus production, and reduce virus infectivity Luis J. Montaner, Robert T. Bailer, and Siamon Gordon* The WLstar In.stitute

More information

Nef functions in BLT mice to enhance HIV-1 replication and deplete CD4 + CD8 + thymocytes

Nef functions in BLT mice to enhance HIV-1 replication and deplete CD4 + CD8 + thymocytes Zou et al. Retrovirology 12, 9:44 RESEARCH Open Access Nef functions in BLT mice to enhance HIV-1 replication and deplete CD4 + CD8 + thymocytes Wei Zou 1, Paul W Denton 1, Richard L Watkins 1, John F

More information

Expression and Function of Chemokine Receptors on Human Thymocytes: Implications for Infection by Human Immunodeficiency Virus Type 1

Expression and Function of Chemokine Receptors on Human Thymocytes: Implications for Infection by Human Immunodeficiency Virus Type 1 JOURNAL OF VIROLOGY, Sept. 2001, p. 8752 8760 Vol. 75, No. 18 0022-538X/01/$04.00 0 DOI: 10.1128/JVI.75.18.8752 8760.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved. Expression

More information

Silke Meister, 1 Claas Otto, 1 Armin Papkalla, 1 Mandy Krumbiegel, Stefan Pöhlmann, 2 and Frank Kirchhoff 3

Silke Meister, 1 Claas Otto, 1 Armin Papkalla, 1 Mandy Krumbiegel, Stefan Pöhlmann, 2 and Frank Kirchhoff 3 Virology 284, 287 296 (2001) doi:10.1006/viro.2001.0852, available online at http://www.idealibrary.com on Basic Amino Acid Residues in the V3 Loop of Simian Immunodeficiency Virus Envelope Alter Viral

More information

Animal Models to Understand Immunity

Animal Models to Understand Immunity Animal Models to Understand Immunity Hussein El Saghire hesaghir@sckcen.be Innate Adaptive immunity Immunity MAPK and NF-kB TLR pathways receptors Fast Slow Non-specific Specific NOD-like receptors T-cell

More information

Mono Mac 1: a new in vitro model system to study HIV-1 infection in human cells of the mononuclear phagocyte series

Mono Mac 1: a new in vitro model system to study HIV-1 infection in human cells of the mononuclear phagocyte series Mono Mac 1: a new in vitro model system to study HIV-1 infection in human cells of the mononuclear phagocyte series Nicolas Genois, Gilles A. Robichaud, and Michel J. Tremblay Centre de Recherche en Infectiologie,

More information

Decay characteristics of HIV-1- infected compartments during combination therapy

Decay characteristics of HIV-1- infected compartments during combination therapy Decay characteristics of HIV-1- infected compartments during combination therapy Perelson et al. 1997 Kelsey Collins BIOL0380 September 28, 2009 SUMMARY Analyzed decay patterns of viral load of HIV- 1-infected

More information

In vivo analysis of HIV replication and persistence in the myeloid compartment

In vivo analysis of HIV replication and persistence in the myeloid compartment In vivo analysis of HIV replication and persistence in the myeloid compartment J. Honeycutt, A. Wahl, J. Foster, R.A. Spagnulo and J. Victor Garcia Division of Infections Diseases UNC Center for AIDS Research

More information

Apelin, the Natural Ligand of the Orphan Seven-Transmembrane Receptor APJ, Inhibits Human Immunodeficiency Virus Type 1 Entry

Apelin, the Natural Ligand of the Orphan Seven-Transmembrane Receptor APJ, Inhibits Human Immunodeficiency Virus Type 1 Entry JOURNAL OF VIROLOGY, Dec. 2000, p. 11972 11976 Vol. 74, No. 24 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Apelin, the Natural Ligand of the Orphan Seven-Transmembrane

More information

Received 8 October 1997/Accepted 5 January 1998

Received 8 October 1997/Accepted 5 January 1998 JOURNAL OF VIROLOGY, Apr. 1998, p. 3248 3258 Vol. 72, No. 4 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology In Vivo Replication Capacity Rather Than In Vitro Macrophage Tropism

More information

JOURNAL OF VIROLOGY, June 1999, p Vol. 73, No. 6. Copyright 1999, American Society for Microbiology. All Rights Reserved.

