with 0.1 mg of Superase (protease from Pfizer) per ml for 4 hr at 60 C. After incubation the mixture was heated for 7 min

Size: px
Start display at page:

Download "with 0.1 mg of Superase (protease from Pfizer) per ml for 4 hr at 60 C. After incubation the mixture was heated for 7 min"

Transcription

1 Proc. Nati. cad. Sci. US Vol. 84, pp , June 1987 Biochemistry Heparin sequences in the heparan sulfate chains of an endothelial cell proteoglycan (heparitinase I/heparitinase ih/heparinase/copolymer/disaccharide sequence) H. B. NDER*, C. P. DIETRICH*, V. BUONSSISI, ND P. COLBURN W. lton Jones Cell Science Center, Lake Placid, NY Communicated by Gordon H. Sato, January 13, 1987 BSTRCT The structure of the glycosaminoglycan chain of a heparan sulfate proteoglycan isolated from the conditioned medium of an endothelial cell line has been analyzed by using various degradative enzymes (heparitinase I, heparitinase II, heparinase, glycuronidase, sulfatases) from Flavobacterium heparinum. This proteoglycan inhibits the thromboplastinactivated pathway of coagulation; as a consequence, the catalytic conversion of prothrombin to thrombin is arrested. Heparitinase I (EC ), an enzyme with specificity restricted to the heparan sulfate portion of the polysaccharide, releases fragments with the electrophoretic mobility and the structure of heparin. Conversely, an assessment of the size and distribution of the heparan sulfate regions has been provided by the use of heparinase (EC ), which, by degrading the heparin sections of the chain, releases two segments that exhibit the structure of heparan sulfate. One of these segments is attached to the protein core. On the basis of these findings, the heparan sulfate chain can be defined as a copolymer containing heparin regions in its structure. The combined use of these enzymes has made it possible to establish the disaccharide sequence of parts of the glycosaminoglycan moiety of this proteoglycan. Heparan sulfate proteoglycans are complex macromolecules that consist of a protein backbone to which heparan sulfate chains are covalently linked (1). They are ubiquitous compounds found in a wide variety of vertebrate and invertebrate tissues (2) and are actively synthesized by cells in culture (3). These proteoglycans have been found to be present on the plasma membrane and in the extracellular matrix (4, 5) and exhibit a peculiar structural variability according to the tissue and species of origin (2, 6). Despite their wide occurrence, little is known of their biological function. They have been implicated in several biological processes such as cell-cell recognition (7), tissue differentiation (8), organization of extracellular matrices (9), and cell-matrix and cell-substrate adhesion (10). The availability of two heparitinases (11, 12) and a heparinase (EC ) from Flavobacterium heparinum (12, 13), which can be used in conjunction to elucidate the distribution and grouping in the polymeric chain of disaccharides with various degrees of sulfation and with different hexuronic acid moieties, has enabled us to undertake the structural study of a proteoglycan isolated from the conditioned medium of endothelial cell cultures that appears to be highly characteristic of this cell type. Using these enzymes, we have determined that the glycosaminoglycan chain of this proteoglycan contains heparin segments and have developed a strategy for the elucidation of the sequence of the disaccharide repeating units that may be applicable to the study of other structurally related compounds. The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C solely to indicate this fact. MTERILS ND METHODS Substrates, Enzymes, and Materials. Heparin from bovine intestinal mucosa and heparan sulfate from bovine pancreas were gifts from P. Bianchini (Opocrin Research Laboratories, Modena, Italy). Chondroitin 4- and 6-sulfates were purchased from Miles. Heparinase, heparitinases, disaccharide sulfoesterase, and glycuronidase were prepared from induced F. heparinum cells, and mono-, di-, and tetrasaccharides were prepared from heparin and heparan sulfates as described (11-13). Ethylenediamine (1,2-diaminoethane) was purchased from ldrich. L-[ring-2,3,4,5,6-3H]phenylalanine (106.3 Ci/mmol; 1 Ci = 37 GBq), D-[1,6-3H(N)]glucosamine hydrochloride (42.5 Ci/mmol), and carrier-free [35S]sulfuric acid were purchased from New England Nuclear. Preparation of the Heparan Sulfate Proteoglycan (HSPG) Synthesized by Endothelial Cell Cultures. n established endothelial cell line derived from rabbit aorta (14) was used for these studies. To obtain proteoglycans labeled in their carbohydrate moieties, postconfluent cell cultures were incubated for hr in F-12 tissue culture medium supplemented with 5% fetal bovine serum and either 150 uci of carrier free [35S]sulfuric acid or 10,uCi of [35S]sulfuric acid and 10,Ci of [3H]glucosamine per ml. Proteoglycans labeled in their protein core were obtained by supplementing the culture medium with 10,Ci of [3H]phenylalanine per ml. The HSPG was isolated from the conditioned medium by Sepharose CL-6B gel filtration followed by ion-exchange chromatography on DEE-cellulose as described (15). When indicated, protein-free heparan sulfate glycosaminoglycan chains were prepared from the proteoglycan by incubation with 0.1 mg of Superase (protease from Pfizer) per ml for 4 hr at 60 C. fter incubation the mixture was heated for 7 min at 100 C, and the radiolabeled glycosaminoglycan was precipitated with 2 volumes of methanol at -20 C in the presence of carrier heparan sulfate. Enzymatic Degradation of the Glycosaminoglycan Chains of the HSPG. typical incubation mixture contained 0.1 unit of enzymes, x 103 cpm of HSPG with 50,ug each of heparan sulfate and heparin, and other additions as indicated in 0.05 M ethylenediamine acetate buffer (ph 7.0) in a final volume of 30 ul. The incubation mixtures were spotted in Whatman no. 1 paper and subjected to chromatography in isobutyric acid/1 M NH3, 5:3 (vol/vol), or isobutyric acid/ 1.25 M NH3, 5:3.6, for 48 hr. Electrophoresis of the degradation products was performed in Whatman 3MM paper in 0.25 M (NH4)HCO3 buffer (ph 8.5). The unsaturated pro- bbreviations: Ido, iduronic acid; Ido, 0-(4-deoxy-hex-4-enopyranosyliduronic acid; Ido-2S, Ido 2-sulfate; Glc, glucuronic acid; Glc, 0-(4-deoxy-hex-4-enopyranosylglycuronic acid; GlcNS, 2-sulfamino-D-glucose; GlcNS-6S, GlnNS 6-sulfate; Gln- Nc, 2-acetamido-D-glucose; GlcNc-6S, GlcNc 6-sulfate; (1-4), glycosidic linkage (1--4); HSPG, endothelial cell heparan sulfate proteoglycan. *On leave from Departamento Bioquimica, Escola Paulista de Medicina, C.P Sao Paulo, S.P. Brazil.

