Structural Studies of Alcohol Dehydrogenase from Human Liver
|
|
- Christian Hudson
- 5 years ago
- Views:
Transcription
1 Enr. J. Biochem. 25 (1972) Structural Studies of Alcohol Dehydrogenase from Human Liver Hans JORNVALL and Regina PIETRUSZKO Medicinska Nobelinstitutet, Biokemiska Avdelningen, Karolinska Institutet, Stockholm (Received October ll/november 22, 1971) Tryptjc peptide maps of human liver alcohol dehydrogenase show this protein to be homologous to the corresponding protein of the horse. A subunit molecular weight very close to is established for the human enzyme. Sequence analysis of about one quarter of the tryptic peptides of human alcohol dehydrogenase show identical residues to the horse enzyme at about goo/,, of the positions, which is considered fairly representative of the general resemblance between the two proteins. All amino acid exchanges found are compatible with one-base mutations in the genetic code. Two different types of subunits of human liver alcohol dehydrogenase are identified. They are essentially similar but differ at some positions, one of which is No. 43 (valine in one subunit and alanine in the other). Still other subunit types may exist. The known occurrence of isoenzymes of human liver alcohol dehydrogenase may therefore be explained at least in part by subunits of different primary structures. The amino acid differences between the subunits of the human enzyme are not found at the same positions as those between the two types of subunit of the horse enzyme. The structural differences between subunits from the two species seem greater than between the subunits within either species. Isoenzyme differences may, therefore, have evolved independently in the two species. The suggestion that some of the amino acid exchanges between the horse subunits may be directly involved in the substrate binding is supported. The isoenzyme and species differences at position 43 is only three residues away from the reactive active site cysteine residue. The region around this important residue is thus not kept constant in liver alcohol dehydrogenase during evolution. Alcohol dehydrogenase from human liver occurs in multiple forms. A three-group isoenzyme pattern similar to the one found in the horse liver enzyme has been observed on gel-electrophoresis [i] as well as more complex patterns [2,3]. The isoenzyme distribution varies among different livers examined and a developmental change has been reported [Z]. In addition, isoenzyme forms indistinguishable from others upon electrophoresis but detectable due to different kinetic properties are known [4,3]. The subunit composition and relationship of all these isoenzymes is unknown and it is difficult to correlate the various forms reported in different studies. Human liver alcohol dehydrogenase preparations have been purified [5-7,3]. The molecular weight is reported to be [5] and the active enzyme to be a dimer [8]. No structural studies, except for a total amino acid composition [7], have, however, been performed on human liver alcohol dehydrogenase. It is therefore not known whether isoenzymes occur due to the presence of subunits with different Unusual Abbreviation. CM- = carboxymethyl-. Enzymes. Alcohol dehydrogenase (EC ); glyceraldehyde-3-phosphate dehydrogenase (EC ) ; trypsin (EC ). primary structures, as in the horse enzyme [9], or whether other factors alone modify primarily homogeneous subunits to produce varying isoenzymes. Neither is the relationship between the human and horse enzymes known. Available molecular weight determinations [5] suggest the human enzyme to be somewhat larger than the equine form but their subunits, after monomerisation, can nevertheless be polymerised to produce hybrids [8]. In the present work the structure of human liver alcohol dehydrogenase was studied with the aim of comparing its primary structure with that of the horse enzyme. At the same time the human dehydrogenase preparation was examined for evidence of structurally different subunits that could explain the occurrence of isoenzymes. The extent of structural similarity between the human and equine enzymes has been established. Subunits with different primary structures were found in the human enzyme and their relationship towards the different subunits of the horse enzyme ascertained. In addition, the structural differences found between the human and equine enzymes help to explain the function of certain regions of the protein molecule of liver alcohol dehydrogenase.
2 284 Structural Studies of Human Liver Alcohol Dehydrogenase Eur. J. Biochem. MATERIALS AND METHODS Preparation of [14C]Carboxymethylated Enzyme Proteins Human liver alcohol dehydrogenase was prepared as described by Pietruszko and Theorell [3]. Isoenzyme fractions 1 and 2, which were present in all human livers examined [3], were pooled after the CM-cellulose chromatography and passed through a column of Sephadex G-100. This preparation contained isoenzymes 1 and 2 in about equal amounts as judged by starch-gel electrophoresis [3]. The material was freeze-dried, dissolved in 6 M guanidine-hc1 containing 2 mm EDTA and 0.1 M Tris ph 8.10 (10 mg protein/ml solution), reduced with dithioerythritol (0.5 pmol/mg protein, corresponding to about 45O/, molar excess over protein SH-groups) and carboxymethylated with iodo- [2-14C]acetate (1.58 pmol/mg protein, equivalent to about iso/, molar excess over total SH-groups) at 20 "C for 3 h. After repeated dialysis against 1 mm HC1 the carboxymethylated protein solution (3 mg/ml) was used directly for subsequent experiments. Horse liver alcohol dehydrogenase (EE isoenzyme) was kindly supplied by Dr Akeson in our laboratory. The freeze-dried protein was carboxymethylated as described above. Preparation of Peptide Maps Trypsin was obtained from the Worthington Biochemical Corporation and added to the carboxymethylated protein solution in 1 mm HCl, after which ammonium bicarbonate (final concentration lo/o, w/v) was added in solid form. The ratio of trypsin to protein was 1 : I00 by weight and digestion was performed at 37 "C for 4 h. The material was then freeze-dried. Peptide mapping was performed on Whatman No. 3 MM paper by high-voltage electrophoresis in cooled tanks [lo] and chromatography in n-butano1 -acetic acid- water-pyridine (15: 3 : 12 : 10, v/v/v/v) as previously used with alcohol dehydrogenase [9]. Dimensions were changed by stitching appropriate areas onto new papers [ll] and after each step the resolution was controlled by autoradiography. The first dimension was electrophoresis at ph 6.5; the second dimension was chromatography for basic peptides, electrophoresis at ph 3.5 for acidic peptides and electrophoresis at ph 1.9 followed by chromatography as a third dimension for neutral peptides [9,12]. Papers were finally stained with ninhydrin [13] or specific reagents for arginine, tyrosine and tryptophan [14]. Determination of Amino Acid Sequences Peptides were purified by paper electrophoresis and chromatography in the systems mentioned above. The total composition of pure peptides was obtained with a Beckman-Spinco model 120-B amino acid analyser after hydrolysis at 110 "C with 6 N HC1 containing 1 o/o phenol for 24 h. End groups were determined with the dansyl technique [15] and sequence analysis was performed with the dansyl-edman method [16,17]. Dansyl amino acids were identified by thin-layer chromatography on polyamide sheets [18] in four systems as previously described [19]. RESULTS Comparison between the Tryptic Digests of the [14C]Carboxymethylated Alcohol Dehydrogenases from Human and Horse