JOURNAL OF VIROLOGY, June 1999, p Vol. 73, No. 6. Copyright 1999, American Society for Microbiology. All Rights Reserved. JOURNAL OF VIROLOGY, June 1999, p. 5244 5248 Vol. 73, No. 6 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. Human Erythrocyte Glycosphingolipids as Alternative

More information

Bicyclams, Selective Antagonists of the Human Chemokine Receptor CXCR4, Potently Inhibit Feline Immunodeficiency Virus Replication

Bicyclams, Selective Antagonists of the Human Chemokine Receptor CXCR4, Potently Inhibit Feline Immunodeficiency Virus Replication JOURNAL OF VIROLOGY, Aug. 1999, p. 6346 6352 Vol. 73, No. 8 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. Bicyclams, Selective Antagonists of the Human Chemokine

More information

MOLECULAR AND PHENOTYPIC CHARACTERISTICS OF NEUROTROPIC HIV- 1 SUBTYPE E

MOLECULAR AND PHENOTYPIC CHARACTERISTICS OF NEUROTROPIC HIV- 1 SUBTYPE E MOLECULAR AND PHENOTYPIC CHARACTERISTICS OF NEUROTROPIC HIV- 1 SUBTYPE E Surangrat Srisurapanon', Kwonchit Samransurp2, Somsith Tunsupasawasdeeku13, Uchara Chaowanich3, Paijitr Warachit4, Ruengpung Sutthent2

More information

R5 to X4 Switch of the Predominant HIV-1 Population in Cellular Reservoirs During Effective Highly Active Antiretroviral Therapy

R5 to X4 Switch of the Predominant HIV-1 Population in Cellular Reservoirs During Effective Highly Active Antiretroviral Therapy BASIC SCIENCE R5 to X4 Switch of the Predominant HIV-1 Population in Cellular Reservoirs During Effective Highly Active Antiretroviral Therapy Pierre Delobel,* Karine Sandres-Sauné, PhD,* Michelle Cazabat,*

More information

JOURNAL OF VIROLOGY, June 1999, p Vol. 73, No. 6. Copyright 1999, American Society for Microbiology. All Rights Reserved.

JOURNAL OF VIROLOGY, June 1999, p Vol. 73, No. 6. Copyright 1999, American Society for Microbiology. All Rights Reserved. JOURNAL OF VIROLOGY, June 1999, p. 4866 4881 Vol. 73, No. 6 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. Definition of the Stage of Host Cell Genetic Restriction

More information

Human Immunodeficiency Virus Type-1 Myeloid Derived Suppressor Cells Inhibit Cytomegalovirus Inflammation through Interleukin-27 and B7-H4

Human Immunodeficiency Virus Type-1 Myeloid Derived Suppressor Cells Inhibit Cytomegalovirus Inflammation through Interleukin-27 and B7-H4 Human Immunodeficiency Virus Type-1 Myeloid Derived Suppressor Cells Inhibit Cytomegalovirus Inflammation through Interleukin-27 and B7-H4 Ankita Garg, Rodney Trout and Stephen A. Spector,,* Department

More information

Clinical Significance of Human Immunodeficiency Virus Type 1 Replication Fitness

Clinical Significance of Human Immunodeficiency Virus Type 1 Replication Fitness CLINICAL MICROBIOLOGY REVIEWS, Oct. 2007, p. 550 578 Vol. 20, No. 4 0893-8512/07/$08.00 0 doi:10.1128/cmr.00017-07 Copyright 2007, American Society for Microbiology. All Rights Reserved. Clinical Significance

More information

Differential effects of R5 and X4 human immunodeficiency virus type 1 infection on CD4 + cell proliferation and activation

Differential effects of R5 and X4 human immunodeficiency virus type 1 infection on CD4 + cell proliferation and activation Journal of General Virology (2005), 86, 1171 1179 DOI 10.1099/vir.0.80674-0 Differential effects of R5 and X4 human immunodeficiency virus type 1 infection on CD4 + cell proliferation and activation Christopher

More information

Host-Specific Driving Force in Human Immunodeficiency Virus Type 1 Evolution In Vivo

Host-Specific Driving Force in Human Immunodeficiency Virus Type 1 Evolution In Vivo JOURNAL OF VIROLOGY, Mar. 1997, p. 2555 2561 Vol. 71, No. 3 0022-538X/97/$04.00 0 Copyright 1997, American Society for Microbiology Host-Specific Driving Force in Human Immunodeficiency Virus Type 1 Evolution

More information

Role of the β-chemokine Receptors CCR3 and CCR5 in Human Immunodeficiency Virus Type 1 Infection of Monocytes and Microglia