2 3566 Biochemistry: Nader et Proc. Natl. cad. Sci. US 84 (1987) * _ HEPRIN _ CHONDROrTIN SULFTE.* HEPRN SULFTE - ig~c(1-4)glcnc-6s K GIc(1-4)GIcNS GIcNS-6S from e Ido01-4)GlcNS-6S ORIGIN _SUPERSE HTSE I HEPSE NONE ENYME FIG. 1. Electrophoretic behavior of HSPG and its heparinase and heparitinase I degradation products. bout 20,000 cpm of [31S]HSPG was incubated with Superase (lanes +), a proteolytic enzyme, or with buffered solution containing protease inhibitors (lanes -) in the presence of 50,ug of carrier heparan sulfate for 2 hr at 60 C in a final volume of 20.l. The incubation mixtures were then heated at 100 C for 7 min. To the mixtures, 0.1 unit ofheparinase (HEPSE), 0.1 unit of heparitinase I (HTSE I), or buffer (NONE) were added, and the mixtures were incubated further for 3 hr in 0.05 M ethylenediamine acetate buffer (ph 7.0) at 30 C in a final volume of 30,ul. liquots (5,ul) were applied to the agarose gel and subjected to electrophoresis in 0.05 M sodium phosphate buffer (ph 8.5) for 30 min at 120 V. fter fixing and staining, a radioautogram was prepared by exposing the dried gel to x-ray film. Lane St shows a standard mixture of heparan sulfate, chondroitin sulfate, and heparin. ducts formed were detected by short-wave UV lamp. The radioactive 35S-labeled products were located by exposure of the chromatograms to Kodak x-ray film (SB-5) for 3-15 days. They were quantitated by assaying the paper containing the radioactive compounds in 0.5% 2,5-diphenyloxazole in toluene in a liquid scintillation spectrometer. One of the products, 0-(4-deoxy-hex-4-enopyranosylglycuronic acid)-(1-. 4)-2-acetamido-D-glucose [Glc(1-4)GlcNc] contains only [3H]glucosamine and was located with the help of the same disaccharide formed from the carrier heparan sulfate by action of heparitinase I (see below). Fractionation of HSPG Degradation Products Prepared by the ction of the Enzymes. bout 50,000 cpm of [3H]glucosamine and [35S]HSPG with carriers heparin and heparan sulfate (100,g) were incubated with 0.1 unit of heparinase in the presence of 0.02 M MnCl2 or heparitinase I in a final volume of 50 l as described above. fter incubation 500 jig of heparan sulfate was added to the mixture and applied to a Sephadex G-50 superfine column (1 x 120 cm) previously equilibrated with 1 M acetic acid. The products were eluted from the column in 1-ml fractions with 1 M acetic acid. liquots of the different fractions (see below) were used to determine the amount of radioactivity present, and the different peaks obtained were combined, lyophilized, and subjected to enzymatic analyses. Other Methods. N-desulfation of [35S]HSPG and [3H]glucosamine-labeled HSPG was performed in 0.04 M HCl at 100 C for 2 hr in the presence of carrier heparan sulfate. garose gel electrophoresis in phosphate buffer was performed as described (16). RESULTS Most of the structural studies reported in this paper are based on the specificities of the enzymes prepared from Flavobacterium heparinum. Their action has been studied in detail by different laboratories (for a review, see ref. 17). Briefly, the heparinase acts upon glucosaminido-iduronic acid link- Ido-2S(1-4)GlcNS + * a.gic(1-4)glcns-6s * V -.1Ido-2S(1-4)GlcNS-6S 9 - Unknown _ K_ Ido-2S(1-4)GlcNS-6Sj *g L Glc(1-4)GlcNS-6S Origin FIG. 2. Degradation products formed from [35S]HSPG by action of heparinase, heparitinase II, and heparitinase I. bout 20,000 cpm of [35S]HSPG in the presence of 100,ug of carrier heparan sulfate were incubated with 0.1 unit of heparitinase I (lane 1) or heparinase/glycuronidase (lanes 2 and 3) or in the absence of enzymes (lane 4) in 0.05 M ethylenediamine acetate buffer (ph 7.0) in a final volume of 30 1.l for 4 hr at 300C. fter incubation, the mixtures were heated at 100'C for 1 min, and 0.1 unit of heparitinase II was added to lanes 1 and 3. The mixtures were incubated an additional 4 hr at 30 C. The incubation mixtures were applied to Whatman no. 1 filter paper and chromatographed for 48 hr with isobutyric acid/1.25 M NH3, 5:3.6 (vol/vol), as the descending solvent. radioautogram was then prepared from the chromatogram with x-ray film. ages where the glucosamine is sulfated at the 2 position. The heparitinase I is specific for N-acetyl or N-sulfate glucosaminido-glucuronic acid linkages. This enzyme only acts on heparan sulfate regions where the N-acetyl or N-sulfate glucosamine is not sulfated at the 6 position. The heparitinase II is a relatively nonspecific enzyme acting preferentially upon glucosaminido-glucuronic acid linkages where the N- acetyl or N-sulfate glucosamine is sulfated at the 6 position. None of the enzymes act on N-desulfated glucosaminidouronic acid linkages. lso, the disaccharide sulfoesterase and glycuronidase were used to distinguish two types of disulfated disaccharides formed by action of heparinase upon HSPG-O-(4-deoxy-hex-4-enopyranosyliduronic acid 2-sulfate)-(1--4)-2-sulfamino-D-glucose [Ido-2S(1-4)GlcNS] and 0-(4-deoxy-hex-4-enopyranosyliduronic acid)-(1-4)- GlcNS 6-sulfate [Ido(1-4)GlcNS-6S]. Only Ido-2S(1-4) GlcNS is a substrate for the sulfatase producing Ido(1-4) GlcNS. The Ido(1-4)GlcNS-6S is a substrate for the glycuronidase producing GlcNS-6S. For further details see refs and 17. Fragmentation of HSPG by Heparinase, Heparitinase I, and Heparitinase II. The electrophoretic migration of the purified HSPG (before and after proteolysis) as well as the oligosaccharide products formed from this compound by heparinase and heparitinase I are shown in Fig. 1. The heparitinase I oligosaccharides have the same electrophoretic migration as

3 Biochemistry: Nader et al. Proc. Natl. cad. Sci. US 84 (1987) 3567 Table 1. Disaccharides formed by action of heparitinases upon heparinase degradation products of HSPG Mole ratio of disaccharide (disacch.)/fragmentt Ido-2S- Ido-2S- Ido- Glc- Glc- Glc- Glc- Mol of fragment/ (1-4)- (1-4)- (1-4)- (1-4)- (1-4)- (1-4)- (1-4)- Fragment mol of heparan sulfate* GlcNS-6S GlcNS GlcNS-6S GlcNS-6S GlcNc-6S GlcNS GlcNc Oligo Oligo Tetra Tetra Disacch Disacch Disacch *Moles of fragment per mole of heparan sulfate. tno value indicates <0.3 mol/mol of fragment. heparin in this system, whereas the oligosaccharides produced by heparinase have about the same migration of the 31 K.3 intact HSPG. No significant changes in migration were 2' 2 observed by proteolytic treatment of the compounds. These initial experiments suggested that HSPG is a copolymer containing a heparin-like oligosaccharide in a 1 heparan sulfate ' -1 chain. Further analysis of the heparin portion of the glycosaminoglycan chain was performed by using the combined action of,ft n E. I WI -- _ Ln heparinase and glycuronidase. The small molecular weight products formed by action of the enzymes upon [35S]HSPG are shown in Fig. 2. Tetrasaccharides, tri-, and disulfated B OLK;O TETR disaccharides and GlcNS-6S [resulting from Ido(1-4) GlcNS-6S by action of the glycuronidase] are formed from ; ;; HSPG by action of a mixture of these two enzymes. These c4 *0.8 results imply that the heparan sulfate chain of the proteoglycan contains iduronic acid in different regions of its structure 1-80 cv, VĒa *o as in heparin. The trisulfated disaccharide [Ido-2S(1-4) 0..4 x GlcNS-6S], characteristic of heparin, accounts for >10o of U the disaccharides that compose this proteoglycan (Table 1) E. U By combining these enzymes with heparitinases I and II, a decrease of the tetrasaccharides and an increase of tri- and disulfated disaccharides are observed besides the formation of other products (Fig. 2). To gather information on the length and possible distribution of these disaccharide units in HSPG, this material was labeled with [3H]glucosamine and [35S]sulfuric acid, subjected to the action of heparinase, and fractionated by molecularsieving chromatography. Several peaks were obtained after fractionation on Sephadex G-50 (Fig. 3B): two peaks with elution volumes corresponding to two oligosaccharides of Mr =6500 and Mr =3000 and five major peaks with the same elution profiles of tetra- and disaccharides. The fractions containing these different compounds were pooled and subjected to degradation with heparitinases I and II. The types and molar ratios of the disaccharides obtained from each one of the peaks are shown in Table 1. Sequence of the Oligo- and Tetrasaccharides Obtained from HSPG by Heparinase Degradation. Table 1 shows that oligosaccharide 1 contains -1 mol of Ido-2S(1-4)GlcNS-6S, 1 mol of Glc(1-4)GlcNS-6S, and 6 mol each of Glc(1-4) GlcNc and Glc(1-4)GlcNS. The sum of these disaccharides would give a Mr of 6000, which is close to the molecular weight value obtained for this oligosaccharide by gel filtration chromatography with Sephadex G-50. Likewise, the oligosaccharide 2 contains approximately 1 mol each of Ido- 2S(1-4)GlcNS and Glc(1-4)GlcNS-6S, 2 mol of Glc(1-+4)- GlcNc 6-sulfate [Glc(1-4)GlcNc-6S], and 3 mol of Glc(1-4)GlcNS. The sum of these disaccharides gives a Mr of This again is in close agreement with the elution profile obtained for this oligosaccharide by molecular-sieving chromatography. w z n 4(0 0 cn &-l _R~~~V I -..., 4 - C ~~~HEX 00L - 3- D DISCCH ~ ~~ ~ ~ ~ ~ ~ ~ ~ ~ ~ FRCTION NUMBER FIG. 3. Fractionation by Sephadex G-50 chromatography of [3H]glucosamine/[35S]-labeled HSPG degradation products formed by the action of the different enzymes. The experiments were performed as described. () Control, HSPG. (B) HSPG with heparinase. (C) Oligosaccharide 1 (fractions from B) with heparitinase I. (D) HSPG with heparitinase I. U, uncharacterized peak; disacch., disaccharide w U., - cv, CD