Liver The [14C]carboxymethylated human liver alcohol dehydrogenase preparation (3 mg) as well as the corresponding derivative of horse liver alcohol dehydrogenase (EE-isoenzyme) were digested with trypsin under identical conditions. The peptide digests obtained were then mapped by electrophoresis and chromatography as described in the previous section. In this way most peptides were clearly resolved. The neutral peptides, stained with ninhydrin, are shown in Fig. 1 and the corresponding autoradiograph in Fig. 2. The peptide maps obtained from the human and the horse enzymes are very similar. In most cases a peptide spot in one enzyme can be matched with a corresponding spot in the other. The approximate number of spots and therefore tryptic peptides is the same in both enzymes. Peptides containing particular residues, like CM-cysteine, revealed by autoradiography (cf. Fig. 2), or arginine and tyrosine, revealed by specific staining, are also very similar. In addition, the N- and C-terminal peptides of the horse enzyme can be matched with identically placed peptide spots in the digest of human liver alcohol dehydrogenase. Each digest has two peptides containing tryptophan. One is basic, common to both, the other is neutral in the digest of the human enzyme but acidic in that of the horse. It is, however, interesting to notice that the neutral human peptide containing tryptophan is identical in mobility to the corresponding peptide [9] found in the other type, SS, of horse isoenzyme. All these facts establish that the structures of the enzyme from the two different species are closely related. Therefore, the subunit size of human liver alcohol dehydrogenase is similar to the one of the equine enzyme, and all human subunits are, between themselves, similar in structure. A more detailed inspection of the peptide maps reveal that a few of the spots from the digest of human liver alcohol dehydrogenase are stained considerably weaker than the surrounding peptide spots. They are also proportionately weaker than the
3 Vo1.25, No.2, 1972 H. JORNVALL and It. PIETRUSZKO 285 Fig. 1. A two-dimensional resolution of the neutral peptides from the digests o/ [14C]carboxymethylated horse (right) and submitted to electrophoresis at ph 1.9. This paper was then stitched for the final dimension, chromatography in human (left) alcohol dehydrogenase. After electrophoresis butanol-acetic acid-water-pyridine (15: 3: 12: 10, v/v/ at ph 6.5 of the original digests the paper areas containing v/v) onto a new sheet in such a way that the two fingerthe neutral peptides were stitched onto a new sheet and prints would form mirror images of each other. Peptides were revealed by staining with ninhydrin Fig.2. An autoradiograph of the peptide maps shown in Fig.1. The arrows indicate the peptide containing the carboxymethylated active-site cysteine residue of the horse enzyme and the two analogous peptides (A and B) of the human enzyme corresponding spots in the digest of the equine enzyme. In one case this difference is also clearly noticable in the strength of the spots on the autoradiographs (cf. Fig.2). This applies to the peptide spot containing cysteine No. 46 of the horse enzyme [19], which is indicated by an arrow in Fig.2. That spot is divided into two spots, located closely together (A and B in Fig. 2) in the map of the human enzyme. Moreover, each of these two spots have approximately half the density of the surrounding spots.
4 286 Structural Studies of Human Liver Alcohol Dehydrogenase Enr. J. Biochem. Such a picture is exactly what one expects to find when a protein preparation contains two types of subunits which are identical except for differences at just a few positions. In this case the general spot density corresponds to peptides which are common to all subunits whereas split and correspondingly weaker spots are dirived from the few peptides that differ among the subunits. It may also be recalled that this situation was indeed found when digests of the hybrid isoenzymes EX of horse liver alcohol dehydrogenase were studied [B]. Peptide spots peculiar to the E- or S-subunits are then recovered in half the yield of the common spots (cf. Fig.1 in [B]). The differences in the case of the horse subunits do not, however, affect the same tryptic peptides as in the case of the human enzyme. These results suggest that human liver alcohol dehydrogenase may contain more than one type of subunit, which might explain the occurrence of isoenzymes ; that the different subunits are essentially similar except at a few positions, one of which is close to cysteine No. 46; and that the differences between the human subunits are mainly other than those that occur between the E- and S-subunits of the horse enzyme. Amino Acid Sequence Analysis of Peptides from Human Liver Alcohol Dehydrogenase In order to verify the conclusions drawn above some of the peptides from human liver alcohol dehydrogenase were prepared pure. 15mg of the tryptic digest of the [14C]carboxymethylated protein was then submitted to paper electrophoresis on Whatman No. 3 MM paper at ph 6.5. Autoradiographs and appropriate guide-strips were used to follow the purification through the subsequent steps of electrophoresis at ph 3.5 or 1.9 and chromatography in n-butanol-acetic acid-water-pyridine (15 : 3 : 12 : 10, v/v/v/v). The purified tryptic peptides were selected to represent those of special interest. They were the two neutral peptides (called N and C) which occupy the same positions in the peptide map of the human enzyme as the N- and C-terminal tryptic peptides in the map of the horse enzyme, the two neutral peptides A and B in Fig.2 corresponding to the peptide containing the active site cysteine residue [20,21] at position No. 46 [19] in the horse enzyme, three neutral peptides (TNl, TN2 and TN3) containing CM-cysteine, two basic peptides (TB1 and TB2) and the most acidic major tryptic peptide (TA1). These peptides from the human enzyme represent some with exactly the same position in the fingerprints as the corresponding peptides of the horse enzyme as well as others whose positions do not match. The purified peptides comprise nearly onefourth of the total number of major tryptic peptides and about one-sixth of the subunit length. These peptides should therefore give a reasonable indication of the structure of the human enzyme. The number of purification steps, the recovery, the electrophoretic mobility at ph 6.5, the total composition and the N-terminus of each peptide is shown in Table 1. Peptide N. No free N-terminal amino acid of peptide N could be detected by the dansyl method and the charge at ph 6.5 is neutral although the peptide contains one basic and no acidic amino acid residues (Table 1). An N-terminal blocking group is therefore probable. The peptide could not be degraded by the Edman method anti sequence analysis was performed by partial acid hydrolysis in 9.3 N HC1 for 24 h at room temperature. Several fragments were produced, and separated by electrophoresis. The structures of these, as judged by end group analysis and by paper electrophoresis at ph 1.9 after total hydrolysis, were: Ser-(Thr,Ala), Thr-(Ala,Gly,Lys), Gly-Lys and Lys. In addition, the de-blocked free peptide Ser-(Thr,Ala,Gly,Lys) was obtained. The amino acid sequence X-Ser-Thr- Ala-Gly-Lys is thus deduced. The N-terminal blocking group is likely to be an acetyl group, as in the horse enzyme [19], but the material was not enough for an acetyl group determination. The results prove that peptide N is the N-terminal tryptic peptide of human liver alcohol dehydrogenase. Peptide