Role of the β-chemokine Receptors CCR3 and CCR5 in Human Immunodeficiency Virus Type 1 Infection of Monocytes and Microglia University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Virology Papers Virology, Nebraska Center for April 1998 Role of the β-chemokine Receptors CCR3 and CCR5 in Human Immunodeficiency

More information

Shared Usage of the Chemokine Receptor CXCR4 by the Feline and Human Immunodeficiency Viruses

Shared Usage of the Chemokine Receptor CXCR4 by the Feline and Human Immunodeficiency Viruses JOURNAL OF VIROLOGY, Sept. 1997, p. 6407 6415 Vol. 71, No. 9 0022-538X/97/$04.00 0 Copyright 1997, American Society for Microbiology Shared Usage of the Chemokine Receptor CXCR4 by the Feline and Human

More information

MID 36. Cell. HIV Life Cycle. HIV Diagnosis and Pathogenesis. HIV-1 Virion HIV Entry. Life Cycle of HIV HIV Entry. Scott M. Hammer, M.D.

MID 36. Cell. HIV Life Cycle. HIV Diagnosis and Pathogenesis. HIV-1 Virion HIV Entry. Life Cycle of HIV HIV Entry. Scott M. Hammer, M.D. Life Cycle Diagnosis and Pathogenesis Scott M. Hammer, M.D. 1 Virion Entry Life Cycle of Entry 1 virion 1 Virus virion envelope Cell CD4membrane receptor RELEASE OF PROGENY VIRUS REVERSE Coreceptor TRANSCRIPTION

More information

Treatment with IL-7 Prevents the Decline of Circulating CD4 + T Cells during the Acute Phase of SIV Infection in Rhesus Macaques

Treatment with IL-7 Prevents the Decline of Circulating CD4 + T Cells during the Acute Phase of SIV Infection in Rhesus Macaques SUPPORTING INFORMATION FOR: Treatment with IL-7 Prevents the Decline of Circulating CD4 + T Cells during the Acute Phase of SIV Infection in Rhesus Macaques Lia Vassena, 1,2 Huiyi Miao, 1 Raffaello Cimbro,

More information

Quantification of CCR5 mrna in Human Lymphocytes and Macrophages by Real-Time Reverse Transcriptase PCR Assay

Quantification of CCR5 mrna in Human Lymphocytes and Macrophages by Real-Time Reverse Transcriptase PCR Assay CLINICAL AND DIAGNOSTIC LABORATORY IMMUNOLOGY, Nov. 2003, p. 1123 1128 Vol. 10, No. 6 1071-412X/03/$08.00 0 DOI: 10.1128/CDLI.10.6.1123 1128.2003 Copyright 2003, American Society for Microbiology. All

More information

AYMERIC DE PARSEVAL* AND JOHN H. ELDER Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037

AYMERIC DE PARSEVAL* AND JOHN H. ELDER Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037 JOURNAL OF VIROLOGY, May 2001, p. 4528 4539 Vol. 75, No. 10 0022-538X/01/$04.00 0 DOI: 10.1128/JVI.75.10.4528 4539.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved. Binding of

More information

CCR5 genotype and plasma ß-chemokine concentration of Brazilian HIV-infected individuals

CCR5 genotype and plasma ß-chemokine concentration of Brazilian HIV-infected individuals Brazilian Journal of Medical and Biological Research (2002) 35: 1333-1337 The 32ccr5 allele and plasma ß-chemokine concentration ISSN 0100-879X Short Communication 1333 CCR5 genotype and plasma ß-chemokine

More information

HIV Immunopathogenesis. Modeling the Immune System May 2, 2007

HIV Immunopathogenesis. Modeling the Immune System May 2, 2007 HIV Immunopathogenesis Modeling the Immune System May 2, 2007 Question 1 : Explain how HIV infects the host Zafer Iscan Yuanjian Wang Zufferey Abhishek Garg How does HIV infect the host? HIV infection

More information

Coevolution of RANTES Sensitivity and Mode of CCR5 Receptor Use by Human Immunodeficiency Virus Type 1 of the R5 Phenotype

Coevolution of RANTES Sensitivity and Mode of CCR5 Receptor Use by Human Immunodeficiency Virus Type 1 of the R5 Phenotype JOURNAL OF VIROLOGY, Nov. 2004, p. 11807 11815 Vol. 78, No. 21 0022-538X/04/$08.00 0 DOI: 10.1128/JVI.78.21.11807 11815.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. Coevolution