4 3568 Biochemistry: Nader et al. o-cj Ido-2S-GlcNS-6S OLIGO 1 Ido-2S-GlcNS 5 6 OLIGO 2 ^ Ido-GlcNS-6S * GIc-GlcNS-6S TETR 1 - GIc-GlcNc-6S TETR Y GIc-GIcNS DISCCH 1 X *-0 Glc-GlcNc DISCH?;G DISCCH 3 FIG. 4. Structure of HSPG degradation products formed by action of heparinase. Designations of the glycosidic linkage have been omitted. The uronic acid of the disaccharide located at the nonreducing end is unsaturated. The results shown in Table 1 and Fig. 3 together with the knowledge of the specificity of the heparinase and heparitinases enable one to order the different disaccharides in a specific sequence as shown in Fig. 4. Since the heparinase acts upon glucosaminido-iduronic acid linkages, the unsaturated iduronic acid-containing disaccharides will be located at the nonreducing end of all the fragments. In the case of the tetrasaccharides, the subsequent disaccharide units are at the reducing end as shown in Fig. 4. To assign the next disaccharide unit from the nonreducing end of oligosaccharide 1, the compound was degraded with heparitinase I [which degrades the regions containing Glc(1-4)GlcNS and Glc(1-4)GlcNc] and subjected to molecularsieving chromatography (Fig. 3C). This oligosaccharide was completely degraded to small fragments and disaccharides. The fractions containing the hexasaccharide were combined, further degraded by heparitinase II, and subjected to chromatography on paper. Three disaccharides were identified-namely, Ido-2S(1-4)GlcNS-6S, Glc(1-4)GlcNS-6S, and Glc(1-4)GlcNS in about the same molar ratios. This indicates that Glc(1-4)GlcNS-6S is the vicinal disaccharide of Ido-2S(1-4)GlcNS-6S and is followed by Glc(1-4)GlcNS, which contains the linkage susceptible to heparitinase I (Fig. 4). The disaccharide peak proved to be, by paper chromatography, a mixture of Glc(1-4)GlcNc and Glc(1-4)GlcNS. third smaller peak was eluted between the hexa- and disaccharides (Fig. 3C), and it was not degraded by any of the enzymes, remaining unidentified. To establish the order of the two remaining disaccharide groups, Glc(1-4)GlcNc and Glc(1-4)GlcNS of oligosaccharide 1, the HSPG was N-desulfated by mild acid hydrolysis and subjected to degradation with heparitinase I. The amounts of Glc(1-4)GlcNc formed from this HSPG were comparable to the amounts of this disaccharide formed from a nonhydrolyzed HSPG. This indicates that these disaccharides are clustered in the molecule as shown in Fig. 4. If this were not the case, either no degradation should occur, or N-desulfated tetra- and oligosaccharides should be produced. These results also lead to the conclusion that the remaining disaccharides [Glc(1-4)GlcNS] also have to be vicinal to each other as shown in Fig. 4. O-f0 Proc. Natl. cad. Sci. US 84 (1987) Regarding oligosaccharide 2, the order of Glc(1-4)GlcNc- 6S and Glc(1-4)GlcNS-6S could not be established. Oligosaccharides Obtained from HSPG by Heparitinase I Degradation. The results of the chromatographic analysis of the products formed from HSPG by heparitinase I are shown in Fig. 3D. Two main peaks were eluted at the volumes corresponding to Mr 3500 and 3000 plus another main peak in the disaccharide region. s expected, analyses of the disaccharide peak by paper chromatography revealed a mixture of Glc(1-4)GlcNS and Glc(1-4)GlcNc. The fractions containing the two main oligosaccharides were combined and degraded by heparinase followed by heparitinase II. The type and amount of products formed from these compounds by the combined action of the enzymes is shown in Table 2. Heparin-Like Regions of HSPG. The results shown in Fig. 3D suggests that the oligosaccharides with Mr 3500 and 3000 contain the heparin-like regions of HSPG. In an attempt to obtain information on the possible sequence of these two segments, the oligo-, tetra-, and disaccharides obtained by heparinase degradation of HSPG (Fig. 4) were assembled in such a way as to include the two main oligosaccharide products formed by the action of heparitinase I from HSPG (Fig. 3D). The combination that best approaches the disaccharide composition of the oligosaccharides (Table 2) together with the sites of action of heparinase and heparitinase I is shown in Fig. 5. In this model two oligosaccharides with Mr 4900 and 4500 could be produced by the action of the heparitinase I. The arrangement of the different tetra- and disaccharides used in the assembly of Fig. 5 is aleatoty, and their proper order could not be established by the present methodology. Distance of Heparin Sequence from the Protein Core of HSPG. To answer this question, HSPG labeled in the protein core with [3H]phenylalanine was degraded with heparitinase I or heparinase and subjected to analysis by agarose gel electrophoresis. s shown earlier (Fig. 1) in this system, the intact proteoglycan migrates with an electrophoretic mobility similar to that of the heparan sulfate chains. If the heparin segment is separated from the protein core by a heparan sulfate type of structure of a sizable length, treatment with heparinase should affect the mobility of the protein core only to a limited extent. Conversely, treatment with heparitinase I should effectively decrease the amount of tritium label in the heparan sulfate area of the agarose gel if the segment of glycosaminoglycan close to the glycopeptide linkage is represented by an N-acetylated region typical of heparan sulfate. The results of these experiments have shown that, only after heparitinase I degradation, there is a marked reduction of the amount of label present in the heparan sulfate region, suggesting that the heparin oligosaccharides are separated from the core protein by a heparan sulfate region. DISCUSSION Iduronic acid-containing tri- and disulfated disaccharides and tetra- and pentasulfated tetrasaccharides typical of heparin are also conspicuously present in the HSPG of rabbit endothelial cells in culture. s judged by the amounts of unsaturated products formed by the action of heparinase Table 2. Disaccharide products formed from heparitinase I-digested oligosaccharides (oligo.) by action of heparinase and heparitinase II Mole ratio of disaccharide/fragment Ido-2S- Ido-2S- Ido- Glc- Glc- Glc- (1-4)- (1-4)- (1-4)- (1-4)- (1-4)- (1-4)- Fragment GlcNS-6S GlcNS GlcNS-6S GlcNS-6S GlcNc-6S GlcNS Oligo Oligo