C. This contains five residues. The complete amino acid sequence was determined by the dansyl-edman method to be Thr-Val-Leu-Thr-Phe in agreement with the total composition and charge (cf. Table 1). This tryptic peptide contains no basic residues and is therefore considered to be derived from the C-terminus of the protein chain of human liver alcohol dehydrogenase. This is strongly supported by the clear homology with the corresponding peptide of the horse enzyme (cf. below). Peptides A and B (cf. Fig.2). Both peptides contain eight residues (Table 1). Degradation by the dansyl-edman method showed the order of the six first residues to be Met-Val-Ala-Val-Gly-Ilein peptide A and Met-Val-Ala-Ala-Gly-Ile- in peptide B. This is in agreement with the total compositions (Tablel), which also show both peptides to contain CM-cysteine and arginine in addition. Arginine is C-terminal as both peptides are obtained from a tryptic digest. The primary structure of A is therefore Met-Val-Ala-Val-Gly-Ile-Cys(Cm)-Arg and of B Met-Val-Ala-Ala-Gly-Ile-Cys(Cm)-Arg. The two peptides differ in only the fourth position (valine in A, alanine in B). This has no effect on the electrophoretic mobilities but the increased hydrophobicity of valine as compared to alanine makes peptide A run slightly farther than B in the chromatographic system (cf. Fig.2). The two peptides are clearly homologous and their structures confirm the conclu-
5 Vo1.25, N0.2,1972 H. JORNVALL and R. PIETRUSZKO 287 Table 1. Data for ten tryptic peptides purified from hhumn liver alcohol dehydrogenase Hydrolyses were performed in 6 N HCI (with lo/, phenol) at 110 "C for 24 h. The values given are molar ratios (those below 0.3 have been omitted). No corrections for destruction, incomplete hydrolysis or impurities have been made Peptide N C A B TN1 TN2 TN3 TB1 TB2 TA1 Recovery (O/,) No. ofpurificationsteps Electrophoretic mobility at ph 6.5 [23] Composition : CM-Cysteine Aspartic acid Threonine Serine Glutamic acid Proline Glycine Alanine Valine Methionine Isoleucine Leucine Tyrosine Phenylalanine Lysine Arginine _ - _ 1.3 (1) 2.0 (2) _ (1) 2.2 (2) 1.2 (1) _ (2) 1.3 (1) - _ 0.5 (1)a 0.5 (1)s - _ 1.0 (1) 1.0 (1) 4.0 (4) 1.0 (1) (2) 2.2 (2) 2.3 (2) 1.2 (1) 2.9 (3) 1.0 (1) (1) Total N-terminus None Thr Met Met Val Cys(Cm) Cys(Cm) Ala Lys Glu a Sequence analysis reveals that the peptide contains Val-Ile. Incomplete hydrolysis of this bond explains the low recovery of Val and Ile in TS1. sion that peptides A and B originate from identical positions in two different subunits. Structural evidence is thus obtained that all protein chains of human liver alcohol dehydrogenase are not identical; at least two types with different but similar primary structures are synthesized. The valine/alanine exchange is compatible with a onebase mutation in the genetic code [22]. Peptides TN1, TN2 and TN3. These peptides contain 11, 2 and 2 residues, respectively. All were degraded by the dansyl-edman method to show the complete amino acid sequences, Val-Ile-Pro- Leu-Phe-Thr-Pro-Gln-Cys(Cm)-Gly-Lys for TN1, Cys(Cm)-Arg for TN2 and Cys(Cm)-Lys for TN3, in full agreement with the total compositions (Table 1). The amide group in TN1 is evident from the electrophoretic mobility [23] at ph 6.5 (Table 1). Peptides TB1, TB2 and TAl. Peptide TB1 contains six and peptide TB2 eight residues (Table 1). Both were degraded by the dansyl-edman method to show the complete amino acid sequences, Ala-Ala-Gly-Ala-Ala-Arg for TB1 and Lys-Pro-Ile- Gln-Glu-Val-Leu-Lys for TB2, in agreement with the total compositions (Table 1). The amide group in TB2 was positioned by determinations of the electrophoretic mobility 1231 at ph 6.5 of samples 19 Eur. J. Biochem., Vo1.25 withdrawn before and after the Edman steps removing the dicarboxylic residues. Peptide TAl contains 14 residues (Table 1) and the order of the first 12 was determined by the dansyl-edman method. The amino acid sequence obtained was in agreement with the total composition, which also showed the remaining two residues to be tyrosine and lysine. Lysine must be C-terminal as it as a tryptic peptide and the amino acid sequence obtained is then Glu- Leu- Gly- Ala-Thr-Glx -Cys( Cm)-Ile- Asx-Pro- Glx- Asx- Tyr-Lys. The electrophoretic mobility (Table 1) shows that the peptide contains two amide groups [23]. The mobility of a sample withdrawn after the first Edman step showed the first residue to have a free carboxyl group but sufficient material was not available for positioning the two amide groups on the remaining dicarboxylic acid residues. Comparison between the Structures of Alcohol Dehydrogeme from Human and Horse Liver The homology between liver alcohol dehydrogenases from these two species, already inferred from the peptide maps, can now be more accurately outlined. In Table 2 the structures of the ten peptides N,
6 288 Structural Studies of Human Liver Alcohol Dehydrogenase Eur. J. Biochem. Table 2. Comparison between the structures of ten tryptic peptides of human liver alcohol dehydrogenase and the corresponding regions of the horse enzyme Residues constituting species differences are printed in bold type. Numbers above the residues refer to the positions in the protein chain of horse liver alcohol dehydrogenase [24]. The alternative residues at positions 94 and 101 indicate the known differences [9] between the E-subunit (above) and the S-subunit (below) of the horse enzyme Horse:..-Cys(Cm)-Lys-..-Met-Val-Ala-Thr-Gly-Ile-Cys(Cm)-Arg-. Human : Acetyl-Ser-Thr-Ala-Gly-Lys-..-Cys(Cm)-Lys-..-Met-Val-Ala-Val -Gly-Ile-Cys(Cm)-Arg-... c N + +-TN A- +..-Met-Va.1-Ala-Ala-Gly-Ile-Cys(Cm)-Arg-... c -B Val-Ile-Pro-Leu-Phe-Thr-Pro-Gln-Cys(Cm)-Gly-Lys-Cys(Cm)-Arg-...-Ala-Ala-Gly-Bla- Ala- Arg-... Ile...-Val-Ile-Pro-Leu-Phe-Thr-Pro-Gln-Cys(Cm)-Gly-Lys-Cys(Cm)-Arg-...-Ala- Ala-Gly- Ala-Ala-Arg-... c TN1 + +TN2-+ C- TB Glu- Val -Gly-Ala-Thr-Glu-Cys(Cm)-Val-Asn-Pro-Gln-Asp-Tyr-Lys-Lys-Pro-Ile-Gln-Glu-Val-Leu-Thr-....-Glu-Leu-Gly-Ala-Th-Glx-Cys(Cm)- Ile -Asx-Pro-Glx-Asx-Tyr-Lys-Lys-Pro-Ile-Gln-Glu-Val-Leu-Lys-... c TA1 ++- TB Thr-Ile-Leu-Thr-Phe....-Thr-Val-Leu-Thr-Phe. C-C- -+ Ser.. C, A, B, TN1, TN2, TN3, TB1, TB2 and TAl, reported above, are compared with the corresponding regions of the horse enzyme. The results show that the protein chains of human liver alcohol dehydrogenase are, within narrow limits, identical in size to those of the horse enzyme; the terminal peptides, the peptide containing the active site cysteine residue and seven other peptides analysed are either identical or strictly homologous in the enzymes from the two different species. No deletions or insertions have been detected. The subunit size of human liver alcohol dehydrogenase is thus about, [24] and the dimeric molecular weight which is lower than the previously reported value [5]. The peptides contain 61 residues and amino acid differences are found at only 5 positions. The degree of similarity between the two enzymes in the regions investigated is thus 92 Ole. Most amino acid exchanges are highly conservative and all are compatible with one-base mutations in the genetic code [22]. The threonine/lysine exchange at position 255 (Table 2) explains one of the marked differences in the tryptic peptide maps. Due to the lysine residue at this position the basic peptide TB2 is peculiar to the peptide map of the human enzyme whereas this region in the horse enzme is covered by a larger, almost insoluble peptide [24]. The other amino acid differences detected only affect neutral residues and the three valine/isoleucine/leucine exchanges at positions 235, 241 and 371 are not detectable in the peptide maps. Subunit Differences in the Human Enzyme Peptides A and B establish the presence of two types of subunits in human liver alcohol dehydrogenase. They differ by a valinelalanine exchange at the position corresponding to No. 43 in the protein chain of the horse enzyme. The two alternative sequences occur in approximately equal amounts as judged both by the peptide maps (Fig.2) and the recoveries (Table 1). Split and weak spots in the fingerprint experiments also indicate that differences occur at a few other positions. The strengths of these split spots are not always half the general spot density as in the case of peptides A and B. The presence of more types of subunits in different relative amounts is therefore not excluded. The subunit differences found in human liver alcohol dehydrogenase are not identical to those detected in the horse enzyme. DISCUSSION Species Variation The purified peptides from human liver alcohol dehydrogenase represent nearly one quarter of the tryptic peptides and include both those (e.g. N and TN1) which are indistinguishable from the corre-
