Immune suppression in Atlantic salmon: smoltification, sea water transfer and breeding
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1 Immune suppression in Atlantic salmon: smoltification, sea water transfer and breeding Aleksei Krasnov, Nofima FHFs fiskehelsesamling september 2015
2 Smoltifiction and breeding suppress immunity in Atlantic salmon There is space for improvement
3 Projects & methods Multifactorial disease Smolt brain Fit Smolt Collaboration with VI & NVH Transcriptomics multiple gene expression profiling: - Oligonucleotide microarray - RNA-seq
4 Disease occurrence increases after SWT Sea water transfer IPN, PD, ISA, HSMI, CMS Stress? Pathogen pressure? Management? Immunity?
5 Smoltification Endocrine (pituitary, thyroxine, cortisol) Metabolism, esp. osmoregulation Morphology Behavior
6 Smoltifiction and breeding suppress immunity in Atlantic salmon Endocrine changes, osmoregulation & immunity need much resources Breeding allocates resources to growth Competition is not in favour of defence Immune suppression remained unknown
7 Study 1 Smoltification / SWT FHF Multifactorial disease
8 FHF Multifactorial disease. Spring 2013 Constant light Week 3 Presmolt Week 6 Smolt Week 7 Seawater transfer Week 10 Seawater adaptation Sampling & analyses: gills, head kidney & intestine. Week 3 (presmolt) - reference
9
10 Cell signaling Cytokines & receptors Chemokines and receptors Eicosanoid metabolism & signaling Organ Gene Smolt SWT1 SWT2 Gill interleukin 17 isoform D Gill interleukin-1 receptor antagonist Gill interleukin Gill Small inducible cytokine A Head kidney C-C motif chemokine 19 precursor Head kidney C-C motif chemokine 20 precursor Head kidney C-C motif chemokine 21 precursor Head kidney C-X-C motif chemokine 10 precursor Head kidney Interleukin-12 subunit beta precursor intestine C-C motif chemokine 20 precursor intestine interleukin-1 receptor antagonist intestine interleukin-1 receptor type II intestine Interleukin-17 receptor A precursor intestine Small inducible cytokine A intestine Cytochrome P450 4F intestine Cytochrome P450 2K Head kidney Microsomal prostaglandin E synthase Gill Cytochrome P450 4F Head kidney Arachidonate 5-lipoxygenase Gill 33 Head kidney 19 Intestine - 30
11 Organ Gene Smolt SWT1 SWT2 Head kidney Barrier-to-autointegration factor Head kidney Gig Head kidney Gig Head kidney Radical S-adenosyl methionine domain Head kidney VHSV-inducible protein Intestine Barrier-to-autointegration factor Intestine interferon-inducible protein Gig2-like Intestine VHSV-induced protein Intestine Tyrosine-protein kinase Jak Intestine Myxovirus resistance Gill Gig Gill Barrier-to-autointegration factor Gill STAT Gill Barrier-to-autointegration factor Gill Fish virus induced TRIM Innate antiviral responses VRG Receptors, sensors Transducers Effectors Genes with unknown roles Gill 27 Head kidney 44 Intestine - 27
12 Organ Gene Smolt SWT1 SWT2 Intestine TNF receptor member 11B Intestine TNF alpha-induced protein 8-like Intestine Mitogen-activated protein kinase Intestine SAPS domain family member Intestine Sequestosome Intestine TNFAIP3-interacting protein Intestine CD265 Tumor necrosis factor receptor super Intestine TNF superfamily member 13b Head kidney SAPS domain family member Head kidney CD Head kidney TNFR superfamily member Gill Sequestosome Gill TNF superfamily member 13b Gill TNF receptor member 11B Gill TNFR associated factor Gill CD40 ligand Gill TNF decoy receptor TNFa-pathway Acute inflammation TNF receptors Signal transduction Gill 10 Head kidney 8 Intestine - 14