5 Biochemistry: Nader et HEPRMNSE I HEPRITINSE I Proc. Natl. cad. Sci. US 84 (1987) 3569 HEPRITINSE I T I T HEPRINSE 4,870 r t t HEPRINSE FIG. 5. Proposed structure of HSPG and sites of action of heparinase and heparitinase I. R, protein core. Symbols are the same as in Fig. 4, and the molecular weights are indicated. upon HSPG, -20% of the molecule contains iduronic acid residues. mong >20 heparan sulfates from different mammalian and invertebrate tissues and species analyzed by the same methodology (2, 6), this is the only heparan sulfate extensively susceptible to heparinase. The iduronic acidcontaining disaccharides are clustered in two sulfate-rich oligosaccharide areas separated from the protein core by a N-sulfated and N-acetylated region. The specificity of action of heparinase and heparitinase I has made it possible to order most of the disaccharides that compose the HSPG in a specific sequence as shown in Fig. 5. The total number of disaccharides found in these analyses suggests that the heparan sulfate has a Mr of -15,000. Nevertheless, the average molecular weight of the intact heparan sulfate chain (after proteolysis or P-elimination) is in the order of 55,000 (unpublished results). This implies that four of the units shown in Fig. 5 should constitute the heparan sulfate chain. t present no information is available about how these four units are assembled. Perhaps some clues could be obtained when the structure of the sulfated unknown product formed by the joint action of the enzymes upon HSPG (Figs. 2 and 3C) is obtained. This compound accounts for 3% of the total sulfated products formed by the action of the enzymes (about 1 mol of compound per mol of the Mr 15,000 unit), has an elution position in Sephadex of a disaccharide, and is not degraded by the glycuronidase or the disaccharide sulfoesterase. This could be an indication that this "disaccharide" is situated at the nonreducing end of the chains, since these enzymes do not act upon saturated disaccharides. If this alternative proves to be correct, we have to consider the possibility that each of the four units is linked directly to a peptide core resistant to proteolysis and a-elimination. lternatively, our data do not rule out the possibility that the carbohydrate chains are branched. Iduronic acid-containing disaccharides have been reported to be present in heparan sulfate species obtained from different tissues (18, 19) and from cultured microvascular endothelial cells (20). In these microvessel-derived cultures, as it had been reported for the established endothelial cell line (15, 21) used in the present studies, heparan sulfate proteoglycans exhibited anticoagulant activity. The methodology outlined in this report may prove useful for the characterization of the structural features of the glycosaminoglycan chain responsible for biological activity. 4,460 t This work was aided by grants from Fundacao de mparo a Pesquisa do Estado de Sao Paulo, Conselho Nacional de Desenvolvimento Cientifico e Tecnol6gico, Brazil, and by grants from the Council for Tobacco Research (no. 1414) and R. J. Reynolds, Inc. 1. Roden, L. (1980) in The Biochemistry of Glycoproteins and Proteoglycans, ed. Lennarz, W. J. (Plenum, New York), pp Nader, H. B., Ferreira, T. M. P. C., Paiva, J. F., Medeiros, M. G. L., Jer6nimo, S. M. B., Paiva, V. M. P. & Dietrich, C. P. (1984) J. Biol. Chem. 259, Dietrich, C. P. & Montes de Oca, M. (1970) Proc. Soc. Exp. Biol. Med.. 134, Kraemer, P. M. (1971) Biochemistry 10, Gowda, D. C., Bhavanandan, V. P. & Davidson, E.. (1986) J. Biol. Chem. 261, Dietrich, C. P., Nader, H. B. & Straus,. H. (1983) Biochem. Biophys. Res. Commun. 111, Dietrich, C. P., Sampaio, L. O., Toledo, 0. M. S. & Cassaro, C. M. F. (1977) Biochem. Biophys. Res. Commun. 75, Kinoshita, S. & Saiga, H. (1979) Exp. Cell Res. 123, Ogston,. G. (1970) in Chemistry and Molecular Biology of the Intracellular Matrix, ed. Balazs, E.. (cademic, New York), Vol. 3, pp Laterra, J., nsbacher, R. & Culp, L.. (1980) Proc. Natl. cad. Sci. US 77, Silva, M. E., Dietrich, C. P. & Nader, H. B. (1976) Biochim. Biophys. cta 437, Silva, M. E. & Dietrich, C. P. (1975) J. Biol. Chem. 250, Dietrich, C. P., Silva, M. E. & Michelacci, Y. M. (1973) J. Biol. Chem. 248, Buonassisi, V. & Venter, J. C. (1976) Proc. Natl. cad. Sci. US 73, Buonassisi, V. & Colburn, P. (1982) nn. N. Y. cad. Sci. 401, Jaques, L. B., Ballieux, R. E., Dietrich, C. P. & kavanagh, L. W. (1968) Can. J. Physiol. Pharmacol. 46, Dietrich, C. P., Michelacci, Y. M. & Nader, H. B. (1980) in Mechanism of Saccharide Polymerization and Depolymerization, ed. Marshall, J. J. (cademic, New York), pp Cifonelli, J.. & Dorfman,. (1960) J. Biol. Chem. 235, Linker,. & Hovingh, P. (1974) Carbohydr. Res. 37, Marcum, J.. & Rosenberg, R. D. (1985) Biochem. Biophys. Res. Commun. 126, Colburn, P. & Buonassisi, V. (1982) Biochem. Biophys. Res. Commun. 104, , and erratum (1982) 105, 791.

Evaluation of critical groups required for the binding of heparin

Evaluation of critical groups required for the binding of heparin Proc. Natl. Acad. Sci. USA Vol. 81, pp. 1030-1034, February 1984 Biochemistry Evaluation of critical groups required for the binding of heparin to antithrombin (mucopolysaccharide/oligosaccharide/anticoagulant

More information

Medical Biochemistry and Molecular Biology CARBOHYDRATE CHEMISTRY. By Hussein Abdelaziz

Medical Biochemistry and Molecular Biology CARBOHYDRATE CHEMISTRY. By Hussein Abdelaziz Medical Biochemistry and Molecular Biology CARBOHYDRATE CHEMISTRY 2 By Hussein Abdelaziz Disaccharides Disaccharides consist of two sugars joined by an O-glycosidic bond. The most abundant disaccharides

More information

189,311, , ,561, ,639, ,679, Ch13; , Carbohydrates. Oligosaccharides: Determination of Sequence

189,311, , ,561, ,639, ,679, Ch13; , Carbohydrates. Oligosaccharides: Determination of Sequence Lecture (2//7) Reading: Chs4,6,8,0,4,6,7,8; 28-29, 89,,77-80,555-557,56,62-622,69,662-66,679, 69-694 Ch; 497-50, 507-54 Problems: Ch (text); 5,6,9,0,22,24 Ch7 (study-guide: applying); 4 Ch7 (study-guide:

More information

Glycosaminoglycans: Anionic polysaccharide chains made of repeating disaccharide units

Glycosaminoglycans: Anionic polysaccharide chains made of repeating disaccharide units Glycosaminoglycans: Anionic polysaccharide chains made of repeating disaccharide units Glycosaminoglycans present on the animal cell surface and in the extracellular matrix. Glycoseaminoglycans (mucopolysaccharides)

More information

An aldose contains an aldehyde functionality A ketose contains a ketone functionality

An aldose contains an aldehyde functionality A ketose contains a ketone functionality RCT Chapter 7 Aldoses and Ketoses; Representative monosaccharides. (a)two trioses, an aldose and a ketose. The carbonyl group in each is shaded. An aldose contains an aldehyde functionality A ketose contains

More information

Glycosaminoglycans, Proteoglycans, and Glycoproteins

Glycosaminoglycans, Proteoglycans, and Glycoproteins Glycosaminoglycans, Proteoglycans, and Glycoproteins Presented by Dr. Mohammad Saadeh The requirements for the Pharmaceutical Biochemistry I Philadelphia University Faculty of pharmacy I. OVERVIEW OF GLYCOSAMINOGLYCANS

More information

Most mammalian cells are located in tissues where they are surrounded by a complex extracellular matrix (ECM) often referred to as connective tissue.

Most mammalian cells are located in tissues where they are surrounded by a complex extracellular matrix (ECM) often referred to as connective tissue. GLYCOSAMINOGLYCANS Most mammalian cells are located in tissues where they are surrounded by a complex extracellular matrix (ECM) often referred to as connective tissue. The ECM contains three major classes

More information

BIOCHEMISTRY LECTURES BY RASAQ, N.O

BIOCHEMISTRY LECTURES BY RASAQ, N.O BIOCHEMISTRY LECTURES BY RASAQ, N.O LECTURE CONTENT INTRODUCTION POLYSACCHARIDES STRUCTURAL POLYSACCHARIDES: CELLULOSE AND CHITIN BACTERIA CELL WALLS PEPTIDOGLYCAN PENICILLIN AND β-lactam ANTIBIOTICS AND

More information

Significance and Functions of Carbohydrates. Bacterial Cell Walls

Significance and Functions of Carbohydrates. Bacterial Cell Walls Biochemistry 462a - Carbohydrate Function Reading - Chapter 9 Practice problems - Chapter 9: 2, 4a, 4b, 6, 9, 10, 13, 14, 15, 16a, 17; Carbohydrate extra problems Significance and Functions of Carbohydrates

More information

SYNOPSIS STUDIES ON THE PREPARATION AND CHARACTERISATION OF PROTEIN HYDROLYSATES FROM GROUNDNUT AND SOYBEAN ISOLATES

SYNOPSIS STUDIES ON THE PREPARATION AND CHARACTERISATION OF PROTEIN HYDROLYSATES FROM GROUNDNUT AND SOYBEAN ISOLATES 1 SYNOPSIS STUDIES ON THE PREPARATION AND CHARACTERISATION OF PROTEIN HYDROLYSATES FROM GROUNDNUT AND SOYBEAN ISOLATES Proteins are important in food processing and food product development, as they are

More information

preparation which is available contains an oligo-1,4-0 1,4-glucantransferase

preparation which is available contains an oligo-1,4-0 1,4-glucantransferase THE PROPERTIES OF AN OLIGO-1,4 -- 1,4-GLUCANTRANSFERASE FROM ANIMAL. TISSUES* BY DAVID H. BROWN AND BARBARA ILLINGWORTH DEPARTMENT OF BIOLOGICAL CHEMISTRY, WASHINGTON UNIVERSITY SCHOOL OF MEDICINE, SAINT

More information

Adaptation of FACE methodology for microanalysis of total hyaluronan and chondroitin sulfate composition from cartilage

Adaptation of FACE methodology for microanalysis of total hyaluronan and chondroitin sulfate composition from cartilage Glycobiology vol. 10 no. 3 pp. 283 293, 2000 Adaptation of FACE methodology for microanalysis of total hyaluronan and chondroitin sulfate composition from cartilage Anthony Calabro 1, Vincent C.Hascall

More information

SUPPLEMENTARY MATERIAL

SUPPLEMENTARY MATERIAL SUPPLEMENTARY MATERIAL Purification and biochemical properties of SDS-stable low molecular weight alkaline serine protease from Citrullus Colocynthis Muhammad Bashir Khan, 1,3 Hidayatullah khan, 2 Muhammad

More information

130327SCH4U_biochem April 09, 2013

130327SCH4U_biochem April 09, 2013 Option B: B1.1 ENERGY Human Biochemistry If more energy is taken in from food than is used up, weight gain will follow. Similarly if more energy is used than we supply our body with, weight loss will occur.