7 Vol.25, No.2,1972 H. JORNYALL and R. PIETRUSZKO 289 sponding horse peptides in the peptide maps and those (e.g. A and TR2) which differ in the fingerprint experiments. It is therefore probable that the identity of 92 between these regions of the enzymes from the two different species should be a fairly good estimation of the total relatedness between their structures. This figure gives an indication of the rate of evolutionary divergence in liver alcohol dehydrogenase. The high degree of similarity between the human and equine enzymes is also supported by the fact that all differences found are compatible with one-base mutations. Isoenzynies The presence of subunits with different primary structures offers an explanation for the occurrence of isoenzymes of human liver alcohol dehydrogenase. Two different types of subunit were found, and additional types are not excluded, in the enzyme preparation investigated. The two subunits identified are essentially similar but differ at some positions. One of these is where valine and alanine are found in about equimolar ratio at the position corresponding to No. 43 in the sequence of the horse protein chain. The enzyme preparation studied contained isoenzymes 1 and 2 [3] in about equal amounts and this may be related to the two types of protein chain detected. Neither of these isoenzymes is, however, homogeneous [3] although they have no common subunits [3]. A full investigation of the subunit differences and isoenzyme relationships will need a further separation of all isoenzymes which is not obtained with the present purification method. The valinelalanine difference between the human subunits is not present in the two types of horse subunits which contain threonine at this position (No. 43 [19]). Also, two of the amino acid exchanges (at positions 94 and 101 [9]) between the E and S subunits of the horse enzyme correspond to the human peptides TN1 and TN2, respectively (Table 2), which show no evidence of heterogeneity and are recovered in good yield (Table I). It may thus be concluded that the subunit differences of the human enzyme on the one hand and the horse E and S subunits on the other are found at different positions. In addition, the structural differences between subunits from the two species seem greater than those between the subunits within either species, although peptide maps do not reveal all differences between similar structures. Isoenzymes may therefore have evolved independently in the two species. Even in the case of the human enzyme, however, different chromosomal alcohol dehydrogenase loci seem likely, as in the horse [9] ; developmental changes are known [2] and all adult livers examined [25,2,3] have had a complicated 10 isoenzyme picture with at least two forms, isoenzyme 1 and 2 [3], which does not support a pure allelic variation. Structure-Punction Relatiomhips The isoenzymes of human liver alcohol dehydrogenase do not possess the substrate specificity difference [3] against ethanol and steroid alcohols which the horse isoenzymes have. The latter variation, therefore, seems attributable to the particular amino acid differences between the horse E and S subunits, which support the earlier conclusion [9] that at least some of these amino acids may be directly involved in the substrate binding. Finally, it may be noticed that the structural difference between the human and horse enzymes at position 43 (Table 2) is only three residues away from the reactive active site cysteine residue (No. 46). Other differences close to this position are also found in the rat enzyme [26]. This variability around the reactive cysteine residue in alcohol dehydrogenase of mammal species is in contrast to the constant region around the active site cysteine residue in another dehydrogenase, glyceraldehyde- 3-phosphate dehydrogenase, of widely different species [27,28]. Although the active site cysteine residues are selectively reactive towards iodoacetate in both enzymes and essential to the activity [21], the evolutionary differences in the surrounding regions may indicate that the reactive cysteine residues in these two dehydrogenases have different functions. The authors are indebted to Professor H. Theorell for much valuable help and support. Grants from the Swedish Medical Research Council for this work to Professor Theorell and to one of the authors (H. J.) are gratefully acknowledged. REFERENCES 1. Moser, K., Papenberg, J., and von Wartburg, J. P., Enzumol. Biol. Clin. 9 (1968) Pikkaiainen, P., and Raiha, N. C. R., Nature (London), 222 (1969) Pietruszko. R.. and Theorell. H.. unnublished results. 4. von Wartburi, J.-P., Papenberg, J.: and Aebi, H., Can. J. Biochem. 43 (1965) von Wartburg, J.-P., Bethune, J. L., and Vallee, B. L., Biochemistry, 3 (1964) Blair, A. H., and Vallee, B. L., Biochemistry, 5 (1966) Mourad. N.. and Woronick. C. L.. Arch. Biochem. Biophys. 121(1967) Schenker. T. M., and von Warbure, J. P., Exflerientia, Y, (1970) 687; 9. Jornvall, H., Eur. J. Biochem. 16 (1970) Ryle, A. P., Sanger, F., Smith, L. F., and Kitai, R., Biochem. J. 60 (1955) Brown, J. R., and Hartley, B. S., Biochem. J. 101 (1966) Harris, J. I., and Perham, R. N., J. MoZ. Biol. 13 (1965) 876.
8 290 H. JORNVALL and R. PIETRUSZKO: Structural Studies of Human Liver Alcohol Dehydrogenase Eur. J. Biochem. 13. Heilmann, J., Barrollier, J., and Watzke, E., Hoppe- Seyler s 2. Physiol. Chem. 309 (1957) Ambler, R. P., Biochem. J. 89 (1963) Gray, W. R., and Hartley, B. S., Biochem. J. 89 (1963) 379 and 59P. 16. Gray, W. R., Methods Enzymol. 11 (1967) Gray, W. R., and Smith, J. F., Anal. Biochem. 33 (1970) Woods, K. R., and Wang, K.-T., Biochim. Biophys. Acta, 133 (1967) Jornvall, H., Eur. J. Biochem. 14 (1970) Li, T.-K., and Vallee, B. L., Biochemistry, 3 (1964) Harris, I., Nature (London), 203 (1964) Nirenberg, M., Leder, P., Bernfield, M., Brimacombe, R., Trupin, J., Rottman, P., and O Neal, C., Proc. Nut. A d. Sci. U. S. A. 53 (1965) Offord, R. E., Nature (London), 211 (1966) Jornvall, H., Eur. J. Biochem. 16 (1970) von Wartburg, J. P., and Schiirch, P. M., Ann. N.Y. Acad. Sci. 151 (1968) Jornvall, H., and MarkoviE, O., unpublished results. 27. Allison, W. S., Ann. N.Y. A d. Sci. 151 (1968) Perham, R. N., Biochem. J. 111 (1969) 17. H. Jornvall Kemiska Institutionen I, Karolinska Institutet Solnavagen 1, S Stockholm 60, Sweden R. Pietrusxko s present address: Center of Alcohol Studies, Rutgers University New Brunswick, New- Jersey 08903, U.S.A.