More information

Received 18 December 2005/Accepted 12 January 2006

Received 18 December 2005/Accepted 12 January 2006 JOURNAL OF VIROLOGY, Apr. 2006, p. 3684 3691 Vol. 80, No. 7 0022-538X/06/$08.00 0 doi:10.1128/jvi.80.7.3684 3691.2006 Copyright 2006, American Society for Microbiology. All Rights Reserved. Genetic and

More information

An Evolutionary Story about HIV

An Evolutionary Story about HIV An Evolutionary Story about HIV Charles Goodnight University of Vermont Based on Freeman and Herron Evolutionary Analysis The Aids Epidemic HIV has infected 60 million people. 1/3 have died so far Worst

More information

Macrophage-tropic Variants Initiate Human Immunodeficiency Virus Type 1 Infection after Sexual, Parenteral, and Vertical Transmission

Macrophage-tropic Variants Initiate Human Immunodeficiency Virus Type 1 Infection after Sexual, Parenteral, and Vertical Transmission Macrophage-tropic Variants Initiate Human Immunodeficiency Virus Type 1 Infection after Sexual, Parenteral, and Vertical Transmission Ang6lique B. van't Wout,* Neeltje A. Kootstra,* Greetje A. Mulder-Kampinga,*

More information

pplementary Figur Supplementary Figure 1. a.

pplementary Figur Supplementary Figure 1. a. pplementary Figur Supplementary Figure 1. a. Quantification by RT-qPCR of YFV-17D and YFV-17D pol- (+) RNA in the supernatant of cultured Huh7.5 cells following viral RNA electroporation of respective

More information

Citation for published version (APA): Von Eije, K. J. (2009). RNAi based gene therapy for HIV-1, from bench to bedside

Citation for published version (APA): Von Eije, K. J. (2009). RNAi based gene therapy for HIV-1, from bench to bedside UvA-DARE (Digital Academic Repository) RNAi based gene therapy for HIV-1, from bench to bedside Von Eije, K.J. Link to publication Citation for published version (APA): Von Eije, K. J. (2009). RNAi based

More information

MID-TERM EXAMINATION

MID-TERM EXAMINATION Epidemiology 227 May 2, 2007 MID-TERM EXAMINATION Select the best answer for the multiple choice questions. There are 75 questions and 11 pages on the examination. Each question will count one point. Notify

More information

Received 4 December 2001/Accepted 29 April 2002

Received 4 December 2001/Accepted 29 April 2002 JOURNAL OF VIROLOGY, Aug. 2002, p. 8433 8445 Vol. 76, No. 16 0022-538X/02/$04.00 0 DOI: 10.1128/JVI.76.16.8433 8445.2002 Copyright 2002, American Society for Microbiology. All Rights Reserved. The Relationship

More information

Acquired immune deficiency syndrome.

Acquired immune deficiency syndrome. Acquired immune deficiency syndrome 491 Acquired immune deficiency syndrome. The first cases of acquired immune deficiency syndrome (AIDS) were reported in 1981 but it is now clear that cases of the disease

More information

X/01/$ DOI: /JVI Copyright 2001, American Society for Microbiology. All Rights Reserved.

X/01/$ DOI: /JVI Copyright 2001, American Society for Microbiology. All Rights Reserved. JOURNAL OF VIROLOGY, Sept. 2001, p. 8498 8506 Vol. 75, No. 18 0022-538X/01/$04.00 0 DOI: 10.1128/JVI.75.18.8498 8506.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved. Human Immunodeficiency

More information

The evolution of HIV-1 entry phenotypes as a guide to changing target cells

The evolution of HIV-1 entry phenotypes as a guide to changing target cells DOI: 10.1002/JLB.2RI0517-200R REVIEW The evolution of HIV-1 entry phenotypes as a guide to changing target cells Sarah B. Joseph 1 Ronald Swanstrom 2 1 Department of Microbiology and Immunology, University

More information

GP120: Biologic Aspects of Structural Features

GP120: Biologic Aspects of Structural Features Annu. Rev. Immunol. 2001. 19:253 74 Copyright c 2001 by Annual Reviews. All rights reserved GP120: Biologic Aspects of Structural Features Pascal Poignard, Erica Ollmann Saphire, Paul WHI Parren, and Dennis

More information

Massive infection and loss of memory CD4 + T cells in multiple tissues during acute SIV infection

Massive infection and loss of memory CD4 + T cells in multiple tissues during acute SIV infection Massive infection and loss of memory CD4 + T cells in multiple tissues during acute SIV infection Joseph J. Mattapallil 1, Daniel C. Douek 2, Brenna Hill 2, Yoshiaki Nishimura 3, Malcolm Martin 3 & Mario

More information