More information

Periodate Oxidation of Glycopeptides from Ovalbumin*

Periodate Oxidation of Glycopeptides from Ovalbumin* The Journal of Biochemistry, Vol. 60, No. 3, 1966 Periodate Oxidation of Glycopeptides from Ovalbumin* By MAYUMI MAKING and IKUO YAMASHINA (From the Department of Biological Chemistry, Faculty of Pharmaceutical

More information

Distribution of molecular species of sphingomyelins in different parts of bovine digestive tract

Distribution of molecular species of sphingomyelins in different parts of bovine digestive tract Distribution of molecular species of sphingomyelins in different parts of bovine digestive tract M. E. Breimer Membrane Biochemistry Group, Department of Medical Biochemistry, University of Giiteborg,

More information

UNIT 4. CARBOHYDRATES

UNIT 4. CARBOHYDRATES UNIT 4. CARBOHYDRATES OUTLINE 4.1. Introduction. 4.2. Classification. 4.3. Monosaccharides. Classification. Stereoisomers. Cyclic structures. Reducing sugars. Sugar derivatives 4.4. Oligosaccharides. Disaccharides.

More information

A. Lipids: Water-Insoluble Molecules

A. Lipids: Water-Insoluble Molecules Biological Substances found in Living Tissues Lecture Series 3 Macromolecules: Their Structure and Function A. Lipids: Water-Insoluble Lipids can form large biological molecules, but these aggregations

More information

Topic 4 - #2 Carbohydrates Topic 2

Topic 4 - #2 Carbohydrates Topic 2 Topic 4 - #2 Carbohydrates Topic 2 Biologically Important Monosaccharide Derivatives There are a large number of monosaccharide derivatives. A variety of chemical and enzymatic reactions produce these

More information

Quantitation and Identification of Urine Mucopolysaccharides. George Gray MetBioNet Workshop 2008

Quantitation and Identification of Urine Mucopolysaccharides. George Gray MetBioNet Workshop 2008 Quantitation and Identification of Urine Mucopolysaccharides George Gray MetBioNet Workshop 2008 The Big Questions What are we measuring? Where does it come from? How do we measure it? What are we measuring?

More information

Characterization of a Heparan Sulfate and a Peculiar Chondroitin 4-Sulfate Proteoglycan from Platelets

Characterization of a Heparan Sulfate and a Peculiar Chondroitin 4-Sulfate Proteoglycan from Platelets THE JOURNAL OF BOLOGCAL CHEMSTRY (c) 99 by The American Society for Biochemistry and Molecular Biology, nc Vol. 266, No. 6, ssue of June 5, pp. 058-0523,99 Printed in U. S. A. Characterization of a Heparan

More information

J. Biosci., Vol. 3, Number 4, December 1981, pp Printed in India.

J. Biosci., Vol. 3, Number 4, December 1981, pp Printed in India. J. Biosci., Vol. 3, Number 4, December 1981, pp. 343-360. Printed in India. Studies on carbohydrate moieties of the glycoprotein, glucoamylase II of Aspergillus niger: Nature of carbohydratepeptide linkage

More information

Glycosaminoglycans affect the interaction of human plasma kallikrein with plasminogen, factor XII and inhibitors

Glycosaminoglycans affect the interaction of human plasma kallikrein with plasminogen, factor XII and inhibitors Brazilian Journal of Medical and Biological Research (2003) 36: 1055-1059 GAGs affect human plasma kallikrein activity and inhibition ISSN 0100-879X 1055 Glycosaminoglycans affect the interaction of human

More information

Lecture Series 2 Macromolecules: Their Structure and Function

Lecture Series 2 Macromolecules: Their Structure and Function Lecture Series 2 Macromolecules: Their Structure and Function Reading Assignments Read Chapter 4 (Protein structure & Function) Biological Substances found in Living Tissues The big four in terms of macromolecules

More information

Lecture Series 2 Macromolecules: Their Structure and Function

Lecture Series 2 Macromolecules: Their Structure and Function Lecture Series 2 Macromolecules: Their Structure and Function Reading Assignments Read Chapter 4 (Protein structure & Function) Biological Substances found in Living Tissues The big four in terms of macromolecules

More information

Ubiquitin-aldehyde: A general inhibitor of ubiquitinrecycling

Ubiquitin-aldehyde: A general inhibitor of ubiquitinrecycling Proc. Nati. Acad. Sci. USA Vol. 84, pp. 1829-1833, April 1987 Biochemistry Ubiquitin-aldehyde: A general inhibitor of ubiquitinrecycling processes (protein breakdown/isopeptidase/c-terminal hydrolase)

More information

Heparin Sodium ヘパリンナトリウム

Heparin Sodium ヘパリンナトリウム Heparin Sodium ヘパリンナトリウム Add the following next to Description: Identification Dissolve 1 mg each of Heparin Sodium and Heparin Sodium Reference Standard for physicochemical test in 1 ml of water, and

More information

Abdullah zurayqat. Bahaa Najjar. Mamoun Ahram

Abdullah zurayqat. Bahaa Najjar. Mamoun Ahram 9 Abdullah zurayqat Bahaa Najjar Mamoun Ahram Polysaccharides Polysaccharides Definition and Structure [Greek poly = many; sacchar = sugar] are complex carbohydrates, composed of 10 to up to several thousand

More information

Monitoring intracellular activity of Arylsulfatase B on its natural substrates in a functional bioassay using LIF-CZE

Monitoring intracellular activity of Arylsulfatase B on its natural substrates in a functional bioassay using LIF-CZE Monitoring intracellular activity of Arylsulfatase B on its natural substrates in a functional bioassay using LIF-CZE Erno Pungor Jr; Charles M. Hague; Ginger Chen; Jeffrey F. Lemontt; William S. Prince

More information

Mucus Glycoprotein Secretion by Tracheal Explants: Effects of Pollutants

Mucus Glycoprotein Secretion by Tracheal Explants: Effects of Pollutants Environmental Health Perspectives Vol. 35, pp. 131-138, 198 Mucus Glycoprotein Secretion by Tracheal Explants: Effects of Pollutants by Jerold A. Last* and Tokio Kaizu* Tracheal slices incubated with radioactive

More information

among the most important organic compounds in the living organisms;

among the most important organic compounds in the living organisms; CARBOHYDRATES Elena Rivneac PhD, Associate Professor Department of Biochemistry and Clinical Biochemistry State University of Medicine and Pharmacy "Nicolae Testemitanu" CARBOHYDRATESare among the most

More information

Biochemistry: A Short Course

Biochemistry: A Short Course Tymoczko Berg Stryer Biochemistry: A Short Course Second Edition CHAPTER 10 Carbohydrates 2013 W. H. Freeman and Company Chapter 10 Outline Monosaccharides are aldehydes or ketones that contain two or

More information

Assay Kit for Measurement of Proteoglycan. (Sulfated Glycosaminoglycan Quantification Kit)

Assay Kit for Measurement of Proteoglycan. (Sulfated Glycosaminoglycan Quantification Kit) Assay Kit for Measurement of Proteoglycan. (Sulfated Glycosaminoglycan Quantification Kit) Cat. No. 280560-N INTRODUCTION Glycosaminoglycans (GAGs) are a major component of the extracellular matrix (ECM)

More information

BIOCHEMISTRY & MEDICINE:

BIOCHEMISTRY & MEDICINE: BIOCHEMISTRY & MEDICINE: INTRODUCTION Biochemistry can be defined as the science of the chemical basis of life (Gk bios "life"). The cell is the structural unit of living systems. Thus, biochemistry can

More information

Biology 12 - Biochemistry Practice Exam

Biology 12 - Biochemistry Practice Exam Biology 12 - Biochemistry Practice Exam Name: Water: 1. The bond between water molecules is a (n) a. ionic bond b. covalent bond c. polar covalent bond d. hydrogen bond 2. The water properties: good solvent,

More information

Prerequisites Protein purification techniques and protein analytical methods. Basic enzyme kinetics.