LAB#23: Biochemical Evidence of Evolution Name: Period Date :
LAB#23: Biochemical Evidence of Name: Period Date : Laboratory Experience #23 Bridge Worth 80 Lab Minutes If two organisms have similar portions of DNA (genes), these organisms will probably make similar
More informationCS612 - Algorithms in Bioinformatics
Spring 2016 Protein Structure February 7, 2016 Introduction to Protein Structure A protein is a linear chain of organic molecular building blocks called amino acids. Introduction to Protein Structure Amine
More information1. Describe the relationship of dietary protein and the health of major body systems.
Food Explorations Lab I: The Building Blocks STUDENT LAB INVESTIGATIONS Name: Lab Overview In this investigation, you will be constructing animal and plant proteins using beads to represent the amino acids.
More informationProperties of amino acids in proteins
Properties of amino acids in proteins one of the primary roles of DNA (but far from the only one!!!) is to code for proteins A typical bacterium builds thousands types of proteins, all from ~20 amino acids
More informationObjective: You will be able to explain how the subcomponents of
Objective: You will be able to explain how the subcomponents of nucleic acids determine the properties of that polymer. Do Now: Read the first two paragraphs from enduring understanding 4.A Essential knowledge:
More informationChemistry 121 Winter 17
Chemistry 121 Winter 17 Introduction to Organic Chemistry and Biochemistry Instructor Dr. Upali Siriwardane (Ph.D. Ohio State) E-mail: upali@latech.edu Office: 311 Carson Taylor Hall ; Phone: 318-257-4941;
More informationBiological systems interact, and these systems and their interactions possess complex properties. STOP at enduring understanding 4A
Biological systems interact, and these systems and their interactions possess complex properties. STOP at enduring understanding 4A Homework Watch the Bozeman video called, Biological Molecules Objective:
More informationAmino Acids. Amino Acids. Fundamentals. While their name implies that amino acids are compounds that contain an NH. 3 and CO NH 3
Fundamentals While their name implies that amino acids are compounds that contain an 2 group and a 2 group, these groups are actually present as 3 and 2 respectively. They are classified as α, β, γ, etc..
More informationPage 8/6: The cell. Where to start: Proteins (control a cell) (start/end products)
Page 8/6: The cell Where to start: Proteins (control a cell) (start/end products) Page 11/10: Structural hierarchy Proteins Phenotype of organism 3 Dimensional structure Function by interaction THE PROTEIN
More informationBiomolecules: amino acids
Biomolecules: amino acids Amino acids Amino acids are the building blocks of proteins They are also part of hormones, neurotransmitters and metabolic intermediates There are 20 different amino acids in
More informationIntroduction to Peptide Sequencing
Introduction to Peptide equencing Quadrupole Ion Traps tructural Biophysics Course December 3, 2014 12/8/14 Introduction to Peptide equencing - athan Yates 1 Why are ion traps used to sequence peptides?
More informationAA s are the building blocks of proteins
Chamras Chemistry 106 Lecture otes Chapter 24: Amino Acids, Peptides, and Proteins General Formula: () n (') α-amino Acids: (n = 1) Example: Amino Acids and Proteins: Glycine Alanine Valine AA s are the
More informationChemical Nature of the Amino Acids. Table of a-amino Acids Found in Proteins
Chemical Nature of the Amino Acids All peptides and polypeptides are polymers of alpha-amino acids. There are 20 a- amino acids that are relevant to the make-up of mammalian proteins (see below). Several
More informationReactions and amino acids structure & properties
Lecture 2: Reactions and amino acids structure & properties Dr. Sameh Sarray Hlaoui Common Functional Groups Common Biochemical Reactions AH + B A + BH Oxidation-Reduction A-H + B-OH + energy ª A-B + H
More informationMoorpark College Chemistry 11 Fall Instructor: Professor Gopal. Examination # 5: Section Five May 7, Name: (print)
Moorpark College Chemistry 11 Fall 2013 Instructor: Professor Gopal Examination # 5: Section Five May 7, 2013 Name: (print) Directions: Make sure your examination contains TEN total pages (including this
More informationBIOCHEMISTRY REVIEW. Overview of Biomolecules. Chapter 4 Protein Sequence
BIOCHEMISTRY REVIEW Overview of Biomolecules Chapter 4 Protein Sequence 2 3 4 Are You Getting It?? A molecule of hemoglobin is compared with a molecule of lysozyme. Which characteristics do they share?
More informationMolecular Biology. general transfer: occurs normally in cells. special transfer: occurs only in the laboratory in specific conditions.
Chapter 9: Proteins Molecular Biology replication general transfer: occurs normally in cells transcription special transfer: occurs only in the laboratory in specific conditions translation unknown transfer:
More information9/6/2011. Amino Acids. C α. Nonpolar, aliphatic R groups
Amino Acids Side chains (R groups) vary in: size shape charge hydrogen-bonding capacity hydrophobic character chemical reactivity C α Nonpolar, aliphatic R groups Glycine (Gly, G) Alanine (Ala, A) Valine
More informationGentilucci, Amino Acids, Peptides, and Proteins. Peptides and proteins are polymers of amino acids linked together by amide bonds CH 3
Amino Acids Peptides and proteins are polymers of amino acids linked together by amide bonds Aliphatic Side-Chain Amino Acids - - H CH glycine alanine 3 proline valine CH CH 3 - leucine - isoleucine CH
More information1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids
Amino acids 1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids 5-To understand amino acids synthesis Amino
More informationAmino acids-incorporated nanoflowers with an
Amino acids-incorporated nanoflowers with an intrinsic peroxidase-like activity Zhuo-Fu Wu 1,2,+, Zhi Wang 1,+, Ye Zhang 3, Ya-Li Ma 3, Cheng-Yan He 4, Heng Li 1, Lei Chen 1, Qi-Sheng Huo 3, Lei Wang 1,*
More informationMethionine (Met or M)
Fig. 5-17 Nonpolar Fig. 5-17a Nonpolar Glycine (Gly or G) Alanine (Ala or A) Valine (Val or V) Leucine (Leu or L) Isoleucine (Ile or I) Methionine (Met or M) Phenylalanine (Phe or F) Polar Trypotphan (Trp
More informationBiomolecules Amino Acids & Protein Chemistry
Biochemistry Department Date: 17/9/ 2017 Biomolecules Amino Acids & Protein Chemistry Prof.Dr./ FAYDA Elazazy Professor of Biochemistry and Molecular Biology Intended Learning Outcomes ILOs By the end
More informationMidterm 1 Last, First
Midterm 1 BIS 105 Prof. T. Murphy April 23, 2014 There should be 6 pages in this exam. Exam instructions (1) Please write your name on the top of every page of the exam (2) Show all work for full credit
More informationProteins are sometimes only produced in one cell type or cell compartment (brain has 15,000 expressed proteins, gut has 2,000).