13 Organ Gene Smolt SWT1 SWT2 Gill Amyloid protein beta A Gill Complement component C Gill Pentraxin Gill Rhamnose-binding lectin WCL1 [Salvelinus l Gill Complement C1q C Head kidney Antimicrobial peptide 2 (LEAP2) Head kidney Complement C Head kidney P-selectin Head kidney Complement C Head kidney Complement component C Head kidney Mannose-binding protein C Intestine Serum amyloid P component Intestine Complement C1qC Intestine C1q-like adipose specific protein Intestine Rhamnose-binding lectin Intestine Complement component C8 beta Humoral & cellular effectors Acute phase proteins Antibacterial proteins Lectins Complement Oxidative burst Organ Gene Smolt SWT1 SWT2 Gill Myeloperoxidase Gill Natterin-like protein Gill Inducible nitric oxide synthase Gill Neutrophil cytosolic factor Gill Perforin Head kidney Inducible nitric oxide synthase Gill Head kidney Defensin beta 3 Head kidney Head kidney Myeloperoxidase Head kidney Lysozyme g Intestine Head kidney Neutrophil cytosolic factor Intestine Myeloperoxidase Intestine Inducible nitric oxide synthase Intestine Cytochrome b-245, beta polypeptide Intestine Perforin Intestine Neutrophil cytosolic factor
14 Organ Gene Smolt SWT1 SWT2 Gill MHC class I antigen Gill MHC class II antigen Gill Tapasin Gill TAP2b Gill MHC class I antigen Head kidney MHC class I antigen Head kidney MHC class I heavy chain Head kidney Hmha1 protein Head kidney H-2 class II histocompatibility antigen gamma Head kidney CD86 molecule Intestine MHC class I antigen Intestine MHC class I MHC class I Intestine MHC class I antigen Intestine CD Intestine H-2 class II histocompatibility antigen gamma Antigen presentation MHCI MHCII CD40, CD86 Gill 11 Head kidney 11 Intestine - 19
15 Organ Gene Smolt SWT1 SWT2 Gill CD8 beta Gill CD3epsilon Gill CD8 alpha Gill CD4-like protein Gill T cell receptor alpha Head kidney Transcription factor SOX Head kidney CD8 alpha Head kidney T-cell activation Rho GTPase Head kidney Drebrin-like protein Head kidney CD3epsilon Intestine T-cell activation Rho GTPase Intestine L-plastin Intestine Modified T cell receptor alpha Intestine CD28 T-cell-specific surface glycoprotein Intestine T-cell surface antigen CD T cells, lymphocytes CD4, CD8 Receptor CDR3 Transducers Transcription factors Effectors Gill 29 Head kidney 26 Intestine - 26
16 Organ Gene Smolt SWT1 SWT2 Gill Ig kappa chain Gill AF297518_1 immunoglobulin light chain Gill Ig kappa chain V region K Gill Ig kappa chain V-III region CLL Gill Ig kappa chain V-III region MOPC Head kidney Ig kappa chain V-IV region Len Head kidney Ig kappa chain V-III region MOPC Head kidney Ig kappa chain V-III region CLL Head kidney Transcription factor PU Head kidney Immunoglobulin heavy chain AF141606_ Intestine Ig heavy chain membrane bound Intestine Ig kappa chain V-III region CLL Intestine Ig mu chain C region Intestine Immunoglobulin lambda-like polypeptide Intestine Zinc finger_ AN1-type domain IgM HK: increase in smolt and shortly after SWT Gill transient increase shortly after SWT Intestine stable decrease Smoltification and SWT stimulate proliferation and redistribution of B cells
17 - Smoltification suppressed major immune pathways and functional groups of immune system - Exclusion: B cells & Ig - No recovery was observed at 3 weeks after SWT, further unkown - Changes were similar by character and magnitude in gill, head kidney and intestine, but different genes were affected - Results are relevant for commercial aquaculture
18 Happens always, commonly or in rare cases? Consequences for disease resistance?
19 Study 2 HSMI in parr & smolt NVI / NVH (Espen Rimstad, Maria Dahle)
20 Challenge by co-habitance Parr, FW No heart pathology, Effective clearance of PRV Smolt, SW Heart pathology HSMI Persistent infection with PRV Differences in immunity? Before and / or after infection?