Prerequisites Protein purification techniques and protein analytical methods. Basic enzyme kinetics. Case 19 Purification of Rat Kidney Sphingosine Kinase Focus concept The purification and kinetic analysis of an enzyme that produces a product important in cell survival is the focus of this study. Prerequisites

More information

CHAPTER 7 Carbohydrates and Glycobiology. Key topics about carbohydrates

CHAPTER 7 Carbohydrates and Glycobiology. Key topics about carbohydrates CHAPTER 7 Carbohydrates and Glycobiology Key topics about carbohydrates Structures and names of monosaccharides Open-chain and ring forms of monosaccharides Structures and properties of disaccharides Biological

More information

Exam 3 Fall 2015 Dr. Stone 8:00. V max = k cat x E t. ΔG = -RT lnk eq K m + [S]

Exam 3 Fall 2015 Dr. Stone 8:00. V max = k cat x E t. ΔG = -RT lnk eq K m + [S] Exam 3 Fall 2015 Dr. Stone 8:00 Name There are 106 possible points (6 bonus points) on this exam. There are 8 pages. v o = V max x [S] k cat = kt e - ΔG /RT V max = k cat x E t ΔG = -RT lnk eq K m + [S]

More information

Chapter PURIFICATION OF ALKALINE PROTEASES

Chapter PURIFICATION OF ALKALINE PROTEASES Chapter PURIFICATION OF ALKALINE PROTEASES E /xtracellular alkaline proteases produced by Bacillus sp. K 25 and bacillus pumilus K 242, were purified and the homogeneity was examined by electrophoresis.

More information

Dr. Basima Sadiq Ahmed PhD. Clinical biochemist

Dr. Basima Sadiq Ahmed PhD. Clinical biochemist Dr. Basima Sadiq Ahmed PhD. Clinical biochemist MEDICAL AND BIOLOGICAL IMPORTANCE 1. major source of energy for man. e.g, glucose is used in the human body for energy production. 2. serve as reserve food

More information

CARBOHYDRATE CHEMISTRY

CARBOHYDRATE CHEMISTRY Medical Biochemistry and Molecular Biology CARBOHYDRATE CHEMISTRY Polysaccharides 2 By Ayman Elsamanoudy Objectives (ILOs) I. to study the definition, classification of polysaccharides II. to know the

More information

189,311, , ,561, ,639, ,679, Ch13; , Carbohydrates

189,311, , ,561, ,639, ,679, Ch13; , Carbohydrates Lecture 31 (12/8/17) Reading: Ch7; 258-267 Ch10; 371-373 Problems: Ch7 (text); 26,27,28 Ch7 (study-guide: applying); 2,5 Ch7 (study-guide: facts); 6 NEXT (LAST!) Reading: Chs4,6,8,10,14,16,17,18; 128-129,

More information

HPLC '88. Poster Presentation. Isolation of Thymosin B4 from Thymosin Fraction 5 by Reverse Phase HPLC

HPLC '88. Poster Presentation. Isolation of Thymosin B4 from Thymosin Fraction 5 by Reverse Phase HPLC Essentials in HPLC '88 Poster Presentation Isolation of Thymosin B4 from Thymosin Fraction 5 by Reverse Phase HPLC M. Badamchian, M.P. Strickler, M.J. Stone, A.L. Goldstein for Waters.bioresearchThe absolute,

More information

Case 19 Purification of Rat Kidney Sphingosine Kinase

Case 19 Purification of Rat Kidney Sphingosine Kinase Case 19 Purification of Rat Kidney Sphingosine Kinase Focus concept The purification and kinetic analysis of an enzyme that produces a product important in cell survival is the focus of this study. Prerequisites

More information

I. Polymers & Macromolecules Figure 1: Polymers. Polymer: Macromolecule: Figure 2: Polymerization via Dehydration Synthesis

I. Polymers & Macromolecules Figure 1: Polymers. Polymer: Macromolecule: Figure 2: Polymerization via Dehydration Synthesis I. Polymers & Macromolecules Figure 1: Polymers Polymer: Macromolecule: Figure 2: Polymerization via Dehydration Synthesis 1 Dehydration Synthesis: Figure 3: Depolymerization via Hydrolysis Hydrolysis:

More information

PDF hosted at the Radboud Repository of the Radboud University Nijmegen

PDF hosted at the Radboud Repository of the Radboud University Nijmegen PDF hosted at the Radboud Repository of the Radboud University Nijmegen The following full text is a publisher's version. For additional information about this publication click this link. http://hdl.handle.net/2066/142604

More information

TECHNICAL BULLETIN. R 2 GlcNAcβ1 4GlcNAcβ1 Asn

TECHNICAL BULLETIN. R 2 GlcNAcβ1 4GlcNAcβ1 Asn GlycoProfile II Enzymatic In-Solution N-Deglycosylation Kit Product Code PP0201 Storage Temperature 2 8 C TECHNICAL BULLETIN Product Description Glycosylation is one of the most common posttranslational

More information

Understanding Alzheimer s Disease. María O. Longas. Purdue University Calumet August 10, 2015

Understanding Alzheimer s Disease. María O. Longas. Purdue University Calumet August 10, 2015 Understanding Alzheimer s Disease María O. Longas Purdue University Calumet August 10, 2015 Alzheimer s disease (AD) is a degenerative disorder of the central nervous system (CNS) that is characterized

More information

CARBOHYDRATES (SUGARS)

CARBOHYDRATES (SUGARS) ARBYDRATES (SUGARS) ARBYDRATES: 1. Most Abundant Molecules on Earth: (100 MILLIN METRI TNS f 2 And 2 0 onverted To ellulose and ther Plant Products/Year) 2. FUNTINS: Diet, Energy, Structural, Signalling

More information

BIOLOGICAL MOLECULES REVIEW-UNIT 1 1. The factor being tested in an experiment is the A. data. B. variable. C. conclusion. D. observation. 2.

BIOLOGICAL MOLECULES REVIEW-UNIT 1 1. The factor being tested in an experiment is the A. data. B. variable. C. conclusion. D. observation. 2. BIOLOGICAL MOLECULES REVIEW-UNIT 1 1. The factor being tested in an experiment is the A. data. B. variable. C. conclusion. D. observation. 2. A possible explanation for an event that occurs in nature is

More information

Chapter 1. Chemistry of Life - Advanced TABLE 1.2: title

Chapter 1. Chemistry of Life - Advanced TABLE 1.2: title Condensation and Hydrolysis Condensation reactions are the chemical processes by which large organic compounds are synthesized from their monomeric units. Hydrolysis reactions are the reverse process.

More information

Connective Tissue (CT)

Connective Tissue (CT) Connective Tissue (CT) YONG-MEI CHEN ( 陈咏梅 ) Dept. of Anatomy, Histology & Embryology Peking Union Medical College Tel:69156461 E-mail address: pumc_he@126.com Content Introduction of CT 1. Origin 2. Compositions

More information

Cell Walls, the Extracellular Matrix, and Cell Interactions (part 1)

Cell Walls, the Extracellular Matrix, and Cell Interactions (part 1) 14 Cell Walls, the Extracellular Matrix, and Cell Interactions (part 1) Introduction Many cells are embedded in an extracellular matrix which is consist of insoluble secreted macromolecules. Cells of bacteria,

More information

Transfer of mannose from mannosyl retinyl phosphate to protein (vitamin A/dolichyl mannosyl phosphate/pronase/a-mannosidase)

Transfer of mannose from mannosyl retinyl phosphate to protein (vitamin A/dolichyl mannosyl phosphate/pronase/a-mannosidase) Proc. Natl. Acad. Sci. USA Vol. 74, No. 9, pp. 3762-3766, September 1977 Biochemistry Transfer of mannose from mannosyl retinyl phosphate to protein (vitamin A/dolichyl mannosyl phosphate/pronase/a-mannosidase)

More information

Unit 3: Chemistry of Life Mr. Nagel Meade High School

Unit 3: Chemistry of Life Mr. Nagel Meade High School Unit 3: Chemistry of Life Mr. Nagel Meade High School IB Syllabus Statements 3.2.1 Distinguish between organic and inorganic compounds. 3.2.2 Identify amino acids, glucose, ribose and fatty acids from

More information

Effect of epithelial debridement on human cornea proteoglycans

Effect of epithelial debridement on human cornea proteoglycans Brazilian Human corneal Journal explant of Medical proteoglycans and Biological Research (2001) 34: 325-331 ISSN 0100-879X Short Communication 325 Effect of epithelial debridement on human cornea proteoglycans