Lecture 2: Principles of Protein Structure: Amino Acids Why study proteins? Proteins underpin every aspect of biological activity and therefore are targets for drug design and medicinal therapy, and in
More informationLipids: diverse group of hydrophobic molecules
Lipids: diverse group of hydrophobic molecules Lipids only macromolecules that do not form polymers li3le or no affinity for water hydrophobic consist mostly of hydrocarbons nonpolar covalent bonds fats
More informationFor questions 1-4, match the carbohydrate with its size/functional group name:
Chemistry 11 Fall 2013 Examination #5 PRACTICE 1 For the first portion of this exam, select the best answer choice for the questions below and mark the answers on your scantron. Then answer the free response
More informationPROTEINS. Building blocks, structure and function. Aim: You will have a clear picture of protein construction and their general properties
PROTEINS Building blocks, structure and function Aim: You will have a clear picture of protein construction and their general properties Reading materials: Compendium in Biochemistry, page 13-49. Microbiology,
More informationIdentification of free amino acids in several crude extracts of two legumes
1 2 Identification of free amino acids in several crude extracts of two legumes using Thin Layer Chromatography 3 Authors 4 5 6 7 8 9 Taghread Hudaib Key words 10 11 12 13 14 15 16 17 18 19 20 Amino acids;
More informationLecture 4. Grouping Amino Acid 7/1/10. Proteins. Amino Acids. Where Are Proteins Located. Nonpolar Amino Acids
Proteins Lecture 4 Proteins - Composition of Proteins (Amino Acids) Chapter 21 ection 1-6! Proteins are compounds of high molar mass consisting almost entirely of amino acid chain(s)! Molar masses range
More informationCells N5 Homework book
1 Cells N5 Homework book 2 Homework 1 3 4 5 Homework2 Cell Ultrastructure and Membrane 1. Name and give the function of the numbered organelles in the cell below: A E B D C 2. Name 3 structures you might
More informationAP Bio. Protiens Chapter 5 1
Concept.4: Proteins have many structures, resulting in a wide range of functions Proteins account for more than 0% of the dry mass of most cells Protein functions include structural support, storage, transport,
More informationAmino Acids. Review I: Protein Structure. Amino Acids: Structures. Amino Acids (contd.) Rajan Munshi
Review I: Protein Structure Rajan Munshi BBSI @ Pitt 2005 Department of Computational Biology University of Pittsburgh School of Medicine May 24, 2005 Amino Acids Building blocks of proteins 20 amino acids
More informationThe Structure and Function of Macromolecules
The Structure and Function of Macromolecules Macromolecules are polymers Polymer long molecule consisting of many similar building blocks. Monomer the small building block molecules. Carbohydrates, proteins
More informationProteins are a major component of dissolved organic nitrogen (DON) leached from terrestrially aged Eucalyptus camaldulensis leaves
Environ. Chem. 216, 13, 877 887 doi:1.171/en165_ac CSIRO 216 Supplementary material Proteins are a major component of dissolved organic nitrogen (DON) leached from terrestrially aged Eucalyptus camaldulensis
More informationThe Structure and Function of Large Biological Molecules Part 4: Proteins Chapter 5
Key Concepts: The Structure and Function of Large Biological Molecules Part 4: Proteins Chapter 5 Proteins include a diversity of structures, resulting in a wide range of functions Proteins Enzymatic s
More information(30 pts.) 16. (24 pts.) 17. (20 pts.) 18. (16 pts.) 19. (5 pts.) 20. (5 pts.) TOTAL (100 points)
Moorpark College Chemistry 11 Spring 2009 Instructor: Professor Torres Examination # 5: Section Five April 30, 2009 ame: (print) ame: (sign) Directions: Make sure your examination contains TWELVE total
More informationShort polymer. Dehydration removes a water molecule, forming a new bond. Longer polymer (a) Dehydration reaction in the synthesis of a polymer
HO 1 2 3 H HO H Short polymer Dehydration removes a water molecule, forming a new bond Unlinked monomer H 2 O HO 1 2 3 4 H Longer polymer (a) Dehydration reaction in the synthesis of a polymer HO 1 2 3
More information2. Which of the following amino acids is most likely to be found on the outer surface of a properly folded protein?
Name: WHITE Student Number: Answer the following questions on the computer scoring sheet. 1 mark each 1. Which of the following amino acids would have the highest relative mobility R f in normal thin layer
More informationTowards a New Paradigm in Scientific Notation Patterns of Periodicity among Proteinogenic Amino Acids [Abridged Version]
Earth/matriX: SCIENCE TODAY Towards a New Paradigm in Scientific Notation Patterns of Periodicity among Proteinogenic Amino Acids [Abridged Version] By Charles William Johnson Earth/matriX Editions P.O.
More informationCHAPTER 21: Amino Acids, Proteins, & Enzymes. General, Organic, & Biological Chemistry Janice Gorzynski Smith
CHAPTER 21: Amino Acids, Proteins, & Enzymes General, Organic, & Biological Chemistry Janice Gorzynski Smith CHAPTER 21: Amino Acids, Proteins, Enzymes Learning Objectives: q The 20 common, naturally occurring
More informationTHE AMINO ACID SEQUENCE OF HYPERTENSIN II
THE AMINO ACID SEQUENCE OF HYPERTENSIN II BY LEONARD T. SKEGGS, JR., PH.D., KENNETH E. LENTZ, PH.D., JOSEPH R. KAHN, M.D., NORMAN P. SHUMWAY, M.D., ~'D KENNETH R. WOODS, I~.D. (From the Department of Medicine
More informationCopyright 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Concept 5.4: Proteins have many structures, resulting in a wide range of functions Proteins account for more than 50% of the dry mass of most cells Protein functions include structural support, storage,
More informationProtein Investigator. Protein Investigator - 3
Protein Investigator Objectives To learn more about the interactions that govern protein structure. To test hypotheses regarding protein structure and function. To design proteins with specific shapes.
More information1. (38 pts.) 2. (25 pts.) 3. (15 pts.) 4. (12 pts.) 5. (10 pts.) Bonus (12 pts.) TOTAL (100 points)
Moorpark College Chemistry 11 Spring 2010 Instructor: Professor Torres Examination #5: Section Five May 4, 2010 ame: (print) ame: (sign) Directions: Make sure your examination contains TWELVE total pages
More informationIf you like us, please share us on social media. The latest UCD Hyperlibrary newsletter is now complete, check it out.
Sign In Forgot Password Register username username password password Sign In If you like us, please share us on social media. The latest UCD Hyperlibrary newsletter is now complete, check it out. ChemWiki
More informationClassification of amino acids: -
Page 1 of 8 P roteinogenic amino acids, also known as standard, normal or primary amino acids are 20 amino acids that are incorporated in proteins and that are coded in the standard genetic code (subunit
More informationMacromolecules of Life -3 Amino Acids & Proteins
Macromolecules of Life -3 Amino Acids & Proteins Shu-Ping Lin, Ph.D. Institute of Biomedical Engineering E-mail: splin@dragon.nchu.edu.tw Website: http://web.nchu.edu.tw/pweb/users/splin/ Amino Acids Proteins
More informationFundamentals of Organic Chemistry CHEM 109 For Students of Health Colleges
Fundamentals of Organic Chemistry CHEM 109 For Students of Health Colleges Credit hrs.: (2+1) King Saud University College of Science, Chemistry Department CHEM 109 CHAPTER 9. AMINO ACIDS, PEPTIDES AND
More informationPractice Problems 3. a. What is the name of the bond formed between two amino acids? Are these bonds free to rotate?
Life Sciences 1a Practice Problems 3 1. Draw the oligopeptide for Ala-Phe-Gly-Thr-Asp. You do not need to indicate the stereochemistry of the sidechains. Denote with arrows the bonds formed between the
More informationIntroduction to Biochemistry Midterm exam )ومن أحياها(
Introduction to Biochemistry Midterm exam 2016-2017 )ومن أحياها( 1. Which of the following amino (in a peptide chain) would probably be found at a beta bend or turn? a. lysine * b. Gly c. arg d. asn 2.
