Summer School: Mathematical Modeling in Cell Biology
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1 Summer School: Mathematical Modeling in Cell Biology June 10-12, 2009, BioQuant Center, Heidelberg Speakers: Grégoire Altan-Bonnet, Memorial Sloan-Kettering Cancer Center, New York Lutz Brusch, University of Dresden Utz-Uwe Haus, Research Center Dynamic Systems/MaCS, University of Magdeburg Thomas Höfer, DKFZ and BioQuant, Heidelberg Dagmar Iber, ETH Zürich, Department of Biosystems Science and Engineering, Basel Ursula Kummer, University of Heidelberg Jon Lindquist, Utz-Uwe Haus, University & ForSys Center Magdeburg Nick Monk, Centre for Integrative Systems Biology, University of Nottingham Francois Nédélec, European Molecular Biology Laboratory, Heidelberg Karsten Rippe, DKFZ and BioQuant, Heidelberg Organized by: EU-FP7 Network Systems Biology of T cell Activation (SYBILLA) ViroQuant / BioQuant Helmholtz Alliance on Systems Biology / SBCancer
2 Program 09:00-10:00 Registration Wednesday, June 10 Cell-Fate Decisions and Spatio-Temporal Patterning 10:00-11:00 Nick Monk, University of Nottingham Modelling the assignment of cell fates in the Arabidopsis root epidermis 11:00-11:30 Coffee break 11:30-12:30 François Nedelec, EMBL Heidelberg Simulation the organization of cytoskeletal fibers" 12:30-13:00 Thomas Höfer, German Cancer Research Center Introduction: Mathematical modeling in cell biology 13:00-14:00 Lunch 14:00-15:00 Ursula Kummer, University of Heidelberg Modeling, simulation and analysis of biochemical systems with COPASI 15:00-16:00 Lutz Brusch, University of Dresden Interacting GTPases dynamically establish intracellular membrane identities 16:00-16:30 Coffee break 16:30-17:30 Discussion with speakers 17:30-18:30 Short talks 17:30-17:45 Kevin Thurley, Max-Delbrück Centrum für molekulare Medizin Berlin A new method permits analytic treatment of stochastic systems with spatial organization 17:45-18:00 Andrew Angel, John Innes Centre, Norwich Modelling the epigenetic dynamics of vernalization 18:00-18:15 Antonio Politi, University of Auckland A multiscale, spatially-distributed model of asthmatic airway hyperresponsiveness 18:15-18:30 Saul Hazledine, John Innes Centre, Norwich Parameter estimation of chaotic systems 19:30- Speakers dinner 1
3 Thursday, June 11 Signaling in the Immune System 09:00-10:00 Grégoire Altan-Bonnet, Memorial Sloan-Kettering Cancer Research Center, New York System immunobiology: How integrated cytokine regulation enforces self/non-self discrimination in the immune system 10:00-10:30 Coffee break 10:30-11:30 Jon Lindquist, University & ForSys Center, Magdeburg Modeling T-cell activation 11:30-12:30 Short talks 11:30-12:00 Carsten Watzl, University of Heidelberg Decision making in natural killer cells 12:00-12:15 Luca Mariani, Humboldt University Berlin: Il-4 expression in Th2 cell differentiation: probabilistic regulation, epigenetic control and short-term memory 12:15-12:30 Aida Mehonic, University College London Computational modelling of cell-cell boundary dynamics in an epithelium comprising two distinct cell types 12:30-13:30 Lunch 13:30-14:30 Utz-Uwe Haus, University of Magdeburg Boolean models for cellular signaling: Construction, falsification and selecting dynamic alternatives 14:30-15:00 Coffee break 15:00-16:00 Discussion with speakers 16:00-22:00 Boat trip (Heidelberg Neckarsteinach) and Dinner 2
4 Friday, June 12, 2009 Chromatin-Associated Processes 09:00-10:00 Dagmar Iber, ETH Zürich Models of cell fate decisions 10:00-10:30 Coffee break 10:30-11:30 Karsten Rippe, German Cancer Research Center Determination of protein mobility and interaction parameters in living cells by fluorescence fluctuation microscopy 11:30-12:30 Thomas Höfer, German Cancer Research Center Modeling the assembly and function of chromatin-associated multiprotein complexes 12:30-13:30 Lunch 13:30-14:30 Discussion with speakers 14:30 Concluding remarks / End of workshop 3
5 Further Information: For further information visit Organization and Funding by:
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