More information

Dr. Entedhar Carbohydrates Carbohydrates are carbon compounds that have aldehyde (C-H=0) or ketone (C=O) moiety and comprises polyhyroxyl alcohol

Dr. Entedhar Carbohydrates Carbohydrates are carbon compounds that have aldehyde (C-H=0) or ketone (C=O) moiety and comprises polyhyroxyl alcohol Dr. Entedhar Carbohydrates Carbohydrates are carbon compounds that have aldehyde (C-H=0) or ketone (C=O) moiety and comprises polyhyroxyl alcohol (polyhydroxyaldehyde or polyhyroxyketone); their polymers,which

More information

OCR (A) Biology A-level

OCR (A) Biology A-level OCR (A) Biology A-level Topic 2.2: Biological molecules Notes Water Water is a very important molecule which is a major component of cells, for instance: Water is a polar molecule due to uneven distribution

More information

Review of Biochemistry

Review of Biochemistry Review of Biochemistry Chemical bond Functional Groups Amino Acid Protein Structure and Function Proteins are polymers of amino acids. Each amino acids in a protein contains a amino group, - NH 2,

More information

Substrate Specificity and Salt Inhibition of Five Proteinases Isolated from the Pyloric Caeca and Stomach of Sardine

Substrate Specificity and Salt Inhibition of Five Proteinases Isolated from the Pyloric Caeca and Stomach of Sardine Agric. Biol. Chem., 46 (6), 1565~1569, 1982 1565 Substrate Specificity and Salt Inhibition of Five Proteinases Isolated from the Pyloric Caeca and Stomach of Sardine Minoru Noda, Thanh Vo Van, Isao Kusakabe

More information

Carbohydrates - General Description

Carbohydrates - General Description arbohydrates - General Description A. Polyhydroxy Aldehydes or Ketones ARBN AIN B. Serve a variety of functions ARBN AIN ARBN AIN 1. Energy storage (Glucose, Glycogen, Starch) 2. Structural Support (ellulose,

More information

The Carbon Atom (cont.)

The Carbon Atom (cont.) Organic Molecules Organic Chemistry The chemistry of the living world. Organic Molecule a molecule containing carbon and hydrogen Carbon has 4 electrons in its outer shell and can share electrons with

More information

Organic Chemistry 3540

Organic Chemistry 3540 rganic Chemistry 3540 December 8, 2004 (8 Pages, 13 Parts) ame 1. (8%) Many organic compounds found in living systems are complex molecules which can be characterized, in part, by simply listing the chemical

More information

The addition of sugar moiety determines the blood group

The addition of sugar moiety determines the blood group The addition of sugar moiety determines the blood group Sugars attached to glycoproteins and glycolipids on the surfaces of red blood cells determine the blood group termed A, B, and O. The A and B antigens

More information

Key Words: Brassica oleraceae, glucosinolate, liquid chromatography mass spectrometry, FNH-I-003

Key Words: Brassica oleraceae, glucosinolate, liquid chromatography mass spectrometry, FNH-I-003 IDENTIFICATION OF MAJOR GLUCOSINOLATES IN BROCCOLI (Brassica oleracea var. italica) BY LIQUID CHROMATOGRAPHY MASS SPECTROMETRY (LC-MS) AND DETERMINATION OF ANTICANCER PROPERTIES OF BROCCOLI EXTRACTS Carlos

More information

Biomolecules. Unit 3

Biomolecules. Unit 3 Biomolecules Unit 3 Atoms Elements Compounds Periodic Table What are biomolecules? Monomers vs Polymers Carbohydrates Lipids Proteins Nucleic Acids Minerals Vitamins Enzymes Triglycerides Chemical Reactions

More information

ON THE NATURE OF THE TRANSALDOLASE-DIHYDROXYACETONE

ON THE NATURE OF THE TRANSALDOLASE-DIHYDROXYACETONE VOL. 47, 1961 BIOCHEMISTRY: HORECKER ET AL. 1949 3 Bonsignore, A., S. Pontremoli, E. Grazi, and M. Mangiarotti, Biochem. Biophys. Research Communs., 1, 79 (1959). 4 Venkataraman, R., and E. Racker, J.

More information

Water: 1. The bond between water molecules is a(n) a. ionic bond b. covalent bond c. polar covalent bond d. hydrogen bond

Water: 1. The bond between water molecules is a(n) a. ionic bond b. covalent bond c. polar covalent bond d. hydrogen bond Biology 12 - Biochemistry Practice Exam KEY Water: 1. The bond between water molecules is a(n) a. ionic bond b. covalent bond c. polar covalent bond d. hydrogen bond 2. The water properties: good solvent,

More information

The Role of a Dolichol-Oligosaccharide as an Intermediate in Glycoprotein Biosynthesis

The Role of a Dolichol-Oligosaccharide as an Intermediate in Glycoprotein Biosynthesis University of South Carolina Scholar Commons Faculty Publications Chemistry and Biochemistry, Department of 6-1974 The Role of a Dolichol-Oligosaccharide as an Intermediate in Glycoprotein Biosynthesis

More information

Carbohydrates. What are they? What do cells do with carbs? Where do carbs come from? O) n. Formula = (CH 2

Carbohydrates. What are they? What do cells do with carbs? Where do carbs come from? O) n. Formula = (CH 2 Carbohydrates What are they? Formula = (C 2 O) n where n > 3 Also called sugar Major biomolecule in body What do cells do with carbs? Oxidize them for energy Store them to oxidize later for energy Use

More information

Chapter 3 Guided Reading Notes Carbon and the Molecular Diversity of Life

Chapter 3 Guided Reading Notes Carbon and the Molecular Diversity of Life AP Biology Name: Block Chapter 3 Guided Reading Notes Carbon and the Molecular Diversity of Life Most of this chapter is new material. We will discuss it all in detail. Section 1 1. Make an electron distribution

More information

Name a property of. water why is it necessary for life?

Name a property of. water why is it necessary for life? 02.09.18 Name a property of + water why is it necessary for life? n Cohesion n Adhesion n Transparency n Density n Solvent n Heat capacity + Macromolecules (2.3 & some of 2.4) + Organic Molecules All molecules

More information

Consequently, lipoprotein fractions have been analyzed

Consequently, lipoprotein fractions have been analyzed THE PHOSPHOLIPID COMPOSITION OF HUMAN SERUM LIPOPROTEIN FRACTIONS SEPARATED BY ULTRACENTRIFUGATION * BY GERALD B. PHILLIPS (From the Departments of Biochemistry and Medicine, College of Physicians and

More information

Chapter 3. Table of Contents. Section 1 Carbon Compounds. Section 2 Molecules of Life. Biochemistry

Chapter 3. Table of Contents. Section 1 Carbon Compounds. Section 2 Molecules of Life. Biochemistry Biochemistry Table of Contents Section 1 Carbon Compounds Section 2 Molecules of Life Section 1 Carbon Compounds Objectives Distinguish between organic and inorganic compounds. Explain the importance of

More information

Chapter 11. Learning objectives: Structure and function of monosaccharides, polysaccharide, glycoproteins lectins.

Chapter 11. Learning objectives: Structure and function of monosaccharides, polysaccharide, glycoproteins lectins. Chapter 11 Learning objectives: Structure and function of monosaccharides, polysaccharide, glycoproteins lectins. Carbohydrates Fuels Structural components Coating of cells Part of extracellular matrix

More information

BIL 256 Cell and Molecular Biology Lab Spring, Tissue-Specific Isoenzymes

BIL 256 Cell and Molecular Biology Lab Spring, Tissue-Specific Isoenzymes BIL 256 Cell and Molecular Biology Lab Spring, 2007 Background Information Tissue-Specific Isoenzymes A. BIOCHEMISTRY The basic pattern of glucose oxidation is outlined in Figure 3-1. Glucose is split

More information

Role of the Carbohydrate Moiety in Phospholipase B from Torulaspora delbrueckii

Role of the Carbohydrate Moiety in Phospholipase B from Torulaspora delbrueckii Agric. Bioi Chern., 54 (3), 599-603, 1990 599 Role of the Carbohydrate Moiety in Phospholipase B from Torulaspora delbrueckii Masafumi Maruyama, Hideki Kadowaki, Yasuo Watanabe and Youichi Tamai Department

More information

Questions- Carbohydrates. A. The following structure is D-sorbose. (Questions 1 7) CH 2 OH C = O H C OH HO C H H C OH

Questions- Carbohydrates. A. The following structure is D-sorbose. (Questions 1 7) CH 2 OH C = O H C OH HO C H H C OH Questions- Carbohydrates A. The following structure is D-sorbose. (Questions 1 7) CH 2 C = O H C HO C H H C CH 2 1. 2. 3. 4. 5. Which characteristic is different when comparing the open-chain forms of

More information

Chapter Three (Biochemistry)

Chapter Three (Biochemistry) Chapter Three (Biochemistry) 1 SECTION ONE: CARBON COMPOUNDS CARBON BONDING All compounds can be classified in two broad categories: organic compounds and inorganic compounds. Organic compounds are made

More information

Ch. 5 The S & F of Macromolecules. They may be extremely small but they are still macro.