21 Innate antiviral responses, antigen presentation (97 genes) Head kidney week 0 week 4 week 6 week 8 IFN-induced Stat Stat IFN-induced Stat IFN-induced VLIG Cholesterol 25-hydroxylase Ubiquitin-like protein VLIG week 0 week 4 week 6 week 8 Receptor transporting protein VLIG VLIG Fish virus induced TRIM Viperin IFIT Viperin Viperin Ubiquitin-like protein kda Ro protein Thymidylate kinase
22 T cells (72 genes) Head kidney week 0 week 4 week 6 week 8 TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region T-cell receptor V-alpha TCR-gamma constant region T-cell receptor alpha chain VR Spleen week 0 week 4 week 6 week 8 TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region
23 B cells (72 genes) Head kidney week 0 week 4 week 6 week 8 Ig kappa chain V-IV Ig tau heavy chain Ig kappa chain V-IV Ig heavy chain Ig kappa-b4 chain C region Ig kappa chain V-IV Ig kappa chain V Ig heavy chain Ig tau-2 heavy chain C-region IG heavy HC V-region Ig lambda-like Spleen week 0 week 4 week 6 week 8 Ig kappa chain V-IV Ig tau-2 heavy chain C-region Ig kappa chain V-IV Ig tau heavy chain Ig kappa chain V Ig heavy chain Ig heavy chain Ig heavy chain V-I Ig heavy chain Ig heavy chain IG heavy HC V-region
24 HSMI in parr and smolts Smoltification slightly suppressed immunity in head kidney and spleen under basal conditions Immune responses to HSMI were earlier in parr - Innate antiviral immunity: both tissues at 4 & 6 wpi - B cells: head kidney (strong) and spleen (weak) at 8 wpi Smoltification might reduce immune protection against HSMI
25 Study 3 Parr & smolt, wild salmon FreeBio Smolt Brain (Lars Ebbesson, Simon MacKenzie)
26
27 Name Gill Blood RBC Inducible nitric oxide synthase Myeloperoxidase precursor Complement C Lectin precursor Complement C1q Serine protease 1-like Allograft inflammatory factor Toxin Complement C1q-like protein Collagenase 3 precursor Differentially regulated trout protein Apolipoprotein O precursor Serum amyloid A-5 protein Matrix metalloproteinase Serum amyloid A Kidney injury molecule Gene Gill Blood RBC Cholesterol 25-hydroxylase-like pro Gelsolin precursor Hect domain and RLD Barrier-to-autointegration factor VHSV-inducible protein IFN-induced protein VHSV-induced protein Gig VHSV-induced protein RING finger protein Fish virus induced TRIM protein Vacuolar protein protein Fish virus induced TRIM VHSV-induced protein Hect domain and RLD Zinc finger_ C3HC Gill Blood RBC MHC class I MHC class I MHC class I antigen MHC class I antigen MHC class II antigen HLA class II DP alpha MHC class II alpha MHC class II alpha MHC class II alpha H-2 class I L-D alpha H-2 class II Gamma CD MHC class I antigen MHC class I antigen MHC class I alpha
28 Gill Blood RBC CD CD4-like protein CD CD81 antigen CD Cytotoxic and regulatory T cell protein Hmha1 protein interleukin SH3 and SAM domains T cell receptor alpha chain T-cell-originated protein kinase TCR-gamma constant region TCR-gamma constant region TCR-gamma constant region Wiskott-Aldrich protein homolog Gene Gill Blood RBC C-X-C motif chemokine C-C motif chemokine C-C motif chemokine C-C motif chemokine C-C motif chemokine C-C motif chemokine C-C motif chemokine C-X-C motif chemokine IFN-gamma receptor alpha IL-12 subunit beta IL IL-17 receptor A IL IL-20 receptor alpha TNF receptor 11B
29 Study 4 Lærdal & Bolaks salmon FitSmolt (Harald Takle, Sven Martin Jørgensen)
30 Heart RNA-seq: farmed vs wild Breeding for rapid growth suppressed immunity
31 Heart RNAseq: smolt vs parr Bolaks Moderate immune suppression Stimulation of Ig
32 Trend to immune suppression was seen in different - experiments & projects - fish & facilities - transcriptomic methods Advantage: confidence Drawback: - Large part of results obtained as a side product - Many questions without answer - Lack of system & stringent design
33 Questions: - Immune suppression is different by magnitude why? - Difference between strains & families? - Farming conditions & practice? - How long after SWT? - Impact on disease resistance? - Need to take measures and how?
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