More informationThis exam consists of two parts. Part I is multiple choice. Each of these 25 questions is worth 2 points.
MBB 407/511 Molecular Biology and Biochemistry First Examination - October 1, 2002 Name Social Security Number This exam consists of two parts. Part I is multiple choice. Each of these 25 questions is
More informationChapter 4: Information and Knowledge in the Protein Insulin
Chapter 4: Information and Knowledge in the Protein Insulin This chapter will calculate the information and molecular knowledge in a real protein. The techniques discussed in this chapter to calculate
More informationFour Classes of Biological Macromolecules. Biological Macromolecules. Lipids
Biological Macromolecules Much larger than other par4cles found in cells Made up of smaller subunits Found in all cells Great diversity of func4ons Four Classes of Biological Macromolecules Lipids Polysaccharides
More informationSaccharomyces cerevisiae*
THE JOURNAL OF BIOLOGICAL CHEMISTRY 1988 by The American Society for Biochemistry and Molecular Biology, Inc. Vol. 263, No. 29, Issue of October 15, pp. 14948-14955, 1988 Printed in U.S.A. Purification
More informationBIO th September, 1997
BIO 451 26th September, 1997 EXAM I This exam will be taken apart for grading. Please PRINT your name on each page. If you do not have sufficient room for your answer in the space provided, please continue
More informationFor questions 1-4, match the carbohydrate with its size/functional group name:
Chemistry 11 Fall 2013 Examination #5 PRACTICE 1 ANSWERS For the first portion of this exam, select the best answer choice for the questions below and mark the answers on your scantron. Then answer the
More information2. Ionization Sources 3. Mass Analyzers 4. Tandem Mass Spectrometry
Dr. Sanjeeva Srivastava 1. Fundamental of Mass Spectrometry Role of MS and basic concepts 2. Ionization Sources 3. Mass Analyzers 4. Tandem Mass Spectrometry 2 1 MS basic concepts Mass spectrometry - technique
More informationLecture 3: 8/24. CHAPTER 3 Amino Acids
Lecture 3: 8/24 CHAPTER 3 Amino Acids 1 Chapter 3 Outline 2 Amino Acid Are Biomolecules and their Atoms Can Be Visualized by Two Different Ways 1) Fischer projections: Two dimensional representation of
More information9/16/15. Properties of Water. Benefits of Water. More properties of water
Properties of Water Solid/Liquid Density Water is densest at 4⁰C Ice floats Allows life under the ice Hydrogen bond Ice Hydrogen bonds are stable Liquid water Hydrogen bonds break and re-form Benefits
More informationAMINO ACIDS STRUCTURE, CLASSIFICATION, PROPERTIES. PRIMARY STRUCTURE OF PROTEINS
AMINO ACIDS STRUCTURE, CLASSIFICATION, PROPERTIES. PRIMARY STRUCTURE OF PROTEINS Elena Rivneac PhD, Associate Professor Department of Biochemistry and Clinical Biochemistry State University of Medicine
More informationTrypsin digestion: The lyophilized powder of the reduced S-carboxymethylated ACID) BETWEEN NORMAL (B+) AND THE COMMON NEGRO VARIANT
A SINGLE AMINO ACID SUBSTITUTION (ASPARAGINE TO ASPARTIC ACID) BETWEEN NORMAL (B+) AND THE COMMON NEGRO VARIANT (A+) OF HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE* BY AKIRA YOSHIDA DIVISION OF MEDICAL GENETICS,
More informationBCHS 3304/ Exam I. September 26,
Name: 5.5.# BCHS 3304/ Exam I September 26, 2002............... Instructions: 1. There are 13 pages to this exam. Count pages prior to beginning exam. You may use the back pages of the exam as scratch
More informationCells. Variation and Function of Cells
Cells Variation and Function of Cells Plasma Membrane= the skin of a cell, it protects and nourishes the cell while communicating with other cells at the same time. Lipid means fat and they are hydrophobic
More informationChapter 3: Amino Acids and Peptides
Chapter 3: Amino Acids and Peptides BINF 6101/8101, Spring 2018 Outline 1. Overall amino acid structure 2. Amino acid stereochemistry 3. Amino acid sidechain structure & classification 4. Non-standard
More informationof Androctonus australis Hector
Eur. J. Biochem. 7 (7) - The Amino Acid Sequence of Neurotoxin I of Androctonus australis Hector Her& ROCHAT, Catherine ROCHAT, Franpois MIRANDA, Serge LISSITZKY, and Pehr EDMAN Laboratoire de Biochimie
More informationIntroduction to Protein Structure Collection
Introduction to Protein Structure Collection Teaching Points This collection is designed to introduce students to the concepts of protein structure and biochemistry. Different activities guide students
More informationPROTEINS. Amino acids are the building blocks of proteins. Acid L-form * * Lecture 6 Macromolecules #2 O = N -C -C-O.
Proteins: Linear polymers of amino acids workhorses of the cell tools, machines & scaffolds Lecture 6 Macromolecules #2 PRTEINS 1 Enzymes catalysts that mediate reactions, increase reaction rate Structural
More informationCHM333 LECTURE 6: 1/25/12 SPRING 2012 Professor Christine Hrycyna AMINO ACIDS II: CLASSIFICATION AND CHEMICAL CHARACTERISTICS OF EACH AMINO ACID:
AMINO ACIDS II: CLASSIFICATION AND CHEMICAL CHARACTERISTICS OF EACH AMINO ACID: - The R group side chains on amino acids are VERY important. o Determine the properties of the amino acid itself o Determine
More informationIntroduction to proteins and protein structure
Introduction to proteins and protein structure The questions and answers below constitute an introduction to the fundamental principles of protein structure. They are all available at [link]. What are
More information(65 pts.) 27. (10 pts.) 28. (15 pts.) 29. (10 pts.) TOTAL (100 points) Moorpark College Chemistry 11 Spring Instructor: Professor Gopal
Moorpark College Chemistry 11 Spring 2012 Instructor: Professor Gopal Examination # 5: Section Five May 1, 2012 Name: (print) GOOD LUCK! Directions: Make sure your examination contains TWELVE total pages
More informationChapter 20 and GHW#10 Questions. Proteins
Chapter 20 and GHW#10 Questions Proteins Proteins Naturally occurring bioorganic polyamide polymers containing a sequence of various combinations of 20 amino acids. Amino acids contain the elements carbon,
More informationPrevious Class. Today. Detection of enzymatic intermediates: Protein tyrosine phosphatase mechanism. Protein Kinase Catalytic Properties
Previous Class Detection of enzymatic intermediates: Protein tyrosine phosphatase mechanism Today Protein Kinase Catalytic Properties Protein Phosphorylation Phosphorylation: key protein modification
More informationHuman Biochemistry Option B
Human Biochemistry Option B A look ahead... Your body has many functions to perform every day: Structural support, genetic information, communication, energy supply, metabolism Right now, thousands of
More informationBCMB Chapter 3 (part1)
Chapter 3 (with parts of 4 and 5) Amino Acids and Primary Structures of Proteins BCMB 3100 - Chapter 3 (part1) Diversity of protein function Complete definition of amino acids Memorize complete structure
More informationThird Exam Practice Test