Ch. 5 The S & F of Macromolecules. They may be extremely small but they are still macro. Ch. 5 The S & F of Macromolecules They may be extremely small but they are still macro. Background Information Cells join small molecules together to form larger molecules. Macromolecules may be composed

More information

SPECIFICITY, DEGREE OF SULFATION, AND DETERGENT EFFECTS WITH 4-SULFATING AND 6-SULFATING MICROSOMAL SYSTEMS*

SPECIFICITY, DEGREE OF SULFATION, AND DETERGENT EFFECTS WITH 4-SULFATING AND 6-SULFATING MICROSOMAL SYSTEMS* Vol. 263, No. 10. Issue of April 5, pp. 4673%4678,1988 Printed in U.S. A. Sulfation of Chondroitin SPECIFICITY, DEGREE OF SULFATION, AND DETERGENT EFFECTS WITH 4-SULFATING AND 6-SULFATING MICROSOMAL SYSTEMS*

More information

into calf and beef corneal glycosaminoglycans Claes H. Dohlman, Bernard Wortman,* and Siw Hultman

into calf and beef corneal glycosaminoglycans Claes H. Dohlman, Bernard Wortman,* and Siw Hultman Incorporation of sulfate- 35 S, N-acetylglucosamine-l- 14 C, glucose-l- 14 C, and galactose-l- 14 C into calf and beef corneal glycosaminoglycans Claes H. Dohlman, Bernard Wortman,* and Siw Hultman Beef

More information

Oligosaccharide Profiling of O-linked Oligosaccharides Labeled with 2 Aminobenzoic Acid (2-AA)

Oligosaccharide Profiling of O-linked Oligosaccharides Labeled with 2 Aminobenzoic Acid (2-AA) Oligosaccharide Profiling of O-linked Oligosaccharides Labeled with 2 Aminobenzoic Acid (2-AA) Elisabeth A. Kast and Elizabeth A. Higgins GlycoSolutions Corporation, Worcester, MA Data originally presented

More information

Student Number: To form the polar phase when adsorption chromatography was used.

Student Number: To form the polar phase when adsorption chromatography was used. Name: Student Number: April 14, 2001, 1:30 AM - 4:30 PM Page 1 (of 4) Biochemistry II Lab Section Final Examination Examiner: Dr. A. Scoot 1. Answer ALL questions in the space provided.. 2. The last page

More information

Carbohydrates. Prof. Ramune Morkuniene

Carbohydrates. Prof. Ramune Morkuniene Carbohydrates Prof. Ramune Morkuniene Topics Monosaccharides and their derivatives Disaccharides. Lactose intolerance Carbohydrate sweeteners. Artificial sweeteners Blood type and monosaccharides Important

More information

Isolation and Characterization of Proteoglycans Secreted by Normal and Malignant Human Mammary Epithelial Cells*

Isolation and Characterization of Proteoglycans Secreted by Normal and Malignant Human Mammary Epithelial Cells* THE JOURNAL OF BIOLOGICAL CHEMISTRY 0 1986 by The American Society of Biological Chemists, Inc. Vol. 261, No. 11, Issue of April 15, pp. 49264934,1986 Printed in U.S.A. Isolation and Characterization of

More information

Lecture Series 2 Macromolecules: Their Structure and Function

Lecture Series 2 Macromolecules: Their Structure and Function Lecture Series 2 Macromolecules: Their Structure and Function Reading Assignments Read Chapter 4 (Protein structure & Function) Biological Substances found in Living Tissues The big four in terms of macromolecules

More information

NOTE: For studying for the final, you only have to worry about those with an asterix (*)

NOTE: For studying for the final, you only have to worry about those with an asterix (*) NOTE: For studying for the final, you only have to worry about those with an asterix (*) (*)1. An organic compound is one that: a. contains carbon b. is slightly acidic c. forms long chains d. is soluble

More information

HEPARIN SODIUM. Heparinum natricum

HEPARIN SODIUM. Heparinum natricum Pharmeuropa 25.1 1 Reference: PA/PH/Exp. 6/T (12) 37 ANP NOTE ON THE MONOGRAPH Definition. It is proposed to restrict the scope to heparin material of porcine origin since some of the latest requirements

More information

Urinary excretion of glycosaminoglycans in normal and stone

Urinary excretion of glycosaminoglycans in normal and stone Kidney International, Vol. 36 (1989), pp. 1022 1028 Urinary excretion of glycosaminoglycans in normal and stone forming subjects YAi& M. MICHELACCI, REGtANE Q. GLASHAN, and NESTOR SCHOR Departamento de

More information

TENOFOVIR TABLETS: Final text for addition to The International Pharmacopoeia (June 2010)

TENOFOVIR TABLETS: Final text for addition to The International Pharmacopoeia (June 2010) June 2010 TENOFOVIR TABLETS: Final text for addition to The International Pharmacopoeia (June 2010) This monograph was adopted at the Forty-fourth WHO Expert Committee on Specifications for Pharmaceutical

More information

Organic Compounds. Biology-CP Mrs. Bradbury

Organic Compounds. Biology-CP Mrs. Bradbury Organic Compounds Biology-CP Mrs. Bradbury Carbon Chemistry The compounds that form the cells and tissues of the body are produced from similar compounds in the foods you eat. Common to most foods and

More information

Carbohydrates. Learning Objective

Carbohydrates. Learning Objective , one of the four major classes of biomolecules, are aldehyde or ketone compounds with multiple hydroxyl groups. They function as energy stores, metabolic intermediates and important fuels for the body.

More information

Sheet #8 Dr. Nafeth Abu-Tarboush

Sheet #8 Dr. Nafeth Abu-Tarboush 1 arbohydrates There are two topic goals in our study of carbohydrates: Monosaccharides: to recognize their structure, properties, & their stereochemistry. The nature of di-, oligo- & polysaccharides.

More information

Serrata) Alkaline Phosphatase

Serrata) Alkaline Phosphatase Vol. 41, No. 5, April 1997 BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL Pages 951-959 An Essential Tryptophan Residue of Green Crab (Syclla Serrata) Alkaline Phosphatase Wen-Zhu Zheng 1, Qing-Xi Chen

More information

BIOLOGICAL MOLECULES. Although many inorganic compounds are essential to life, the vast majority of substances in living things are organic compounds.

BIOLOGICAL MOLECULES. Although many inorganic compounds are essential to life, the vast majority of substances in living things are organic compounds. BIOLOGY 12 BIOLOGICAL MOLECULES NAME: Although many inorganic compounds are essential to life, the vast majority of substances in living things are organic compounds. ORGANIC MOLECULES: Organic molecules

More information

Antoine Bouchoux, Pierre-Emerson Cayemitte, Julien Jardin, Geneviève Gésan-Guiziou, and Bernard Cabane

Antoine Bouchoux, Pierre-Emerson Cayemitte, Julien Jardin, Geneviève Gésan-Guiziou, and Bernard Cabane Biophysical Journal, Volume 96 Supplementary Material Casein Micelle Dispersions under Osmotic Stress Antoine Bouchoux, Pierre-Emerson Cayemitte, Julien Jardin, Geneviève Gésan-Guiziou, and Bernard Cabane

More information

Biology 12. Biochemistry. Water - a polar molecule Water (H 2 O) is held together by covalent bonds.

Biology 12. Biochemistry. Water - a polar molecule Water (H 2 O) is held together by covalent bonds. Biology 12 Biochemistry Water - a polar molecule Water (H 2 O) is held together by covalent bonds. Electrons in these bonds spend more time circulating around the larger Oxygen atom than the smaller Hydrogen

More information

Europium Labeling Kit

Europium Labeling Kit Europium Labeling Kit Catalog Number KA2096 100ug *1 Version: 03 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Intended Use... 3 Background... 3 Principle of the Assay...

More information

CARBOHYDRATES (H 2. Empirical formula: C x. O) y

CARBOHYDRATES (H 2. Empirical formula: C x. O) y CARBYDRATES 1 CARBYDRATES Empirical formula: C x ( 2 ) y 2 CARBYDRATES- WERE? In solid parts of: plants, up to 80% animals, do not exceed 2% In plants: main storage material (starch) building material

More information