Omri Barak Curriculum Vitae

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1 Education Omri Barak Curriculum Vitae February 4, 2014 Assistant professor, Rappaport faculty of Medicine Technion Israel Institute of Technology, Haifa, Israel. Web: Weizmann Institute of Science, Rehovot, Israel PhD Life Science Title of Thesis: Working memory in recurrent neural networks with dynamic synapses. Advisor: Professor Misha Tsodyks Weizmann Institute of Science, Rehovot, Israel M.Sc Life Science Title of Thesis: Recognition by Variance: Learning rules for spatiotemporal patterns. Advisor: Professor Misha Tsodyks Technion - Israel Institute of Technology, Haifa, Israel B.A (summa cum laude) Mathematics - Physics Alumni of the Technion Excellence program. GPA: 96.5 Courses and Workshops 2006 Methods in computational neuroscience Marine Biological Laboratory, Woods Hole, MA Winter School of Life Science Institute of advanced studies, Hebrew university, Israel 2006 School of Smell 2005 School of Dendrites 1

2 2004 School of Imaging Awards and Honors Rothschild fellowship for postdoctoral studies Brainpower for Israel foundation fellowship Member of the Azrieli foundation fellows program (5 graduate science students in Israel per year) Fellowship by the Kahn Family Research Center for Systems Biology of the Human Cell Knesset (Israeli Parliament) Education Committee s outstanding students list Technion President s list Member of the Technion Excellence program. Research grants Marie Curie Reintegration grant Understanding the interaction between timescales of single neurons, networks and the environment. Work Experience 2012 present Assistant Professor at the Rappaport faculty of 2

3 Medicine, Technion - Israel Institute of Technology, Haifa, Israel Postdoc with Stefano Fusi and Larry Abbott at the Center for Theoretical Neuroscience, Columbia University, New York, NY Weizmann Institute of Science, Rehovot, Israel First year MSc rotations in the labs of: Dov Sagi & Misha Tsodyks: psychophysical experiments and data analysis. Ilan Lampl: In vivo intracellular recording from rat barrel cortex. Examining the statistical significance of motifs. Ehud Ahissar: Mutual information analysis of in vivo extracellular recording from rat trigeminal neurons during active whisking Technion - Israel Institute of Technology, Haifa, Israel Research assistant under the supervision of Moshe Gur. Creating computer stimuli for fmri experiments World Wide Commerce Inc., Ramat-Gan, Israel. Programmer. Collaborations 2013 UAM, Madrid, Spain. Nestor Parga and Federico Carnevale Ecole normale Supérieure, Paris, France. Work with Gianluigi Mongillo on the synaptic 3

4 theory of working memory UNAM, Mexico city, Mexico. Work with Ranulfo Romo - Analyzing data from working memory experiments. Teaching Experience 2010 Columbia University, New York, NY TA for the course Advanced topics in theoretical neuroscience. Weizmann Institute of Science, Rehovot, Israel Young@Science Designing and instructing brain related activities to high school students Dr. Bessie F. Lawrence International Summer Science Institute Mentor in the field of Mathematics Solving Mus Silicium (Hopfield, J. J. and C. D. Brody (2000) PNAS 97(25): ) Technion - Israel Institute of Technology, Haifa, Israel. Teaching assistant in the course Advanced calculus. Services Referee for journals Neural Computation, Journal of Computational Neuroscience, Journal of Neuroscience, Journal of Theoretical 4

5 Biology, Frontiers in Computational Neuroscience, PLoS Computational Biology, PLoS One, Mathematical Biosciences Publications Journal papers. 1. Barak O, Tsodyks M. Working models of working memory. Current opinion in Neurobiology. Volume 25, April 2014, Pages Rigotti M, Barak O, Warden MR, Wang XJ, Daw ND, Miller EK, Fusi S. The importance of mixed selectivity in complex cognitive tasks. Nature. 497: (2013). 3. Barak O, Sussillo D, Romo R, Tsodyks M, Abbott LF. From fixed points to chaos: three models of delayed discrimination. Prog. in Neurobiology. 103: (2013) 4. Barak O, Rigotti M, Fusi S. The sparseness of mixed selectivity neurons controls the generalization-discrimination trade off. Journal of Neuroscience. 33 (9), Sussillo D*, Barak O*. Opening the Black Box: Low-dimensional dynamics in high-dimensional recurrent neural networks. Neural Computation. 25(3): (2013) (* equal contribution) 6. Barak O, Rigotti M. A simple derivation of a bound on the Perceptron margin using Singular Value Decomposition. Neural Computation. 23(10): (2011) 7. Barak O, Tsodyks M, Romo R. Neuronal population coding of parametric working memory. J Neuroscience, 2010 Jul 14;30(28): Melamed O, Barak O, Silberberg G, Markram H, Tsodyks M. Slow oscillations in neural networks with facilitating synapses. J Comput Neurosci., 2008 Oct;25(2): G. Mongillo*, O. Barak* & M. Tsodyks. Synaptic theory of working memory. Science Mar 14;319(5869): (* equal contribution) 10. O. Barak & M. Tsodyks. Persistent activity in neural networks with dynamic synapses. PLoS Comput Biol Feb 23;3(2) 11. Mokeichev A., Okun M., Barak O., Katz Y., Ben-Shahar O., Lampl, I. Stochastic emergence of repeating cortical motifs in spontaneous membrane potential fluctuations in-vivo Neuron 2007 Feb 1;53(3): O. Barak & M. Tsodyks. Recognition by Variance: Learning Rules for Spatiotemporal Patterns. Neural Computation, Neural Comput. 18(10): (2006) 5

6 13. Szwed M., Bagdasarian K., Blumenfeld B., Barak O., Derdikman D. and Ahissar E. Responses of trigeminal ganglion neurons to the radial distance of contact during active vibrissal touch. J Neurophysiol Feb;95(2): Talks 1. Local and global memory in echo state networks. Invited talk for the fourth ELSC-ICNC workshop in theoretical neuroscience. Jerusalem, Israel. June Embracing disorder: making sense of complex population codes. Electrical engineering, Technion. Haifa, Israel. December Embracing disorder: making sense of complex population codes. Faculty of Medicine, Technion. Haifa, Israel. December Embracing disorder: making sense of complex population codes. Department of Neurobiology, Weizmann Institute of Science. Rehovot, Israel. January Embracing disorder: making sense of complex population codes. ELSC, Hebrew University of Jerusalem. Jerusalem, Israel. January Messy nice stuff and nice messy stuff. Invited talk for Sloan-Schwartz Centers annual meeting. Virginia, July Between structure and randomness: optimal representation for noisy neuronal dynamics. Invited talk for Cosyne workshops. Utah, March Context, correlation and decorrelation. XJ Wang lab. Yale. October Context, correlation and decorrelation. Gatsby tri-center meeting. Jerusalem. June Synaptic theory of working memory. 16th Annual Meeting of the Israeli Society for Neuroscience, Eilat, Israel, Persistent activity in networks with dynamic synapses. Ron Meir lab. Technion, Haifa, Israel. February Miscellaneous Service in Israeli Navy. Awards: President of the state of Israel - Outstanding soldiers list Voluntary activity - The House of Wheels - Working with physically handicapped children Voluntary activity - With a few other families, formed a non profit organization to create and manage a Waldorf kindergarten for our children. 6

7 2008 Voluntary activity - As part of the Azrieli fellows program, tutoring 14 year old children on the verge of dropping from school in mathematics and English. Detection of two exceptionally talented kids in this setting, and tailoring a personal program to advance them. 7

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