Third Exam Practice Test 1. A mixture of aspartic acid, methionine and arginine can be separated by electrophoresis. Explain how this would be done and what exactly happens during the separation. What
More informationMacromolecules Structure and Function
Macromolecules Structure and Function Within cells, small organic molecules (monomers) are joined together to form larger molecules (polymers). Macromolecules are large molecules composed of thousands
More informationNature Methods: doi: /nmeth Supplementary Figure 1
Supplementary Figure 1 Subtiligase-catalyzed ligations with ubiquitin thioesters and 10-mer biotinylated peptides. (a) General scheme for ligations between ubiquitin thioesters and 10-mer, biotinylated
More informationArginine side chain interactions and the role of arginine as a mobile charge carrier in voltage sensitive ion channels. Supplementary Information
Arginine side chain interactions and the role of arginine as a mobile charge carrier in voltage sensitive ion channels Craig T. Armstrong, Philip E. Mason, J. L. Ross Anderson and Christopher E. Dempsey
More informationspecificity." Whereas trypsin acts almost exclusively on peptide bonds properties.1 These include molecular weights (approximately 25,000 and 24,000,
884 BIOCHEMISTRY: WALSH AND NEURATH PROC. N. A. S. 22 Craig, L. G., W. Koenigsberg, and R. J. Hill, Amino Acids and Peptides with Antimetabolic Activity, CIBA Foundation Symposium (1958), p. 226. 23 Du
More informationREAD THIS FIRST. Your Name
Introduction to Biochemistry Final Examination - Individual (Part I) Monday, 24 May 2010 7:00 8:45 PM H. B. White Instructor 120 Points Your Name "Ability is what you're capable of doing. Motivation determines
More informationCahn - Ingold - Prelog system. Proteins: Evolution, and Analysis Lecture 7 9/15/2009. The Fischer Convention (1) G (2) (3)
Chapter 4 (1) G Proteins: Evolution, and Analysis Lecture 7 9/15/2009 A V L I M P F W Chapter 4 (2) S (3) T N Q Y C K R H D E The Fischer Convention Absolute configuration about an asymmetric carbon related
More informationStudy of Amino Acids in DDGS
Study of Amino Acids in DDGS Y. Zhang, J. V. Simpson and B. A. Wrenn National Corn-to-Ethanol Research Center Edwardsville, IL 62025 Hans Stein University of Illinois Urbana Champaign Gerald C. Shurson
More informationSection 1 Proteins and Proteomics
Section 1 Proteins and Proteomics Learning Objectives At the end of this assignment, you should be able to: 1. Draw the chemical structure of an amino acid and small peptide. 2. Describe the difference
More informationAmino Acids. Lecture 4: Margaret A. Daugherty. Fall Swiss-prot database: How many proteins? From where?
Lecture 4: Amino Acids Margaret A. Daugherty Fall 2004 Swiss-prot database: How many proteins? From where? 1986 Use http://us.expasy.org to get to swiss-prot database Proteins are the workhorses of the
More informationBCMB 3100 Chapter 3 (part 1)
BCMB 3100 Chapter 3 (part 1) Diversity of protein function Complete definition of amino acids Memorize complete structure of 20 common amino acids!!! pka s of amino and carboxyl groups Amino acids with
More informationBiochemistry - I. Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture 1 Amino Acids I
Biochemistry - I Prof. S. Dasgupta Department of Chemistry Indian Institute of Technology, Kharagpur Lecture 1 Amino Acids I Hello, welcome to the course Biochemistry 1 conducted by me Dr. S Dasgupta,
More informationA Chemical Look at Proteins: Workhorses of the Cell
A Chemical Look at Proteins: Workhorses of the Cell A A Life ciences 1a Lecture otes et 4 pring 2006 Prof. Daniel Kahne Life requires chemistry 2 amino acid monomer and it is proteins that make the chemistry
More informationGL Science Inertsearch for LC Inertsil Applications - Acids. Data No. Column Data Title Solutes Eluent Detection Data No.
GL Science Inertsearch for LC Inertsil Applications: Acids For complete Product Description, Chromatograms Price & Delivery in Australia & New Zealand contact info@winlab.com.au or call 61 (0)7 3205 1209
More informationName. The following exam contains 44 questions, valued at 2.6 points/question. 2. Which of the following is not a principal use of proteins?
Chemistry 131 Exam 3 Practice Proteins, Enzymes, and Carbohydrates Spring 2018 Name The following exam contains 44 questions, valued at 2.6 points/question 1. Which of the following is a protein? a. Amylase
More informationIntroduction. Basic Structural Principles PDB
BCHS 6229 Protein Structure and Function Lecture 1 (October 11, 2011) Introduction Basic Structural Principles PDB 1 Overview Main Goals: Carry out a rapid review of the essentials of protein structure
More informationMoorpark College Chemistry 11 Fall Instructor: Professor Gopal. Examination #5: Section Five December 7, Name: (print) Section:
Moorpark College Chemistry 11 Fall 2011 Instructor: Professor Gopal Examination #5: Section Five December 7, 2011 Name: (print) Section: alkene < alkyne < amine < alcohol < ketone < aldehyde < amide
More informationLocalization of Methylated Arginine in the Al Protein from Myelin
Proc. Nat. Acad. Sci. USA Vol. 68, No. 4, pp. 765-769, April 1971 Localization of Methylated Arginine in the Al Protein from Myelin STEVEN BROSTOFF AND E. H. EYLAR The Salk Institute, San Diego, California
More informationAmino Acid Sequence of Chicken Heart Cytochrome c
THE JOURNAI, OF ~~I~LOGICAL CHEMISTRY Vol. 241, No. 2, Issue of January 25, 1966 Printed in U.S.A. Amino Acid Sequence of Chicken Heart Cytochrome c (Received for publication, August 30, 1965) s. K. CHART
More informationDate: EXERCISE 4. Figure 1. Amino acid structure.
Student s name: Date: Points: Assistant s signature: Index numer: /6 EXERISE 4 AMIN AIDS AND PRTEINS. Amino acids are structural units (monomers) of proteins. There are 20 different amino acids coded for
More informationChapter 2 Biosynthesis of Enzymes
Chapter 2 Biosynthesis of Enzymes 2.1 Basic Enzyme Chemistry 2.1.1 Amino Acids An amino acid is a molecule that has the following formula: The central carbon atom covalently bonded by amino, carboxyl,
More informationPhenylketonuria (PKU) Structure of Phenylalanine Hydroxylase. Biol 405 Molecular Medicine
Phenylketonuria (PKU) Structure of Phenylalanine Hydroxylase Biol 405 Molecular Medicine 1998 Crystal structure of phenylalanine hydroxylase solved. The polypeptide consists of three regions: Regulatory
More informationApplication of a new capillary HPLC- ICP-MS interface to the identification of selenium-containing proteins in selenized yeast
Application of a new capillary HPLC- ICP-MS interface to the identification of selenium-containing proteins in selenized yeast Application note Food supplements Authors Juliusz Bianga and Joanna Szpunar
More information(1373 Aspartic Acid >Asparagine)
J. med. Genet. (1968). 5, 107. Haemoglobin Korle-Bu (1373 Aspartic Acid >Asparagine) Showinga One of the Two Amino Acid Substitutions of Haemoglobin C Harlem F. I. D. KONOTEY-AHULU, E. GALLO*, H. LEHMANN,
More information